View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5808_low_19 (Length: 310)

Name: NF5808_low_19
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5808_low_19
NF5808_low_19
[»] chr1 (29 HSPs)
chr1 (1-294)||(52957642-52957927)
chr1 (10-196)||(11795464-11795650)
chr1 (1-196)||(2752082-2752277)
chr1 (3-201)||(10430080-10430278)
chr1 (4-201)||(19270107-19270302)
chr1 (1-191)||(4395534-4395723)
chr1 (4-213)||(13254130-13254340)
chr1 (46-204)||(1394826-1394984)
chr1 (25-182)||(23698858-23699016)
chr1 (3-93)||(45925839-45925929)
chr1 (1-200)||(41117412-41117612)
chr1 (28-201)||(52415602-52415777)
chr1 (26-201)||(36319436-36319611)
chr1 (1-201)||(6295187-6295388)
chr1 (28-201)||(4671869-4672043)
chr1 (53-208)||(31622766-31622922)
chr1 (34-214)||(40518568-40518747)
chr1 (31-201)||(39386988-39387159)
chr1 (136-201)||(1674248-1674313)
chr1 (53-196)||(11237595-11237738)
chr1 (1-93)||(21965730-21965822)
chr1 (50-196)||(32769466-32769614)
chr1 (1-40)||(40518766-40518805)
chr1 (1-56)||(43021322-43021377)
chr1 (1-39)||(4671820-4671858)
chr1 (1-39)||(32769404-32769442)
chr1 (58-179)||(43021440-43021560)
chr1 (7-40)||(52415555-52415588)
chr1 (132-196)||(24140629-24140693)
[»] chr2 (26 HSPs)
chr2 (1-196)||(11084321-11084517)
chr2 (23-196)||(41541618-41541792)
chr2 (1-196)||(42871903-42872095)
chr2 (1-196)||(25713812-25714007)
chr2 (2-196)||(25713492-25713688)
chr2 (1-194)||(20170915-20171103)
chr2 (1-202)||(4700655-4700860)
chr2 (26-201)||(29408325-29408499)
chr2 (1-196)||(36243514-36243708)
chr2 (29-198)||(157605-157774)
chr2 (26-183)||(3309421-3309578)
chr2 (3-201)||(15507881-15508080)
chr2 (1-196)||(16806035-16806220)
chr2 (1-196)||(16845316-16845501)
chr2 (58-204)||(12412945-12413093)
chr2 (58-204)||(12425005-12425153)
chr2 (24-152)||(21253028-21253156)
chr2 (24-208)||(33660575-33660758)
chr2 (5-196)||(44898610-44898802)
chr2 (33-201)||(1397941-1398105)
chr2 (53-211)||(4958963-4959122)
chr2 (58-149)||(45271885-45271976)
chr2 (53-208)||(34424365-34424521)
chr2 (1-64)||(149973-150036)
chr2 (58-201)||(27746967-27747109)
chr2 (5-65)||(45272930-45272990)
[»] scaffold0188 (1 HSPs)
scaffold0188 (1-177)||(5616-5794)
[»] scaffold0841 (3 HSPs)
scaffold0841 (2-196)||(3830-4026)
scaffold0841 (1-196)||(4148-4344)
scaffold0841 (145-200)||(5108-5163)
[»] chr8 (23 HSPs)
chr8 (4-177)||(14897001-14897175)
chr8 (1-196)||(5871265-5871461)
chr8 (1-196)||(34039304-34039500)
chr8 (8-149)||(7694941-7695083)
chr8 (1-201)||(38401963-38402160)
chr8 (49-206)||(35970067-35970224)
chr8 (34-201)||(29315231-29315399)
chr8 (1-201)||(32234115-32234314)
chr8 (1-156)||(34146695-34146851)
chr8 (1-120)||(11087589-11087708)
chr8 (1-201)||(27232100-27232299)
chr8 (11-206)||(35970481-35970677)
chr8 (26-151)||(1530248-1530374)
chr8 (53-196)||(3443319-3443464)
chr8 (1-68)||(30887529-30887596)
chr8 (110-195)||(36683451-36683536)
chr8 (58-196)||(1256236-1256375)
chr8 (1-40)||(29315416-29315455)
chr8 (53-214)||(9455560-9455721)
chr8 (115-201)||(13385441-13385527)
chr8 (1-38)||(3742105-3742142)
chr8 (140-201)||(7577823-7577884)
chr8 (1-61)||(38457747-38457807)
[»] chr7 (30 HSPs)
chr7 (1-196)||(16197276-16197471)
chr7 (24-201)||(33258865-33259044)
chr7 (1-151)||(2273282-2273430)
chr7 (1-201)||(28226740-28226941)
chr7 (8-196)||(4567815-4568003)
chr7 (1-201)||(10534419-10534619)
chr7 (1-196)||(2271339-2271533)
chr7 (1-201)||(17270035-17270235)
chr7 (26-196)||(37124629-37124799)
chr7 (1-201)||(43368974-43369172)
chr7 (1-199)||(39618117-39618314)
chr7 (24-158)||(10025846-10025981)
chr7 (1-202)||(41746904-41747104)
chr7 (1-193)||(2798792-2798985)
chr7 (31-201)||(27723738-27723904)
chr7 (31-204)||(3835243-3835417)
chr7 (53-201)||(4962546-4962694)
chr7 (1-156)||(41690210-41690366)
chr7 (2-197)||(27061974-27062169)
chr7 (1-127)||(39599424-39599555)
chr7 (1-151)||(8614565-8614716)
chr7 (53-201)||(39434426-39434576)
chr7 (10-91)||(12394659-12394740)
chr7 (4-68)||(35792635-35792699)
chr7 (1-94)||(7808798-7808891)
chr7 (104-192)||(12394780-12394868)
chr7 (110-201)||(1752047-1752138)
chr7 (1-93)||(27229006-27229095)
chr7 (58-201)||(46671628-46671774)
chr7 (132-201)||(39599315-39599384)
[»] chr3 (38 HSPs)
chr3 (23-196)||(9589203-9589380)
chr3 (1-201)||(45647018-45647218)
chr3 (1-196)||(296874-297070)
chr3 (2-186)||(376138-376322)
chr3 (1-201)||(2599482-2599683)
chr3 (3-201)||(16236986-16237185)
chr3 (50-201)||(38750451-38750602)
chr3 (1-208)||(27817858-27818071)
chr3 (1-128)||(45667859-45667987)
chr3 (1-151)||(6749366-6749516)
chr3 (1-198)||(1405305-1405506)
chr3 (5-151)||(2094196-2094343)
chr3 (30-156)||(21916014-21916138)
chr3 (77-201)||(21959318-21959443)
chr3 (132-214)||(1273109-1273191)
chr3 (4-196)||(6472240-6472430)
chr3 (35-201)||(21933900-21934065)
chr3 (26-139)||(19229316-19229429)
chr3 (1-206)||(34669102-34669309)
chr3 (133-204)||(34824253-34824324)
chr3 (26-200)||(5494071-5494244)
chr3 (53-201)||(7259295-7259445)
chr3 (20-196)||(633035-633210)
chr3 (122-213)||(12568925-12569016)
chr3 (122-213)||(13545389-13545480)
chr3 (50-181)||(34823612-34823743)
chr3 (14-68)||(12568817-12568871)
chr3 (14-68)||(13545281-13545335)
chr3 (1-95)||(22722248-22722342)
chr3 (15-68)||(388938-388991)
chr3 (50-197)||(37030368-37030517)
chr3 (25-93)||(1272671-1272739)
chr3 (26-69)||(19578492-19578535)
chr3 (1-40)||(38750635-38750674)
chr3 (10-148)||(45759109-45759248)
chr3 (163-201)||(19578963-19579001)
chr3 (1-62)||(6512106-6512166)
chr3 (1-41)||(7259443-7259483)
[»] chr4 (35 HSPs)
chr4 (1-192)||(45666732-45666922)
chr4 (1-214)||(9808043-9808254)
chr4 (1-173)||(38839921-38840092)
chr4 (1-201)||(17330842-17331042)
chr4 (3-195)||(34031469-34031665)
chr4 (20-196)||(50721378-50721554)
chr4 (53-215)||(38433823-38433985)
chr4 (14-195)||(53370054-53370234)
chr4 (1-197)||(54982156-54982353)
chr4 (104-201)||(19443042-19443139)
chr4 (1-197)||(49263491-49263690)
chr4 (33-156)||(2685076-2685200)
chr4 (26-195)||(24073335-24073505)
chr4 (42-192)||(47943965-47944111)
chr4 (53-196)||(55344059-55344204)
chr4 (78-201)||(9088741-9088865)
chr4 (53-204)||(24537897-24538047)
chr4 (1-183)||(53393796-53393978)
chr4 (105-196)||(1821072-1821163)
chr4 (51-201)||(37209540-37209691)
chr4 (58-195)||(46430403-46430541)
chr4 (1-196)||(49299321-49299518)
chr4 (1-55)||(30912830-30912884)
chr4 (1-118)||(46250279-46250395)
chr4 (9-128)||(22349374-22349491)
chr4 (38-201)||(26625584-26625744)
chr4 (1-56)||(33809357-33809412)
chr4 (50-156)||(41503034-41503141)
chr4 (58-208)||(37371009-37371163)
chr4 (1-40)||(41502961-41503000)
chr4 (123-201)||(6949563-6949641)
chr4 (167-217)||(8077782-8077832)
chr4 (1-86)||(25494223-25494306)
chr4 (61-118)||(46016448-46016505)
chr4 (104-196)||(38044247-38044339)
[»] chr5 (26 HSPs)
chr5 (13-200)||(6428522-6428709)
chr5 (1-200)||(8544125-8544325)
chr5 (1-196)||(17201878-17202074)
chr5 (1-181)||(12436151-12436331)
chr5 (11-151)||(11991725-11991866)
chr5 (1-196)||(19804184-19804380)
chr5 (1-195)||(32474597-32474791)
chr5 (26-214)||(28620497-28620683)
chr5 (53-194)||(36059554-36059695)
chr5 (110-201)||(39585348-39585439)
chr5 (53-201)||(20202161-20202310)
chr5 (1-150)||(39940167-39940316)
chr5 (1-154)||(42673513-42673666)
chr5 (1-151)||(25612759-25612908)
chr5 (77-197)||(17558319-17558439)
chr5 (58-196)||(1584181-1584320)
chr5 (25-196)||(37270025-37270196)
chr5 (34-196)||(248896-249057)
chr5 (1-85)||(17200493-17200577)
chr5 (4-201)||(1583938-1584138)
chr5 (42-197)||(11825178-11825336)
chr5 (110-213)||(32717587-32717689)
chr5 (8-128)||(18412836-18412957)
chr5 (53-196)||(16366043-16366187)
chr5 (1-40)||(249072-249111)
chr5 (48-93)||(19133127-19133172)
[»] chr6 (15 HSPs)
chr6 (1-153)||(23410956-23411109)
chr6 (5-201)||(8049786-8049985)
chr6 (1-201)||(25056990-25057189)
chr6 (1-213)||(14093194-14093406)
chr6 (1-148)||(2437273-2437421)
chr6 (59-201)||(6026522-6026664)
chr6 (1-196)||(31660874-31661070)
chr6 (28-201)||(26252004-26252177)
chr6 (53-196)||(7972258-7972402)
chr6 (19-156)||(6110663-6110801)
chr6 (53-201)||(21526915-21527064)
chr6 (1-69)||(8049679-8049747)
chr6 (10-196)||(31656021-31656208)
chr6 (110-188)||(8461231-8461309)
chr6 (163-201)||(17752216-17752254)
[»] scaffold1327 (1 HSPs)
scaffold1327 (1-196)||(1199-1394)
[»] scaffold1130 (1 HSPs)
scaffold1130 (53-201)||(707-856)
[»] scaffold0005 (1 HSPs)
scaffold0005 (3-151)||(257213-257361)
[»] scaffold1986 (1 HSPs)
scaffold1986 (1-148)||(568-716)
[»] scaffold0637 (1 HSPs)
scaffold0637 (1-93)||(3777-3869)
[»] scaffold0006 (1 HSPs)
scaffold0006 (53-196)||(45917-46060)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 52957642 - 52957927
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||    
T  52957642 ttgttggagaaaaagatattaactaacaaatgtttgttacaagatgaagataacatgttaa--------tagagagaaagtgtgtgcaaaaaataagaac 52957733  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaa 200  Q
    || || ||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| | ||||||||||||||    
T  52957734 atattagtagattaaaatgatggtataacatgaagaaaaggtgcaaaaatacacttcattgttttgatgttaatattctaaaatgccacttaaaaaagaa 52957833  T
Q  201 cagatggaataattaattataatcaataaatatatttaattgcagtggtgaagccacacacaagctcgtgcgagctcgtgcctgcacaaatatt 294  Q
    |||||||| |||||||||||||| ||||||||| ||||| |||| |||||| |||||||||||||| |||||||||||||||||||||||||||    
T  52957834 cagatggagtaattaattataataaataaatatgtttaaatgcattggtgatgccacacacaagcttgtgcgagctcgtgcctgcacaaatatt 52957927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 11795650 - 11795464
Alignment:
Q  10 aaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggta 109  Q
    ||||||||| ||||||| |||||||||||| |||| ||| ||||||| |||||||||||| | ||||||||||||||||||||| |  || || |||||     
T  11795650 aaaaagatagtaactaaaaaatgtttgttataagaaaaatataacatattaaatttattggaaagagaaagtgtgtgcaaaaaaaagtaatatattggtg 11795551  T
Q  110 gattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    ||||||||||| ||||||| ||||||||||||||||||||||  ||||  | ||||   ||||||||||||||||||||||||||||    
T  11795550 gattaaaatgagggtataatatgaagaaaatgtgcaaaaatactcttcaatattttagcgttaatattctaaaacgacacttaaaaa 11795464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 2752082 - 2752277
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    |||||| ||||||||| | ||| |||||| ||||| |||||||| ||||| ||||  | |||||||||  | |||||||||||||||||||||||  |||    
T  2752082 ttgttgaagaaaaagaaagtaattaacaattgtttattacaagagaaagacaacacataaaatttatttgaaagagaaagtgtgtgcaaaaaatataaac 2752181  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
     | ||||| ||||||||||| ||||||| | ||||||||||| |||||||| ||||  ||  ||| |||||| ||||||||||||| |||||||||    
T  2752182 ttattggtcgattaaaatgagggtataataggaagaaaatgtacaaaaatacactttcttaatttaatgttactattctaaaacgatacttaaaaa 2752277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 10430278 - 10430080
Alignment:
Q  3 gttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacat 102  Q
    |||||||||||||||| |||||||||| | |||||||  ||| ||||||||| | |||||||||||| | ||| |||||||||||||||| || ||| ||    
T  10430278 gttggagaaaaagatagtaactaacaattatttgttatgagagaaagataacgtattaaatttattggaaagaaaaagtgtgtgcaaaaagtaggaatat 10430179  T
Q  103 tttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
     ||||| ||||||||| | | ||||| |  ||  |||| |||||||||| |||| | |  |||||||||||||||| ||||| ||||||||||||||||    
T  10430178 attggtggattaaaataaggatataataaaaattaaatttgcaaaaatacactttgctaatttgatgttaatattccaaaacaacacttaaaaaagaac 10430080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 19270107 - 19270302
Alignment:
Q  4 ttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacatt 103  Q
    ||||||||||||||| |||||||||| |||||||||| ||| |  ||||| || |||||||||||| | ||||||||| | |||||||||||| ||  |     
T  19270107 ttggagaaaaagatagtaactaacaattgtttgttacgagaga--gataaaatattaaatttattggaaagagaaagtttatgcaaaaaataacaattta 19270204  T
Q  104 ttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    ||||| ||||||||||| ||||||| | ||  ||||||||||| |||| |||||| |  |||| ||||||||||  ||||||||||||||||| ||||    
T  19270205 ttggtggattaaaatgagggtataataagacaaaaatgtgcaataatacacttcgctaatttggtgttaatatttcaaaacgacacttaaaaaggaac 19270302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 4395723 - 4395534
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgca-aaaaataagaa 99  Q
    |||||||||||||||||| |||| |||||| ||||||||| ||  |||||||| ||  ||||||||||| | |||||||||||| | | ||||||| |||    
T  4395723 ttgttggagaaaaagatagtaaccaacaaaagtttgttacgagggaaagataaaat--taaatttattggaaagagaaagtgtgcgtagaaaaataggaa 4395626  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacactt 191  Q
     || ||||| ||||||||||||||||||| | |||||||| ||| ||||||| |||||| | ||||  |||||| |||| ||||||||||||    
T  4395625 tatattggtggattaaaatgatggtataataggaagaaaaggtgaaaaaatacacttcgctatttttgtgttaaaattccaaaacgacactt 4395534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 13254340 - 13254130
Alignment:
Q  4 ttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa-taagaacat 102  Q
    |||||||||||||||  |||| |||| |||||||||| ||| ||| ||||||| |||||||||||| | ||| | |||||||| |||||| || |||  |    
T  13254340 ttggagaaaaagataaaaactgacaattgtttgttacgagagaaaaataacatattaaatttattggaaagatatagtgtgtgaaaaaaaataggaattt 13254241  T
Q  103 tttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaaca 202  Q
     ||| | |||||||||||  | |||| |||||||||||||||||||||| || ||| | ||||||||||||| ||||||||  || |||||||| ||||     
T  13254240 attgatggattaaaatgagagcataatatgaagaaaatgtgcaaaaatacacatcgctattttgatgttaattttctaaaaaaacgcttaaaaaggaacg 13254141  T
Q  203 gatggaataat 213  Q
    |||||| ||||    
T  13254140 gatggagtaat 13254130  T

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Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 204
Target Start/End: Original strand, 1394826 - 1394984
Alignment:
Q  46 aaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgca 145  Q
    |||| |||||| |||||||||||| | | |||||||||| | |||||||| ||| || ||||| ||||||||||| ||||| | |  ||||||||||| |    
T  1394826 aaagttaacatattaaatttattggaaaaagaaagtgtgcgaaaaaaataggaatatattggtggattaaaatgagggtatgatagaaagaaaatgtgaa 1394925  T
Q  146 aaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacaga 204  Q
    |||||| |||||  |  |||||||| ||||||||||||||||||||||||| |||||||    
T  1394926 aaaatacacttcactaatttgatgtgaatattctaaaacgacacttaaaaaggaacaga 1394984  T

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Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 23699016 - 23698858
Alignment:
Q  25 aacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtg-caaaaaataagaacattttggtagattaaaatgatgg 123  Q
    ||||||| |||||||||||||||| ||||||| ||||||| |||| | ||| |||||||||| ||||||||||||| || ||||| ||||||| |||       
T  23699016 aacaaatatttgttacaagataaatataacatattaaattcattgaaaagataaagtgtgtgccaaaaaataagaatatattggtggattaaattgagat 23698917  T
Q  124 tataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaa 182  Q
    ||||| | |||||||||||||||||||| ||||| || ||||  ||||||| |||||||    
T  23698916 tataataggaagaaaatgtgcaaaaatacacttcattattttcgtgttaattttctaaa 23698858  T

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Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 45925839 - 45925929
Alignment:
Q  3 gttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa 93  Q
    |||||||||||||||| ||||||||||||||||||||  ||| ||||||||||| |||||||||||| | |||||||||||||||||||||    
T  45925839 gttggagaaaaagataataactaacaaatgtttgttaggagagaaagataacatattaaatttattgaaaagagaaagtgtgtgcaaaaaa 45925929  T

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Target: chr1; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 41117412 - 41117612
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgc-aaaaaataagaa 99  Q
    |||||| ||||||||||| ||| | ||   |||||||||| ||| ||||||||||| |||||||||||| | ||| ||||||||||| ||||||||| ||    
T  41117412 ttgttgaagaaaaagataataagtgacgtttgtttgttacgagagaaagataacatattaaatttattggaaagataaagtgtgtgcaaaaaaataaaaa 41117511  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaaga 199  Q
      | ||||| ||||||||||| ||||||| |  || ||||  |||||||||| || ||| |  |||| ||||||| |||||||| |||||||||||||||    
T  41117512 tttattggtggattaaaatgagggtataatagaaaaaaaaaatgcaaaaatacacatcgctagtttggtgttaattttctaaaaagacacttaaaaaaga 41117611  T
Q  200 a 200  Q
    |    
T  41117612 a 41117612  T

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Target: chr1; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 201
Target Start/End: Original strand, 52415602 - 52415777
Alignment:
Q  28 aaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgc--aaaaaataagaacattttggtagattaaaatgatggta 125  Q
    ||||||||||||| ||| ||| ||||||| |||||||||||| | ||| |||||||||||  |||||||| | | || ||||| ||||||| ||| ||||    
T  52415602 aaatgtttgttacgagaaaaatataacatattaaatttattggaaagaaaaagtgtgtgccgaaaaaatagggatatattggtggattaaattgagggta 52415701  T
Q  126 taacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    ||| | |||||||||||| ||||||| |||| | | ||||  || |||| ||||||||||||||||||||| ||||    
T  52415702 taataggaagaaaatgtgtaaaaatacactttgctattttcgtggtaattttctaaaacgacacttaaaaaggaac 52415777  T

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Target: chr1; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 36319611 - 36319436
Alignment:
Q  26 acaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa-taagaacattttggtagattaaaatgatggt 124  Q
    |||| |||||||||| ||||||| ||||||| |||||||||||| | ||| || |||||||||||||| |  |||| || |||| |||||||||||  ||    
T  36319611 acaattgtttgttacgagataaatataacatattaaatttattggaaagataaggtgtgtgcaaaaaaattggaac-ttatggtggattaaaatgagagt 36319513  T
Q  125 ataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    |||| | |||||||||||||||||||| || ||| | ||||  ||||||| |||||||| || ||||||||| ||||    
T  36319512 ataataggaagaaaatgtgcaaaaatacacatcgctatttttgtgttaattttctaaaaagatacttaaaaaggaac 36319436  T

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Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 6295388 - 6295187
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    |||||||||||||| ||| ||||  |||| |||||||||| ||| ||||||||||| |||||||| ||  | ||| ||| |||||| ||||||  ||||     
T  6295388 ttgttggagaaaaaaataataaccgacaattgtttgttacgagagaaagataacatattaaattttttagaaagataaaatgtgtgtaaaaaaatagaaa 6295289  T
Q  101 att-ttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaaga 199  Q
     || ||||| || ||| |||| ||||||| |  ||||||||||||||||||| || ||| | ||||  ||||||| |||||||| |||| ||||||| ||    
T  6295288 tttattggtggagtaacatgagggtataatagaaagaaaatgtgcaaaaatacacatcgctattttagtgttaattttctaaaaagacatttaaaaagga 6295189  T
Q  200 ac 201  Q
    ||    
T  6295188 ac 6295187  T

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Target: chr1; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 201
Target Start/End: Original strand, 4671869 - 4672043
Alignment:
Q  28 aaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataaga-acattttggtagattaaaatgatggtat 126  Q
    ||||||||||||| ||| ||| |||||||||||||||||||| | ||| |||||||     |||||| ||| | || |||||  |||||| ||| |||||    
T  4671869 aaatgtttgttacgagaaaaatataacatgttaaatttattggaaagataaagtgtaattcaaaaattagagatatattggtgaattaaattgaaggtat 4671968  T
Q  127 aacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    || | ||||||||| |||||||||| |||| | | ||||  ||  ||| ||||||||||||||||||||||||||    
T  4671969 aataggaagaaaatatgcaaaaatacactttgctattttcgtggaaattttctaaaacgacacttaaaaaagaac 4672043  T

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Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 208
Target Start/End: Complemental strand, 31622922 - 31622766
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacatt-ttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaata 151  Q
    |||| |||||||||||||| ||| |||||||||||||||||  || | ||| || || || |||||||| || |||| | ||  ||||||||||||||||    
T  31622922 acatattaaatttattgtaaagataaagtgtgtgcaaaaaaataggaaattattagtggagtaaaatgagggaataataggagaaaaatgtgcaaaaata 31622823  T
Q  152 tacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacagatgga 208  Q
     |||||||| ||||  || ||| |||||| || |||||||||||| |||| ||||||    
T  31622822 cacttcgttatttttgtgctaaaattctagaatgacacttaaaaaggaacggatgga 31622766  T

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Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 214
Target Start/End: Complemental strand, 40518747 - 40518568
Alignment:
Q  34 ttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataacatga 133  Q
    ||||||| ||| ||| ||||||| |||||||||||| | | | ||||||||  |||||||||   | || || |||||||||| ||| ||||||| | ||    
T  40518747 ttgttacgagaaaaatataacatattaaatttattggaaatataaagtgtgc-caaaaaatagagatatattagtagattaaattgagggtataatagga 40518649  T
Q  134 agaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacagatggaataatt 214  Q
    |||||||||||||||||| |||| ||| |||| |||  ||  || |||||||||||||||||| ||| |||  ||||||||    
T  40518648 agaaaatgtgcaaaaatacactttgttattttcatggaaaatttttaaaacgacacttaaaaaggaatagagcgaataatt 40518568  T

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Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 201
Target Start/End: Original strand, 39386988 - 39387159
Alignment:
Q  31 tgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa-taagaacattttggtagattaaaatgatggtataac 129  Q
    |||| ||||||||| ||||||||||| | |||||||||  | ||| ||||||||||||||||| || |||  | || || |||||||||||   |||||     
T  39386988 tgttggttacaagagaaagataacatataaaatttattcgaaagataaagtgtgtgcaaaaaagtaggaatttattcgtggattaaaatgagaatataat 39387087  T
Q  130 atgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    | ||||||||| ||||||| || || ||| | |||||||  |||| ||||||||  ||||||||||| ||||    
T  39387088 aggaagaaaatttgcaaaagtacacatcgctattttgatagtaattttctaaaaatacacttaaaaatgaac 39387159  T

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Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 1674313 - 1674248
Alignment:
Q  136 aaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    ||||||| |||||||| |||| ||| ||||  |||||| |||||||||||||||||||||||||||    
T  1674313 aaaatgtacaaaaatacactttgttatttttgtgttaaaattctaaaacgacacttaaaaaagaac 1674248  T

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Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 11237738 - 11237595
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacatt-ttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaata 151  Q
    |||| |||||||||||| | ||| ||| |||||||||||||   ||| ||| || || ||||||||||||||||||| | ||| ||||  ||||||||||    
T  11237738 acatattaaatttattggaaagataaaatgtgtgcaaaaaaattgaaaattattagtggattaaaatgatggtataataggaaaaaaaa-tgcaaaaata 11237640  T
Q  152 tacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
     |||||  | ||||  |||||  ||||||||||||||||||||||    
T  11237639 cacttcactatttttgtgttataattctaaaacgacacttaaaaa 11237595  T

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Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 21965822 - 21965730
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa 93  Q
    |||||| ||||||||| | | |||||||| ||||||||| |||| ||||||||||  ||| |||||||| | | ||||||||||||| |||||    
T  21965822 ttgttgaagaaaaagagagtgactaacaattgtttgttataagagaaagataacacattatatttattggacaaagaaagtgtgtgccaaaaa 21965730  T

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Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 196
Target Start/End: Original strand, 32769466 - 32769614
Alignment:
Q  50 ataacatgttaaatttattgtagagagaaagtgtgtgc--aaaaaataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaa 147  Q
    ||||||| |||||||||||| | ||| |||||||||||  ||||||||   | || ||||| ||||||| ||| | ||||| | |||||||||||| |||    
T  32769466 ataacatattaaatttattggaaagataaagtgtgtgccaaaaaaatagagatatattggtggattaaattgaggatataataggaagaaaatgtgaaaa 32769565  T
Q  148 aatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    |||| | || | | ||||  ||  ||| |||||||||||||||||||||    
T  32769566 aataaaatttgctattttcgtgaaaattttctaaaacgacacttaaaaa 32769614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 40518805 - 40518766
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttac 40  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  40518805 ttgttggagaaaaagatactaagtaacaaatgtttgttac 40518766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 43021322 - 43021377
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacat 56  Q
    ||||||||||||||||||||||||||||| ||||| |||  ||| ||| |||||||    
T  43021322 ttgttggagaaaaagatattaactaacaattgtttattatgagagaaaaataacat 43021377  T

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Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 4671820 - 4671858
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgtta 39  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  4671820 ttgttggagaaaaagatagtaagtaacaaatgtttgtta 4671858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 32769404 - 32769442
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgtta 39  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  32769404 ttgttggagaaaaagatagtaagtaacaaatgtttgtta 32769442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 43021440 - 43021560
Alignment:
Q  58 ttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttc 157  Q
    |||||||||||| | ||||||||||||   |||||||| ||| || ||||| ||||||| | | ||||||| |  ||| ||||||||||||||  | |||    
T  43021440 ttaaatttattggaaagagaaagtgtgca-aaaaaatatgaatatattggtggattaaactaagggtataatagaaagtaaatgtgcaaaaatccatttc 43021538  T
Q  158 gttgttttgatgttaatattct 179  Q
    |||  |||| ||||||||||||    
T  43021539 gttaatttggtgttaatattct 43021560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 52415555 - 52415588
Alignment:
Q  7 gagaaaaagatattaactaacaaatgtttgttac 40  Q
    |||||||||||| |||||||||||||||||||||    
T  52415555 gagaaaaagatagtaactaacaaatgtttgttac 52415588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 24140629 - 24140693
Alignment:
Q  132 gaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    |||||||| ||||||||||| ||||||||  || | ||||| ||||| ||||||| |||||||||    
T  24140629 gaagaaaaagtgcaaaaatacacttcgttaattaggtgttactattccaaaacgatacttaaaaa 24140693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 11084321 - 11084517
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaa-aataagaa 99  Q
    |||||||||||||| ||||||| ||||||||||||||||| ||| ||||||||||| |||||||||||| | ||||||||||||||||||| |||| |||    
T  11084321 ttgttggagaaaaaaatattaattaacaaatgtttgttacgagagaaagataacatattaaatttattggaaagagaaagtgtgtgcaaaataatatgaa 11084420  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
     || ||||||||||||||||| ||||||| | |||||||||||  ||||| | ||||   | ||||||||||||||||| |||| ||||||||||||    
T  11084421 tatattggtagattaaaatgagggtataataggaagaaaatgtataaaaacacactttactattttgatgttaatattccaaaatgacacttaaaaa 11084517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 41541618 - 41541792
Alignment:
Q  23 ctaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaa-aataagaacattttggtagattaaaatgat 121  Q
    ||||||||||||||||||| || ||| ||||||| |||||||||||| | |||||||||||||| |||| |||||||| || ||||| ||||||||| |     
T  41541618 ctaacaaatgtttgttacaggagaaaaataacatattaaatttattggaaagagaaagtgtgtgaaaaagaataagaatatattggtggattaaaataag 41541717  T
Q  122 ggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    ||||||| | ||||||||| ||||||| || |||| ||| ||||| ||||||||||||||||| ||| |||||||    
T  41541718 ggtataataggaagaaaatatgcaaaagtacactttgttattttggtgttaatattctaaaacaacaattaaaaa 41541792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 42872095 - 42871903
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaa-aataagaa 99  Q
    |||||| ||||||| ||| ||||||||||||||||||||| ||| ||| ||||||| |||||||||||  || |||||||||||  ||||| |||| |||    
T  42872095 ttgttgaagaaaaa-atagtaactaacaaatgtttgttacgagagaaa-ataacatattaaatttattagagtgagaaagtgtg--caaaataataggaa 42872000  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
     || ||||| ||||||||||| ||||| | | ||||||||| |||||||||| |||||| | ||||||||||| |||||||||||||||||||||||    
T  42871999 tatattggtggattaaaatgagggtatgataggaagaaaatatgcaaaaatacacttcgctattttgatgttagtattctaaaacgacacttaaaaa 42871903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 25714007 - 25713812
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataa--ga 98  Q
    |||||||||||||| | | | ||||||||||||||||||| ||| ||||||||||| |||||||||||| | ||||||||||||||||||||| ||  ||    
T  25714007 ttgttggagaaaaacacactgactaacaaatgtttgttacgagagaaagataacatattaaatttattggaaagagaaagtgtgtgcaaaaaaaaaagga 25713908  T
Q  99 acattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    | || ||||| ||||||||||| ||||||| | ||||||||  |  | |||||||||||||| ||||  |||||||||| | |||||||  |||||||    
T  25713907 atatattggtggattaaaatgagggtataataggaagaaaaact--acaaatatacttcgttattttattgttaatattatgaaacgacttttaaaaa 25713812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 25713688 - 25713492
Alignment:
Q  2 tgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaa--aataagaa 99  Q
    ||||||||||||| | | ||||||||||||||||||||   || ||| ||||||||||||| |||||| | ||||||||||||| |||||  || | |||    
T  25713688 tgttggagaaaaacacaataactaacaaatgtttgttatgtgagaaaaataacatgttaaaattattggaaagagaaagtgtgttcaaaaataaaaggaa 25713589  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
     || ||| ||||||||||||| ||||||| | ||||||||  || ||||||| |||||||| ||||  |||||||||| |||||||||| |||||||    
T  25713588 tatattgttagattaaaatgagggtataataggaagaaaaactgaaaaaatacacttcgttattttagtgttaatattttaaaacgacatttaaaaa 25713492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 20171103 - 20170915
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa-taagaa 99  Q
    |||||||||||||||||| ||||||| | ||||||||||| ||| ||||||||||  | ||| ||||       | ||||||||| ||||||| || |||    
T  20171103 ttgttggagaaaaagatagtaactaatacatgtttgttacgagagaaagataacaaatgaaaattata------aaaaagtgtgtacaaaaaaataggaa 20171010  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaa 194  Q
     || ||||| ||||||||||| ||||||| | |||||||||||||||||||| |||||| | |||  ||||||||||||||||||||||||||||    
T  20171009 tatattggtggattaaaatgagggtataataggaagaaaatgtgcaaaaatacacttcgctatttcaatgttaatattctaaaacgacacttaaa 20170915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 4700860 - 4700655
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtg-caaaaaataagaa 99  Q
    |||||||||||||||||| |||||||||| | |||||||| | | ||||||||||| ||||| |||||||| ||||||||||||||  |||||||| |||    
T  4700860 ttgttggagaaaaagatactaactaacaattatttgttacgaaagaaagataacatattaaa-ttattgtaaagagaaagtgtgtgtaaaaaaatatgaa 4700762  T
Q  100 cattttggtagattaaaatgatgg----tataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaa 195  Q
     || ||||| ||||||||| | ||    | |||   |||| ||| ||||||||||| ||||||||  |||||||||||||||  ||||||||| ||||||    
T  4700761 tatattggtggattaaaataacggtctatgtaattggaagtaaaggtgcaaaaatacacttcgttaatttgatgttaatatttcaaaacgacagttaaaa 4700662  T
Q  196 aagaaca 202  Q
    |||||||    
T  4700661 aagaaca 4700655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 29408499 - 29408325
Alignment:
Q  26 acaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggta 125  Q
    |||| |||||||||  ||| ||||||||||| |||||||||||| | ||| ||||||| || ||||||||||||  | ||||| ||||||||||| ||||    
T  29408499 acaattgtttgttatgagagaaagataacatattaaatttattgaaaagataaagtgtatg-aaaaaataagaatttgttggtggattaaaatgagggta 29408401  T
Q  126 taacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    ||| |  ||||||||||||||||||| || ||||| ||||| ||||||| ||||||||  ||| ||||||| ||||    
T  29408400 taatagaaagaaaatgtgcaaaaatacacatcgttattttggtgttaattttctaaaaaaacatttaaaaaggaac 29408325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 36243708 - 36243514
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    ||||||||||||||||||   || |||||||||||||||  | | ||||||||||| |||||||||||| | ||||||||||| ||||||||||| |||     
T  36243708 ttgttggagaaaaagatagctaccaacaaatgtttgttatgaaagaaagataacatattaaatttattggaaagagaaagtgtatgcaaaaaataggaat 36243609  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    |  ||||| ||||||||||| ||||||| | ||| ||||  || ||||||| | |||||| ||||  |||||| |||||||||  |||||||||||    
T  36243608 acattggttgattaaaatgagggtataataggaataaaaaatg-aaaaatacatttcgttattttagtgttaaaattctaaaattacacttaaaaa 36243514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 198
Target Start/End: Complemental strand, 157774 - 157605
Alignment:
Q  29 aatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataa 128  Q
    |||||||||||||| | ||||||||||| |||||||||||  | |  ||||||||||||||||||||| ||  |  || | ||||||||||| | |||||    
T  157774 aatgtttgttacaaaagaaagataacatattaaatttattagaaatggaaagtgtgtgcaaaaaataaaaaattgctgatggattaaaatgaggatataa 157675  T
Q  129 catgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaag 198  Q
     | |||||||||||| |||||||||||| | |  ||| | |||||||||||||| ||| |||||||||||    
T  157674 taggaagaaaatgtgtaaaaatatactttgctaatttaacgttaatattctaaagcgagacttaaaaaag 157605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 3309578 - 3309421
Alignment:
Q  26 acaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggta 125  Q
    |||| |||||||||  ||| ||||||||||| ||||||| |||| | | | ||| |||||||||||| || |||  | ||| |  |||||||||| ||||    
T  3309578 acaattgtttgttaagagagaaagataacatattaaattgattgaaaatataaaatgtgtgcaaaaagtaggaatttattgatgaattaaaatgagggta 3309479  T
Q  126 taacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaa 183  Q
    ||| | |||||||||||||||||||| || ||||||||||||||||||| ||||||||    
T  3309478 taataggaagaaaatgtgcaaaaatacacatcgttgttttgatgttaattttctaaaa 3309421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 201
Target Start/End: Original strand, 15507881 - 15508080
Alignment:
Q  3 gttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacat 102  Q
    |||||||||||| ||| ||||||||||||||||||||  | | ||||||||||| ||||||| || | | | || |||||| |||||||||  |||| ||    
T  15507881 gttggagaaaaacatagtaactaacaaatgtttgttaagacagaaagataacatattaaattaatggaaaa-aggaagtgtatgcaaaaaaatagaaaat 15507979  T
Q  103 tt--tggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaa 200  Q
     |  |||| ||||||||||| ||||||| | ||||||| || ||||||||| | |||| | |||||  |||||||| ||||||||||||||||||| |||    
T  15507980 atattggtggattaaaatgaaggtataataggaagaaagtgagcaaaaatacaattcgctattttggcgttaatatactaaaacgacacttaaaaaggaa 15508079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 16806220 - 16806035
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    ||||| |||||||||||| ||||| |||| |||||||||| ||| ||||||||||| |||||||||||| | ||| ||||||||||||||  |           
T  16806220 ttgttagagaaaaagataataactgacaattgtttgttacgagagaaagataacatattaaatttattggaaagataaagtgtgtgcaaatca------- 16806128  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
       ||||| ||||||||| | ||||||| | |||||||| ||||||||||| || ||  | ||||| | ||||| |||||||| ||||||||||||    
T  16806127 ---ttggtggattaaaattagggtataataggaagaaaacgtgcaaaaatacacatcactattttggttttaattttctaaaaagacacttaaaaa 16806035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 16845501 - 16845316
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    ||||| |||||||||||| ||||| |||| |||||||||| ||| ||||||||||| |||||||||||| | ||| ||||||||||||||  |           
T  16845501 ttgttagagaaaaagataataactgacaattgtttgttacgagagaaagataacatattaaatttattggaaagataaagtgtgtgcaaatca------- 16845409  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
       ||||| ||||||||| | ||||||| | |||||||| ||||||||||| || ||  | ||||| | ||||| |||||||| ||||||||||||    
T  16845408 ---ttggtggattaaaattagggtataataggaagaaaacgtgcaaaaatacacatcactattttggttttaattttctaaaaagacacttaaaaa 16845316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 204
Target Start/End: Original strand, 12412945 - 12413093
Alignment:
Q  58 ttaaatttattgtagagagaaagtgtgtgcaaaaaa-taagaacatt-ttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatact 155  Q
    |||||||||||| | ||| ||||||||||||||||| | |||| | | ||  | ||||||||||| ||||||| | ||| ||| |||||||||||| |||    
T  12412945 ttaaatttattggaaagataaagtgtgtgcaaaaaaattagaaaactattaatggattaaaatgagggtataataggaaaaaagtgtgcaaaaatacact 12413044  T
Q  156 tcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacaga 204  Q
    ||| | ||||  |||||| |||||||||||||||||||||| |||||||    
T  12413045 tcgctttttttgtgttaaaattctaaaacgacacttaaaaaggaacaga 12413093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 204
Target Start/End: Original strand, 12425005 - 12425153
Alignment:
Q  58 ttaaatttattgtagagagaaagtgtgtgcaaaaaa-taagaacatt-ttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatact 155  Q
    |||||||||||| | ||| ||||||||||||||||| | |||| | | ||  | ||||||||||| ||||||| | ||| ||| |||||||||||| |||    
T  12425005 ttaaatttattggaaagataaagtgtgtgcaaaaaaattagaaaactattaatggattaaaatgagggtataataggaaaaaagtgtgcaaaaatacact 12425104  T
Q  156 tcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacaga 204  Q
    ||| | ||||  |||||| |||||||||||||||||||||| |||||||    
T  12425105 tcgctttttttgtgttaaaattctaaaacgacacttaaaaaggaacaga 12425153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 21253028 - 21253156
Alignment:
Q  24 taacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacatt--ttggtagattaaaatgat 121  Q
    |||||| |||||||||| ||| ||| ||||||| |||||||||||| | ||| ||||||||||||||||| || || |||  ||||| |||||||||||     
T  21253028 taacaattgtttgttactagagaaaaataacatattaaatttattgaaaagataaagtgtgtgcaaaaaaaaaaaatatttattggtggattaaaatgaa 21253127  T
Q  122 ggtataacatgaagaaaatgtgcaaaaatat 152  Q
    ||||||  || || ||||| |||||||||||    
T  21253128 ggtata--ataaaaaaaatatgcaaaaatat 21253156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 33660575 - 33660758
Alignment:
Q  24 taacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa-taagaacattttggtagattaaaatgatg 122  Q
    ||||||||||||| ||  ||| ||| |||| || |||||||||||  | ||||||||  ||||||||||| || ||||||   |||  ||||||||||      
T  33660575 taacaaatgtttgctatgagagaaatataatatattaaatttattagaaagagaaagcctgtgcaaaaaaataggaacatg--ggtgaattaaaatgaga 33660672  T
Q  123 gtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacagatgga 208  Q
    |||||| |  ||||||| ||||||||||| |||| | | ||||  | ||||||||||||||||||||||||||| |||| ||||||    
T  33660673 gtataatacaaagaaaaggtgcaaaaatacactttgctatttttgtattaatattctaaaacgacacttaaaaaggaacggatgga 33660758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 196
Target Start/End: Original strand, 44898610 - 44898802
Alignment:
Q  5 tggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtg-caaaaaataagaacatt 103  Q
    |||||||| ||| | |||||||||| |||||||||| ||| ||| |||| || |||||||||||  | || ||||||||  |  ||||||||||||  |     
T  44898610 tggagaaagagaaagtaactaacaattgtttgttacgagagaaaaataatatattaaatttattaaaaagggaaagtgtaagaaaaaaaataagaattta 44898709  T
Q  104 ttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    ||||| ||||||||||| ||||||| |  || |||||||| | ||||| |||||| |  |||| || |||||||| ||||| |||||| ||||    
T  44898710 ttggtggattaaaatgagggtataatagaaataaaatgtgtagaaatacacttcgctaatttggtgctaatattccaaaaccacacttcaaaa 44898802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 201
Target Start/End: Original strand, 1397941 - 1398105
Alignment:
Q  33 tttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataacatg 132  Q
    ||||||||  || ||| ||||||| |||||||||||| | ||| ||||||||||    | ||| |||  | ||||| ||||||||||| |||||||   |    
T  1397941 tttgttacgggagaaacataacatattaaatttattggaaagataaagtgtgtg----agataggaatttattggtggattaaaatgagggtataattgg 1398036  T
Q  133 aagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    ||||||||||||||||||| || ||| | ||||| ||||||| ||||||||  ||||||| ||| ||||    
T  1398037 aagaaaatgtgcaaaaatacacatcgctattttggtgttaattttctaaaaaaacacttacaaatgaac 1398105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 211
Target Start/End: Complemental strand, 4959122 - 4958963
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacatt-ttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaata 151  Q
    |||| ||||||||| || | ||| ||||||||||||||||| ||| | ||| || || ||||||||||| ||||||| | ||| ||| |||||||| |||    
T  4959122 acatattaaatttaatggaaagataaagtgtgtgcaaaaaaaaaggaaattattagtggattaaaatgagggtataataggaaaaaagtgtgcaaagata 4959023  T
Q  152 tacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacagatggaata 211  Q
     |||| | | ||||  |||||| | |||||||| ||||||||||| |||| || ||||||    
T  4959022 cactttgctattttagtgttaaaactctaaaacaacacttaaaaaggaacggagggaata 4958963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 45271976 - 45271885
Alignment:
Q  58 ttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaa 149  Q
    |||||||||||| | ||| |||||||||||||||||||| ||  |  |||| ||||||||||| ||||||| | ||||||||||| ||||||    
T  45271976 ttaaatttattggaaagataaagtgtgtgcaaaaaataaaaatgtaatggtggattaaaatgagggtataataggaagaaaatgtacaaaaa 45271885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 208
Target Start/End: Complemental strand, 34424521 - 34424365
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgcaaa-aaataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaata 151  Q
    |||| |||||||||||| | ||| |||||||||||||| ||||| |||  | |  || ||||||||| | ||||||| |  || ||| |||| |||||||    
T  34424521 acatattaaatttattggaaagataaagtgtgtgcaaagaaataggaaattatcagtggattaaaataagggtataatagaaaaaaagtgtgtaaaaata 34424422  T
Q  152 tacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacagatgga 208  Q
     |||||| | ||||  |||||| ||| |||||||||||||||||| |||| ||||||    
T  34424421 cacttcgctatttttgtgttaaaattttaaaacgacacttaaaaaggaacggatgga 34424365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 150036 - 149973
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatt 64  Q
    ||||||||| |||||||| |||||||||| |||||||||||||| |||| || ||| |||||||    
T  150036 ttgttggagtaaaagataataactaacaattgtttgttacaagagaaagctagcatattaaatt 149973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 201
Target Start/End: Original strand, 27746967 - 27747109
Alignment:
Q  58 ttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacatt-ttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatactt 156  Q
    |||||||||||| | | | |||||||||||||||||  || | ||| || || ||||||||||| ||||||| | ||| |||| |||||||||||| |||    
T  27746967 ttaaatttattggaaaaataaagtgtgtgcaaaaaaataggaaattattagtggattaaaatgagggtataata-gaaaaaaa-gtgcaaaaatatgctt 27747064  T
Q  157 cgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
     | | ||||  | |||| |||||||||||||||||||||| ||||    
T  27747065 agctatttttgttttaaaattctaaaacgacacttaaaaaggaac 27747109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 45272990 - 45272930
Alignment:
Q  5 tggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaattt 65  Q
    |||||||||||||| ||||| |||| || ||||||| ||| ||| ||||||| ||||||||    
T  45272990 tggagaaaaagataataactgacaattgcttgttacgagagaaatataacatattaaattt 45272930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 5794 - 5616
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa--taaga 98  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| |||||||||||| | |||||||||||||||||||||  || ||    
T  5794 ttgttggagaaaaagatagtaactaacaaatgtttgttacaagagaaaaataacatattaaatttattgaaaagagaaagtgtgtgcaaaaaaattagga 5695  T
Q  99 acattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatatt 177  Q
    | || || ||  ||||||||||||||||||   |||||||||||||||||||| |||| | | ||||||||||||||||    
T  5694 atatattagtgaattaaaatgatggtataattggaagaaaatgtgcaaaaatacactttgctattttgatgttaatatt 5616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0841 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: scaffold0841
Description:

Target: scaffold0841; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 4026 - 3830
Alignment:
Q  2 tgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataa--gaa 99  Q
    ||||||||||||| | | ||||||||||||||||||||| ||| ||| |||||||||||||||||||| | ||||||||||||||||||||| ||  |||    
T  4026 tgttggagaaaaacacaataactaacaaatgtttgttacgagagaaaaataacatgttaaatttattggaaagagaaagtgtgtgcaaaaaaaaaaggaa 3927  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
     || ||| ||||||||||||| ||||||| | ||||||||  || ||||||| |||||||| ||||  |||||||||| |||||||||| |||||||    
T  3926 tatattgttagattaaaatgagggtataataggaagaaaaactgaaaaaatacacttcgttattttagtgttaatattttaaaacgacatttaaaaa 3830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0841; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 4344 - 4148
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataa-gaa 99  Q
    |||||||||||||| | ||| ||||||||||||||||||| ||| |||||||| || |||||||||||| | ||||||||||||||||||||| || |||    
T  4344 ttgttggagaaaaacacattgactaacaaatgtttgttacgagagaaagataatatattaaatttattggaaagagaaagtgtgtgcaaaaaaaaaggaa 4245  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
     || ||||| ||||||||||| ||||||| | ||||||||  | ||||||||||||||||| ||||  |||||||||| | |||||||  |||||||    
T  4244 tatattggtggattaaaatgagggtataataggaagaaaaactacaaaaatatacttcgttattttattgttaatattatgaaacgacttttaaaaa 4148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0841; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 5108 - 5163
Alignment:
Q  145 aaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaa 200  Q
    |||||||||||| ||| ||||  |||||||||| |||||||||| |||||||||||    
T  5108 aaaaatatactttgttattttagtgttaatattttaaaacgacatttaaaaaagaa 5163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 177
Target Start/End: Original strand, 14897001 - 14897175
Alignment:
Q  4 ttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaa-aaaataagaacat 102  Q
    |||||||||||||||  |||||||||||||||||||| ||| ||| ||||||| |||||||||||| | |||||||| |||||||| |||||||||| ||    
T  14897001 ttggagaaaaagataggaactaacaaatgtttgttacgagagaaatataacatattaaatttattgaaaagagaaagcgtgtgcaagaaaataagaatat 14897100  T
Q  103 tttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatatt 177  Q
     ||||| ||||||||||| || |||| |  ||||||||||||||||||| |||||| | ||||||||||||||||    
T  14897101 attggtggattaaaatgagggcataatagaaagaaaatgtgcaaaaatacacttcgctcttttgatgttaatatt 14897175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 5871265 - 5871461
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgc-aaaaaataagaa 99  Q
    |||||||||||||| ||| ||| | |||| |||||||||||||| ||| ||||||| ||||||| |||| | | | ||| ||||||| |||||||| |||    
T  5871265 ttgttggagaaaaaaataataattgacaattgtttgttacaagagaaaaataacatattaaattcattggaaaaataaaatgtgtgcgaaaaaataggaa 5871364  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
      | ||||| ||||||||||| ||||||| | |||||||||||| |||||||||| ||| |  |||||| ||||| || ||||| ||||||||||||    
T  5871365 tttattggtggattaaaatgaaggtataataggaagaaaatgtgtaaaaatatacatcgctaatttgatattaattttttaaaaagacacttaaaaa 5871461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 34039304 - 34039500
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaa-aaaataagaa 99  Q
    |||||||||||||| ||| |||||||||||| |||||||  ||| |||||||| || ||||| |||||| | ||||||| ||||||||| |||||| |||    
T  34039304 ttgttggagaaaaatatagtaactaacaaatatttgttatgagagaaagataatatattaaacttattggaaagagaaaatgtgtgcaagaaaataggaa 34039403  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
     || ||||| |||||||| || | || || |  ||||||||||| ||||||| ||||| || ||||  |||||| |||||||||||||| |||||||    
T  34039404 tatattggtggattaaaacgaggataaaatagaaagaaaatgtgtaaaaatacacttcattatttttgtgttaaaattctaaaacgacatttaaaaa 34039500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 7695083 - 7694941
Alignment:
Q  8 agaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaa-aaaataagaacattttg 106  Q
    |||||||| || ||||| |||| |||||||||||||| ||||||||||| |||||||||||| | ||| ||||||||||||| |||||| |||  | ||     
T  7695083 agaaaaaggtaataactgacaattgtttgttacaagagaaagataacatattaaatttattgaaaagataaagtgtgtgcaaaaaaataggaatttattt 7694984  T
Q  107 gtagattaaaatgatggtataacatgaagaaaatgtgcaaaaa 149  Q
    |||||||||||||| | ||||| | ||||||||||||||||||    
T  7694983 gtagattaaaatgaggatataataggaagaaaatgtgcaaaaa 7694941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 38401963 - 38402160
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    |||||||||||||||||| |||| | ||| |||||||||  ||| || |||||||| |||| ||||||| | ||| |||||||||||||||| ||||||     
T  38401963 ttgttggagaaaaagataataacga-caattgtttgttatgagagaatgataacatattaagtttattggaaagataaagtgtgtgcaaaaattaagaat 38402061  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaa 200  Q
     | | ||| ||||||||||| ||||||| | |||  ||||||||||||||| || | | | ||||||||||||| |||||||| |||||||||||| |||    
T  38402062 ttatcggtggattaaaatgagggtataata-gaaagaaatgtgcaaaaatacacattgctattttgatgttaat-ttctaaaaagacacttaaaaaggaa 38402159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 206
Target Start/End: Complemental strand, 35970224 - 35970067
Alignment:
Q  49 gataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaa 148  Q
    |||||||| |||||||||||| | | |||||| ||||| |||||||| ||| || ||||| |||||||| || ||||| | | |||||||||||||||||    
T  35970224 gataacatattaaatttattggaaaaagaaagcgtgtgaaaaaaataggaatatattggtggattaaaacgagggtatgataggaagaaaatgtgcaaaa 35970125  T
Q  149 atatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacagatg 206  Q
    ||| |||| | |  |||| ||||||||||||||||||| | ||||||| |||| ||||    
T  35970124 atacactttgctaatttggtgttaatattctaaaacgatagttaaaaaggaacggatg 35970067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 29315399 - 29315231
Alignment:
Q  34 ttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgc-aaaaaataagaacattttggtagattaaaatgatggtataacatg 132  Q
    ||||||| ||| ||| ||||||| |||||||||||| | ||| ||||| ||||| |||||||||  | || ||||| ||||||| ||| ||||||| | |    
T  29315399 ttgttacgagaaaaatataacatattaaatttattgaaaagataaagtatgtgccaaaaaataaatatatattggtggattaaattgagggtataatagg 29315300  T
Q  133 aagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    ||||||||||||||| ||| |||| | | |||| |||  ||| ||||||||||||||||||||||||||    
T  29315299 aagaaaatgtgcaaatatacactttgctattttcatggaaattttctaaaacgacacttaaaaaagaac 29315231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 32234115 - 32234314
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    ||||| ||||||||||||  ||||||||| |||||||||| ||| ||| ||||||| |||||||||||  | | | ||||||||   |||||||| |||     
T  32234115 ttgttagagaaaaagataaaaactaacaattgtttgttacgagagaaaaataacatattaaatttattaaaaaaataaagtgtgca-aaaaaataggaat 32234213  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaa 200  Q
     | ||||| |||| |||||| ||||||| | ||||||||||| |||||||| || ||| | ||||||||| ||| ||||||||  ||||||||||| |||    
T  32234214 ttattggtggattgaaatgagggtataataggaagaaaatgtacaaaaatacacatcgctattttgatgtaaattttctaaaaaaacacttaaaaaggaa 32234313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 34146695 - 34146851
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgc-aaaaaataagaa 99  Q
    |||||||||||||||||| ||||  |||| |||||||| | | | ||||||||||| |||||||||||| | ||| ||| ||||||| ||||||||||||    
T  34146695 ttgttggagaaaaagataataacagacaattgtttgttgcgaaagaaagataacatattaaatttattggaaagataaaatgtgtgcaaaaaaataagaa 34146794  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatactt 156  Q
      | ||||| ||||||||||| ||||||| |  ||||||||||| ||||||| ||||    
T  34146795 tttattggtggattaaaatgagggtataatagaaagaaaatgtgtaaaaatacactt 34146851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 11087589 - 11087708
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    |||||||||||||||||| ||||| |||| ||||||||| |||| |||||||||||||||||||||||  | ||| ||| ||| || ||||||||||||     
T  11087589 ttgttggagaaaaagatagtaactgacaattgtttgttataagagaaagataacatgttaaatttattaaaaagataaaatgtatgaaaaaaataagaat 11087688  T
Q  101 attttggtagattaaaatga 120  Q
     | ||||| |||||||||||    
T  11087689 ttattggtggattaaaatga 11087708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 27232100 - 27232299
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa-taagaa 99  Q
    |||||||||||||||||| ||||| |||| |||||||||| ||| ||||||||||| |||||||||||  | ||| ||| ||||||||||||| ||  ||    
T  27232100 ttgttggagaaaaagataataactgacaattgtttgttacgagagaaagataacatattaaatttatttgaaagataaaatgtgtgcaaaaaactagtaa 27232199  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaaga 199  Q
      | ||||| ||||||||||| ||||||  ||||||||||||| ||||| || || ||| |  ||||   ||||| ||||||||  ||||||||||| ||    
T  27232200 tttattggttgattaaaatgagggtata--atgaagaaaatgtacaaaagtacacatcgctaatttgggtttaattttctaaaaaaacacttaaaaagga 27232297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 35970481 - 35970677
Alignment:
Q  11 aaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtag 110  Q
    |||||||| |||||||||||| |||||||  ||| ||||||||||| |||||||||||  | | |||||||||| | |||||| | ||| || ||||| |    
T  35970481 aaaagatagtaactaacaaatatttgttatgagagaaagataacatattaaatttatt-aaaaaagaaagtgtgcggaaaaaa-aggaatatattggtgg 35970578  T
Q  111 attaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgt---taatattctaaaacgacacttaaaaaagaacagatg 206  Q
    ||||||| || ||||| | | ||||||||| | | ||||||  |||||||  |||| |||   |||||||||||||| | ||||||||| |||||||||    
T  35970579 attaaaacgagggtatgataggaagaaaatatactaaaatacgcttcgttaatttggtgttaataatattctaaaacaaaacttaaaaaggaacagatg 35970677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 1530374 - 1530248
Alignment:
Q  26 acaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa-taagaacattttggtagattaaaatgatggt 124  Q
    |||| |||||||||| | | ||||||||||| |||||||||||| | ||| ||| |||||| |||||| || |||  | || |||||||||||||| |||    
T  1530374 acaattgtttgttacgaaagaaagataacatattaaatttattgaaaagataaaatgtgtggaaaaaaataggaagttatttgtagattaaaatgaaggt 1530275  T
Q  125 ataacatgaagaaaatgtgcaaaaata 151  Q
    |||| | ||||||||| ||||||||||    
T  1530274 ataataagaagaaaatttgcaaaaata 1530248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 3443464 - 3443319
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgcaaaa-aataagaacattttggtagattaaaatgatggtataacatgaagaaaa-tgtgcaaaaat 150  Q
    |||| |||||||||||| | ||| |||||||||| |||| |||| |||  | || || ||||||||||| ||||||| | ||| |||| |||||||||||    
T  3443464 acatattaaatttattggatagataaagtgtgtgaaaaagaataggaaattattagtggattaaaatgagggtataataggaaaaaaagtgtgcaaaaat 3443365  T
Q  151 atacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    | |||||| | ||||  |||||| ||||||||||||| ||||||||    
T  3443364 acacttcgctatttttgtgttaaaattctaaaacgacgcttaaaaa 3443319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 30887596 - 30887529
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttatt 68  Q
    |||||||||||||||||| ||||||||||||||||||||  ||| ||| || |||| |||||||||||    
T  30887596 ttgttggagaaaaagatagtaactaacaaatgtttgttaggagagaaaaattacatattaaatttatt 30887529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 36683451 - 36683536
Alignment:
Q  110 gattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaa 195  Q
    ||||||| ||| ||||||| | |||||||||||||||||||| |||| | | |||| |||  ||| ||||||||| ||||||||||    
T  36683451 gattaaattgagggtataataggaagaaaatgtgcaaaaatacactttgctattttcatggaaattttctaaaacaacacttaaaa 36683536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 196
Target Start/End: Complemental strand, 1256375 - 1256236
Alignment:
Q  58 ttaaatttattgtagagagaaagtgtgtgc-aaaaaataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatactt 156  Q
    |||||||||||| | ||| ||||||||||| ||||||||||||  | ||||| ||||||||| |  |||||| | | | |||||||||||||||| ||      
T  1256375 ttaaatttattggaaagataaagtgtgtgctaaaaaataagaatttattggtggattaaaattagagtataatagggaaaaaatgtgcaaaaatacacaa 1256276  T
Q  157 cgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
     | |  || | ||||||| |||||||| ||||||||||||    
T  1256275 tgctaattcggtgttaattttctaaaaagacacttaaaaa 1256236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29315455 - 29315416
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttac 40  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  29315455 ttgttggagaaaaagatagtaagtaacaaatgtttgttac 29315416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 214
Target Start/End: Original strand, 9455560 - 9455721
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgcaaaaaa-taagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaata 151  Q
    |||| |||||||||||| | | | ||| ||||||||||||| ||||||  | || ||  |||||||||| ||||||| | ||| ||| ||||||||||||    
T  9455560 acatattaaatttattggaaaaataaaatgtgtgcaaaaaagtaagaaattattagtgtattaaaatgagggtataata-gaaaaaagtgtgcaaaaata 9455658  T
Q  152 tacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacagatggaataatt 214  Q
     |||| | | ||||  |||||| ||| ||||| ||||||||||||  ||| || |||||||||    
T  9455659 cactttgctatttttgtgttaaaattttaaaatgacacttaaaaagaaacggagggaataatt 9455721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 13385441 - 13385527
Alignment:
Q  115 aaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    |||||| ||||||| | |||||||||||| ||| ||| ||||  ||  |||  ||||| ||||| ||||||||||||||||||||||    
T  13385441 aaatgagggtataataggaagaaaatgtgtaaatatacactttcttaattttgtgttactattccaaaacgacacttaaaaaagaac 13385527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3742105 - 3742142
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgtt 38  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  3742105 ttgttggagaaaaagatagtaaataacaaatgtttgtt 3742142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 7577884 - 7577823
Alignment:
Q  140 tgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    |||||||||||| |||| | | |||| ||||||| ||||||||||||| |||||||| ||||    
T  7577884 tgtgcaaaaatacacttagctatttttatgttaaaattctaaaacgacgcttaaaaaggaac 7577823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 38457747 - 38457807
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaa 61  Q
    |||||||||| |||||||  |||  |||| |||||||||||||| ||||||||||| ||||    
T  38457747 ttgttggagagaaagataacaaccgacaattgtttgttacaagagaaagataacatattaa 38457807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 16197276 - 16197471
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    |||||||| ||||||||| ||||| |||| |||||||||||||| ||||||||||| |||||||||||| | ||| ||||| | ||||||||||| |||     
T  16197276 ttgttggaaaaaaagataataactgacaattgtttgttacaagagaaagataacatattaaatttattggaaagataaagtttatgcaaaaaataggaat 16197375  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
     | ||| | ||||||||||| ||||||| |  ||||||||||||||||||| || ||  | ||||| ||||||| |||||||| ||||||||||||    
T  16197376 ttattgatggattaaaatgagggtataatagaaagaaaatgtgcaaaaatacacatcactattttggtgttaattttctaaaaagacacttaaaaa 16197471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 33258865 - 33259044
Alignment:
Q  24 taacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataa-----gaacattttggtagattaaaat 118  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||| | |   ||| ||| ||||||||| ||     ||| || ||||| |||||||||    
T  33258865 taacaaatgtttgttacaagagaaagataccatattaaatttattgaaaa---aaaatgtatgcaaaaaaaaaaataggaatatattggtggattaaaat 33258961  T
Q  119 gatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    || ||||||| | ||||||||| | |||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||    
T  33258962 gagggtataataggaagaaaatctacaaaaatacacttcgttattttggtgttaatattctaaaacgacacttaaaaaggaac 33259044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 2273430 - 2273282
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    |||||| ||||||||||| |||||||||| |||||||||| ||| |||||||||||  ||||||||||| | |||||||||||||| |||||||| |||     
T  2273430 ttgttgaagaaaaagataataactaacaattgtttgttacgagagaaagataacat--taaatttattgaaaagagaaagtgtgtgaaaaaaataggaat 2273333  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaata 151  Q
    || |||||| |||||||| | ||||||| | |||| ||| |||||||||||    
T  2273332 atattggtacattaaaataagggtataataggaagtaaaggtgcaaaaata 2273282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 28226740 - 28226941
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaa-aataagaa 99  Q
    ||||||||||||||||||||||||||||| |||||||||| | | ||||||||||| |||||||||||| | ||| | | ||||||||||| |||| |||    
T  28226740 ttgttggagaaaaagatattaactaacaattgtttgttacgatagaaagataacatattaaatttattggaaagatataatgtgtgcaaaacaataggaa 28226839  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaaga 199  Q
     || ||  | ||||||||| | ||||||| | |||| |||  | |||||||| || ||| |  |||| ||||||||||| ||||||||||||||||| ||    
T  28226840 tatattattggattaaaataagggtataataggaagtaaagatacaaaaatacacatcgctaatttggtgttaatattccaaaacgacacttaaaaatga 28226939  T
Q  200 ac 201  Q
    ||    
T  28226940 ac 28226941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 4567815 - 4568003
Alignment:
Q  8 agaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttgg 107  Q
    ||||||||||| ||| | |||| |||||||||  ||| ||| ||||||| |||||||||||| | ||| |||||||||||||||||||||||  |  |||    
T  4567815 agaaaaagataataattgacaattgtttgttatgagagaaatataacatattaaatttattggaaagataaagtgtgtgcaaaaaataagaatttagtgg 4567914  T
Q  108 tagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    | ||||||||||| ||||||| |  |||| || ||| ||||||| ||| || | ||||||||||||| |||||||| |||| |||||||    
T  4567915 tggattaaaatgagggtataatagaaagataacgtgtaaaaatacactgcgctattttgatgttaattttctaaaaagacatttaaaaa 4568003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 10534619 - 10534419
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgc-aaaaaataagaa 99  Q
    |||||||||||||||||| ||||  |||| |||||||||| | ||||||||||||| |||||||||||  | | | ||| ||||||| |||||||| |||    
T  10534619 ttgttggagaaaaagataataacagacaattgtttgttacgacataaagataacatattaaatttattaaaaaaataaaatgtgtgcaaaaaaataggaa 10534520  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaaga 199  Q
      | ||||| ||||||||||| ||||||| |  || |||| ||||||||||| || ||||| ||||| ||||||| |||||||| |||| ||||||| ||    
T  10534519 tttattggtggattaaaatgaaggtataata-aaaaaaaaagtgcaaaaatacacatcgttattttggtgttaattttctaaaaagacatttaaaaagga 10534421  T
Q  200 ac 201  Q
    ||    
T  10534420 ac 10534419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 2271533 - 2271339
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaa-aataagaa 99  Q
    |||||||||||| ||||| ||||| |||| |||||||||| ||| ||| ||||||| ||||||| |||| | ||| |||| ||||| |||| ||||||||    
T  2271533 ttgttggagaaagagataataactgacaattgtttgttacgagagaaa-ataacatattaaatt-attggaaagataaagggtgtggaaaacaataagaa 2271436  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
      |  |||||||||||||||| | ||||| | |||||||||||||||||||| || ||| | ||||| ||||||| | |||||| ||||||||||||    
T  2271435 tttagtggtagattaaaatgaggatataataggaagaaaatgtgcaaaaatacacatcgctattttggtgttaatttcctaaaaagacacttaaaaa 2271339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 17270035 - 17270235
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    |||||| ||||||||||| || |||||||||||||||||| ||| ||| |||| || |||||| ||||| |  |||||||||| | ||||||||| |||     
T  17270035 ttgttgtagaaaaagatagtatctaacaaatgtttgttacgagagaaatataatatattaaatatattgaaacgagaaagtgtatacaaaaaataggaat 17270134  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaa 200  Q
    |  ||| | |||||||||||  |||||| | | | |||||||| ||||| | ||||| || ||||| | ||||| ||||||||||||||||||||| |||    
T  17270135 aaattgatggattaaaatgagagtataatagggaaaaaatgtgtaaaaacacacttcattattttggtattaattttctaaaacgacacttaaaaaggaa 17270234  T
Q  201 c 201  Q
    |    
T  17270235 c 17270235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 37124629 - 37124799
Alignment:
Q  26 acaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggta 125  Q
    |||| |||||||||  ||| ||||||||||| |||||||||||| | ||| ||||||||||||||||| | |||  | || || ||||||||| | ||||    
T  37124629 acaattgtttgttatgagagaaagataacatattaaatttattggaaagataaagtgtgtgcaaaaaaaatgaatttatttgttgattaaaatcagggta 37124728  T
Q  126 taacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    ||| | |||||||||||||||||| | || | | | |||||||| |||| |||||||| ||||||||||||    
T  37124729 taataggaagaaaatgtgcaaaaacacacattgctattttgatgctaattttctaaaaagacacttaaaaa 37124799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 43368974 - 43369172
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    |||||||||||||| ||| |||||||||| || ||||||| ||| ||| ||||||| |||||||||||| | |||||  ||||||||||||||  ||||     
T  43368974 ttgttggagaaaaaaataataactaacaattgcttgttacgagagaaaaataacatattaaatttattgaaaagaga--gtgtgtgcaaaaaaatagaaa 43369071  T
Q  101 -attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaaga 199  Q
     || || || ||||||| | | |||||||||  ||| ||| |||||||| || ||||  ||  |||| ||||||||||||||||||||||||||||| ||    
T  43369072 tatatttgtggattaaagtaagggtataacagtaagtaaaggtgcaaaattacacttt-ttaatttggtgttaatattctaaaacgacacttaaaaagga 43369170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 39618117 - 39618314
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaa-aataagaa 99  Q
    |||||| ||||||| ||| |||||  ||| |||||||||  ||| ||| |||||||  ||||||||||| | ||| ||| | ||||||||| ||||||||    
T  39618117 ttgttgaagaaaaatataataactggcaattgtttgttatgagagaaaaataacat--taaatttattggaaagataaaatatgtgcaaaaaaataagaa 39618214  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaaga 199  Q
      | ||||| ||||||||||| ||||||| | |||||||||||||||||||| || ||  | |||| |||||||| |||||||| ||||| | |||||||    
T  39618215 tttattggtggattaaaatgagggtataataggaagaaaatgtgcaaaaatacacatctatatttttatgttaattttctaaaaagacacatgaaaaaga 39618314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 10025981 - 10025846
Alignment:
Q  24 taacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgc-aaaaaataagaacattttggtagattaaaatgatg 122  Q
    |||||| |||||||||||| | ||||||||||| |||||||||||| | ||||||| ||||||| |||||| | |||  | ||| | ||||||||| | |    
T  10025981 taacaattgtttgttacaaaagaaagataacatattaaatttattgaaaagagaaattgtgtgctaaaaaacatgaatgtattgatggattaaaataagg 10025882  T
Q  123 gtataacatgaagaaaatgtgcaaaaatatacttcg 158  Q
    |||||||| |||| ||||||||||||||| ||||||    
T  10025881 gtataacaagaagtaaatgtgcaaaaataaacttcg 10025846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 41747104 - 41746904
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    ||||| |||||||| ||| |||||||||| |||||||||| ||| |||||||| || |||||||||||| | |||||||||| ||| ||||||||  ||     
T  41747104 ttgttagagaaaaatatagtaactaacaattgtttgttacgagagaaagataaaatattaaatttattgaaaagagaaagtgcgtgaaaaaaatagaaat 41747005  T
Q  101 attttggtagatta-aaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaaga 199  Q
    || ||  | ||||| ||| ||  ||| || |||| | ||||||| ||||||| | |||| |  ||||||||| |||||  ||||||||||||||||||||    
T  41747004 atattaatggattacaaaaga--gtacaatatgaggtaaatgtgtaaaaatacatttcgctaatttgatgttgatatttcaaaacgacacttaaaaaaga 41746907  T
Q  200 aca 202  Q
    |||    
T  41746906 aca 41746904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 2798792 - 2798985
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgc-aaaaaataagaa 99  Q
    |||||||||||||| ||| ||| ||| || |||||||||| ||  ||||||||||| |||||||||||  | ||||||||||||||| ||||||||  ||    
T  2798792 ttgttggagaaaaatatagtaattaaaaattgtttgttacgagcgaaagataacatattaaatttattagaaagagaaagtgtgtgcaaaaaaatagaaa 2798891  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaa 193  Q
     || ||||| ||||| ||| | ||||||| | |||| |||  |||||||||| |||||  |  |||| ||||||||||  ||||||||| ||||    
T  2798892 tatattggtggattagaataagggtataataggaagtaaagatgcaaaaatacacttcactaatttggtgttaatatttcaaaacgacatttaa 2798985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 201
Target Start/End: Original strand, 27723738 - 27723904
Alignment:
Q  31 tgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataaca 130  Q
    ||||||||||| || ||| ||||||| |||||||||||| | ||| ||||||||||    |||||  ||  | ||||| ||||||||||| ||||||| |    
T  27723738 tgtttgttacaggagaaaaataacatattaaatttattggaaagataaagtgtgtg----aaatagaaatttattggtggattaaaatgagggtataata 27723833  T
Q  131 tgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
     ||||||||| |  |||||||||| ||| | ||||| ||||||| |||||||||||||||| |||| ||||    
T  27723834 ggaagaaaatatttaaaaatatacatcgctattttggtgttaattttctaaaacgacacttcaaaaggaac 27723904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 31 - 204
Target Start/End: Complemental strand, 3835417 - 3835243
Alignment:
Q  31 tgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaa-aaaataagaacattttggtagattaaaatgatggtataac 129  Q
    |||||||||||||| ||||||||||| |||||||||||| | ||| ||||||||||||| |||||| |||  | || || ||||||||||| | |||||     
T  3835417 tgtttgttacaagagaaagataacatattaaatttattggaaagataaagtgtgtgcaaaaaaataggaatttattcgtggattaaaatgaggatataat 3835318  T
Q  130 atgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacaga 204  Q
    | |||||||   || ||||||| || ||| | |||||||| |||| || | |||  ||||||||||| |||||||    
T  3835317 aggaagaaatcatggaaaaatacacatcgctattttgatggtaatttttttaaaaaacacttaaaaaggaacaga 3835243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 201
Target Start/End: Complemental strand, 4962694 - 4962546
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatat 152  Q
    |||| |||||||||||| | ||| ||||||||||||||||||| |||  | || || ||||||||||| ||||||| | ||| ||| |||| |||||||     
T  4962694 acatattaaatttattggaaagataaagtgtgtgcaaaaaataggaaattattagttgattaaaatgagggtataataggaaaaaagtgtgaaaaaatac 4962595  T
Q  153 acttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    | |||  | ||||  |||||| ||||||||||| |||||||||| ||||    
T  4962594 atttcactatttttgtgttaaaattctaaaacggcacttaaaaaggaac 4962546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 41690210 - 41690366
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgc-aaaaaataagaa 99  Q
    |||||||||||||||||| ||| | |||| |||||||||| ||||||| ||||||| |||||||||||| | | | ||||| ||||| ||||| || |||    
T  41690210 ttgttggagaaaaagataataattgacaattgtttgttacgagataaatataacatattaaatttattggaaatataaagtttgtgctaaaaagtaggaa 41690309  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatactt 156  Q
      | || ||  |||||||||| ||||||| |  ||||||||||| ||||||| ||||    
T  41690310 tttattcgtgaattaaaatgagggtataataaaaagaaaatgtgtaaaaatacactt 41690366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 197
Target Start/End: Complemental strand, 27062169 - 27061974
Alignment:
Q  2 tgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaaca 101  Q
    ||||| ||||||||| | |||||||| | || ||||||  | | |||||||||| || |||||||||| | |||||||   |||  ||||||||||||      
T  27062169 tgttgaagaaaaagaaagtaactaacgattgattgttatgaaagaaagataacacgtcaaatttattggaaagagaaaaaatgtaaaaaaaataagaatt 27062070  T
Q  102 ttttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaa 197  Q
    | || || | ||||| ||| |||||||||  |||||||| |||||||||||||||| ||  |||  |||||  |||| ||||||||||||||||||    
T  27062069 tatttgtgggttaaattgagggtataacagaaagaaaatatgcaaaaatatacttccttaattttgtgttacaattccaaaacgacacttaaaaaa 27061974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 39599555 - 39599424
Alignment:
Q  1 ttgttggagaaaaagatattaac---taacaaatgtttgttacaagataaagataacatgttaaatttattgta--gagagaaagtgtgtgcaaaaaata 95  Q
    |||||||||||||||||| ||||   ||||||  ||||||||| | | ||| |||| || |||||||||||| |  ||||||||||||||||||||||||    
T  39599555 ttgttggagaaaaagatagtaacaactaacaatcgtttgttacgaaagaaaaataagatattaaatttattgaaaagagagaaagtgtgtgcaaaaaata 39599456  T
Q  96 agaacattttggtagattaaaatgatggtata 127  Q
     ||| || ||||| ||||||||| | ||||||    
T  39599455 ggaatatattggtggattaaaattagggtata 39599424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 8614716 - 8614565
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataa--ga 98  Q
    |||||||||||||||||| ||||| |||| |||||||||| ||| |||||||| || |||| ||||||  | ||| ||||||||||||||||| |   ||    
T  8614716 ttgttggagaaaaagataataactgacaattgtttgttacgagagaaagataatatattaa-tttattagaaagataaagtgtgtgcaaaaaaaagagga 8614618  T
Q  99 acattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaata 151  Q
    |  | ||||| ||||||||||| ||||||| |  ||| |||||||| ||||||    
T  8614617 atttattggtggattaaaatgaaggtataataaaaagcaaatgtgctaaaata 8614565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 39434426 - 39434576
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgca-aaaaataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaata 151  Q
    |||| |||||||||||| | ||| |||||||||||| ||||||| |||  | || || ||||||||| | ||||||| | ||| ||| ||||||||||||    
T  39434426 acatattaaatttattggaaagataaagtgtgtgcacaaaaataggaaattattagtcgattaaaataagggtataataggaaaaaagtgtgcaaaaata 39434525  T
Q  152 tacttcgttgttttgatgttaata-ttctaaaacgacacttaaaaaagaac 201  Q
     |||||| | ||||  | |||| | ||||||||||||||||||||| ||||    
T  39434526 cacttcgctatttttgtattaaaaattctaaaacgacacttaaaaaggaac 39434576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 12394659 - 12394740
Alignment:
Q  10 aaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaa 91  Q
    ||||||||| ||||| |||| |||||||||  ||| |||||||||||||||||||||||| | ||  ||| |||||||||||    
T  12394659 aaaaagataataactgacaattgtttgttaagagagaaagataacatgttaaatttattggaaagctaaaatgtgtgcaaaa 12394740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 35792699 - 35792635
Alignment:
Q  4 ttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttatt 68  Q
    ||||||||||||||| ||| | |||| |||||||||| ||| ||||||||||| |||||||||||    
T  35792699 ttggagaaaaagataataagttacaattgtttgttacgagagaaagataacatattaaatttatt 35792635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 7808891 - 7808798
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaat 94  Q
    |||||||||||| ||  | |||||||||  |||||||||  ||| ||| ||||||| |||||||||||| | ||||||| | ||||||||||||    
T  7808891 ttgttggagaaagagggagtaactaacatttgtttgttatgagagaaatataacatattaaatttattgaaaagagaaattttgtgcaaaaaat 7808798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 12394780 - 12394868
Alignment:
Q  104 ttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacactta 192  Q
    ||||| |||||||||||  |||||| | |||||||||||||||||||  || || || ||||| |||| || |||||||| ||||||||    
T  12394780 ttggtggattaaaatgagagtataataggaagaaaatgtgcaaaaatgcacatcattattttggtgttcattttctaaaaagacactta 12394868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 1752138 - 1752047
Alignment:
Q  110 gattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    |||||| |||| ||||||| |  ||||||||||| ||||||| ||||| ||   ||| ||||| ||||| ||||| ||||||||||||||||    
T  1752138 gattaacatgagggtataatagaaagaaaatgtgaaaaaatacacttccttaaattggtgttattattccaaaacaacacttaaaaaagaac 1752047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 27229095 - 27229006
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa 93  Q
    |||||| ||||||||| | |||||||||| |||||||||   |||||||||||||  ||||||   ||| | ||||||||||| |||||||||    
T  27229095 ttgttgaagaaaaagagagtaactaacaattgtttgttatgtgataaagataacacattaaat---ttggaaagagaaagtgtttgcaaaaaa 27229006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 201
Target Start/End: Complemental strand, 46671774 - 46671628
Alignment:
Q  58 ttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacatt-ttggtagattaaaatgatggtataacatgaagaaaa-tgtgcaaaaatatact 155  Q
    |||||||||||| | | | |||||||||||||||||  |||| ||| || || | ||||||||| ||||||| | ||| |||| ||||||||||||  ||    
T  46671774 ttaaatttattggaaaaataaagtgtgtgcaaaaaaatagaaaattattagtggcttaaaatgagggtataataggaaaaaaattgtgcaaaaataccct 46671675  T
Q  156 tcgttgttttgatgtt-aatattctaaaacgacacttaaaaaagaac 201  Q
    | | | ||||  |||| || |||||||||||||||||||||| ||||    
T  46671674 ttgctatttttgtgttaaaaattctaaaacgacacttaaaaaggaac 46671628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 39599384 - 39599315
Alignment:
Q  132 gaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    |||| ||||||||||||||  |||||| |  |||  |||||||||||| |||||||| ||||||||||||    
T  39599384 gaagtaaatgtgcaaaaattcacttcgctaatttcgtgttaatattcttaaacgacatttaaaaaagaac 39599315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 9589203 - 9589380
Alignment:
Q  23 ctaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataaga----acattttggtagattaaaat 118  Q
    ||||| |||||||||||||||||||| ||||||| |||||||||||| | ||||||||| ||||||||||| ||||    | || ||||| |||||||||    
T  9589203 ctaacgaatgtttgttacaagataaaaataacatattaaatttattgaaaagagaaagtttgtgcaaaaaaaaagaaggtatatattggtggattaaaat 9589302  T
Q  119 gatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    || |||| || | |||||||| ||||||||||| |||| | | ||||| |||||||||||||||| ||||||||||||    
T  9589303 gagggtacaataggaagaaaaagtgcaaaaatacactttgctattttggtgttaatattctaaaatgacacttaaaaa 9589380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 45647018 - 45647218
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    |||||||||||||||||| ||| | |||| |||||||||  ||| ||||||||||| |||||||||||| | ||| ||||||||||||||||||| |||     
T  45647018 ttgttggagaaaaagataataagtgacaattgtttgttatgagagaaagataacatattaaatttattggaaagataaagtgtgtgcaaaaaatatgaat 45647117  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaa 200  Q
     | |||   ||||||||||| ||||||| | ||||||||||||||| |||| || ||| | |||| |||||||| ||||||||  ||||||||||| |||    
T  45647118 ttattgacggattaaaatgagggtataataggaagaaaatgtgcaagaatacacatcgctatttttatgttaattttctaaaaaaacacttaaaaatgaa 45647217  T
Q  201 c 201  Q
    |    
T  45647218 c 45647218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 296874 - 297070
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    |||||||  ||||||||| ||||||||||||||||||||  ||  ||||||| | | ||||||| |||| | |||||||||||||||||||||  ||||     
T  296874 ttgttggtaaaaaagatagtaactaacaaatgtttgttatgagcgaaagataccgtattaaattaattgaaaagagaaagtgtgtgcaaaaaaatagaaa 296973  T
Q  101 -attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
     || ||||| |  |||||||| ||||||  | ||||||||||| |||||||| |||||| | ||||| |||||||||||||||||||||||||||||    
T  296974 tatattggtggtataaaatgagggtatagtaggaagaaaatgtacaaaaatacacttcgctattttggtgttaatattctaaaacgacacttaaaaa 297070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 376138 - 376322
Alignment:
Q  2 tgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgc-aaaaaataagaac 100  Q
    |||||||||||| |||| |||| |||||||||||||||| ||| ||||||||||| |||||||| ||| | ||||||||||||||| ||||||||| ||     
T  376138 tgttggagaaaaggatagtaaccaacaaatgtttgttaccagagaaagataacatattaaatttgttggaaagagaaagtgtgtgcaaaaaaataaaaat 376237  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacga 186  Q
    || ||| | ||||||||||| ||||||||| ||||||||  |  ||||||| |||||| | ||||  |||||||||| ||||||||    
T  376238 atattgatggattaaaatga-ggtataacaggaagaaaagattaaaaaatacacttcgctatttttgtgttaatattataaaacga 376322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 2599482 - 2599683
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa-taagaa 99  Q
    ||||||| |||||||||| ||||| ||||  ||||||||| ||| ||||||||||| |||||||||||| | ||| |||| || ||||||||| || |||    
T  2599482 ttgttggtgaaaaagataataactgacaatggtttgttacgagagaaagataacatattaaatttattggaaagataaagagtctgcaaaaaagtatgaa 2599581  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaaga 199  Q
      | ||||| ||||||||||| ||||||| | ||| |||||||||||||||| || ||| | ||||  ||||||| |||||||| |||||||||||| ||    
T  2599582 tttattggtggattaaaatgagggtataataggaataaaatgtgcaaaaatacacatcgctattttagtgttaattttctaaaaagacacttaaaaagga 2599681  T
Q  200 ac 201  Q
    ||    
T  2599682 ac 2599683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 16237185 - 16236986
Alignment:
Q  3 gttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaa-aaaataagaaca 101  Q
    |||| ||||||||||| ||||| |||  |||||||||| ||| ||| ||||||| |||||||||||| ||||| ||||||||||||| |||||| |||      
T  16237185 gttgaagaaaaagataataactgacagttgtttgttacgagagaaaaataacattttaaatttattggagagataaagtgtgtgcaagaaaataggaatt 16237086  T
Q  102 ttttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    | ||  | ||||||||||| ||||||| | |||||||||||| ||||||| || ||| | ||||  ||||||| |||||||| |||||||||||| ||||    
T  16237085 tatttatggattaaaatgagggtataataggaagaaaatgtgaaaaaatacacatcgctatttttgtgttaattttctaaaaagacacttaaaaaggaac 16236986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 38750602 - 38750451
Alignment:
Q  50 ataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaa 149  Q
    ||||||| |||||||||||| | ||| ||||||||||| ||||||||  | || ||||| ||||||| |||  |||||| | ||||||||||||||||||    
T  38750602 ataacatattaaatttattggaaagataaagtgtgtgccaaaaataaagatatattggtggattaaattgagagtataataggaagaaaatgtgcaaaaa 38750503  T
Q  150 tatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    || |||| | | |||| |||  ||| ||||||||||||||||||||| ||||    
T  38750502 tacactttgctattttcatgaaaattttctaaaacgacacttaaaaaggaac 38750451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 27817858 - 27818071
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataac-----atgttaaatttattgtagagagaaagtgtgtgc-aaaaaat 94  Q
    ||||||||||||||| || ||||| | || |||||||||||| | |||||||||     || |||||||||||| | ||| ||| ||||||| |||||||    
T  27817858 ttgttggagaaaaagttaataactgataattgtttgttacaaaagaaagataacatattatattaaatttattgaaaagataaaatgtgtgcaaaaaaat 27817957  T
Q  95 aagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaa 194  Q
    | |||  | ||||| ||||||||| | ||||||| | ||| |||||||||||||||  || ||||| ||||  ||||||| ||||||||  |||||||||    
T  27817958 aggaatttattggtggattaaaataagggtataataggaataaaatgtgcaaaaatgcacatcgttatttttgtgttaattttctaaaaaaacacttaaa 27818057  T
Q  195 aaagaacagatgga 208  Q
    || |||| ||||||    
T  27818058 aaggaacggatgga 27818071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 45667859 - 45667987
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaa-aaaataagaa 99  Q
    |||||||||||||| ||| ||||| |||| ||||||||||   | ||||||||||| |||||||||||| | ||| ||||||||||||| ||||||||||    
T  45667859 ttgttggagaaaaatataataactgacaattgtttgttacggaagaaagataacatattaaatttattgaaaagataaagtgtgtgcaagaaaataagaa 45667958  T
Q  100 cattttggtagattaaaatgatggtataa 128  Q
      | ||||| ||||||||||| |||||||    
T  45667959 tttattggtggattaaaatgaaggtataa 45667987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 6749366 - 6749516
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagaga-gaaagtgtgtgcaaaaaataagaa 99  Q
    |||||||||||| ||||| ||||||| || |||||||||||||| ||| ||||||| |||||||||||| ||| | |||| |||| ||||||||||||||    
T  6749366 ttgttggagaaagagatagtaactaaaaattgtttgttacaagagaaaaataacatattaaatttattg-agaaaggaaaatgtgcgcaaaaaataagaa 6749464  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaata 151  Q
      | |||||  ||||||| || ||||||| |  ||||||||||| |||||||    
T  6749465 tttattggtgcattaaaacgagggtataatagaaagaaaatgtgtaaaaata 6749516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 1405305 - 1405506
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtg----caaaaaataa 96  Q
    |||||||||||||||| | |||||||||| |||||||||| ||| ||||||||||| |||||||||||| | ||||| ||||||||     |||||| ||    
T  1405305 ttgttggagaaaaaga-agtaactaacaattgtttgttacgagagaaagataacatattaaatttattggaaagagatagtgtgtgaagaaaaaaaaaaa 1405403  T
Q  97 g-aacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaa 195  Q
    | ||  | || || ||||||||| | ||||||| | |||| ||| ||||||||||| ||||| ||  |||| ||||||||||| ||||  |||||| |||    
T  1405404 gcaatttattagtggattaaaataagggtataataggaagtaaaagtgcaaaaatacacttcattaatttggtgttaatattccaaaataacactttaaa 1405503  T
Q  196 aag 198  Q
    |||    
T  1405504 aag 1405506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 2094196 - 2094343
Alignment:
Q  5 tggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacatt- 103  Q
    |||||||||||||| ||||| |||| | |||||||| ||| ||||||||||| |||||||| ||| | ||| ||||||||| |||||||  ||||  ||     
T  2094196 tggagaaaaagataataactgacaattatttgttacgagagaaagataacatattaaattttttgaaaagataaagtgtgtccaaaaaaatagaaattta 2094295  T
Q  104 ttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaata 151  Q
    ||||| |||||||  ||  |||||| | ||||||||||||||||||||    
T  2094296 ttggtggattaaaccgagagtataataggaagaaaatgtgcaaaaata 2094343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 21916014 - 21916138
Alignment:
Q  30 atgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtg-caaaaaataagaacattttggtagattaaaatgatggtataa 128  Q
    ||||||||||||||| ||| |||| || |||||||||||| | ||| |||||||||| ||||||||| ||| || ||||| | ||||| ||| |||||      
T  21916014 atgtttgttacaagaaaaatataaaatattaaatttattggaaagataaagtgtgtgtcaaaaaataggaatatattggtgggttaaattgaaggtat-- 21916111  T
Q  129 catgaagaaaatgtgcaaaaatatactt 156  Q
     | |||||||||||||||||||||||||    
T  21916112 -aggaagaaaatgtgcaaaaatatactt 21916138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 201
Target Start/End: Complemental strand, 21959443 - 21959318
Alignment:
Q  77 aaagtgtgtgcaaaaaataagaacatt-ttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaata 175  Q
    |||||||||||||||||  || | ||| || || ||||||||||| ||||||| | ||| ||  |||||||||| | |||||||| |||| ||||||| |    
T  21959443 aaagtgtgtgcaaaaaaataggaaattattagtggattaaaatgagggtataataggaaaaaggtgtgcaaaaagacacttcgttatttttatgttaaaa 21959344  T
Q  176 ttctaaaacgacacttaaaaaagaac 201  Q
    || |||||||||||||||||||||||    
T  21959343 ttttaaaacgacacttaaaaaagaac 21959318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 1273109 - 1273191
Alignment:
Q  132 gaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacagatggaataatt 214  Q
    ||||||||| |||||||||| |||||  |||||||||||||| |||  |||||||||||||||||  |||||| |||||||||    
T  1273109 gaagaaaatttgcaaaaatacacttcaatgttttgatgttaaaatttcaaaacgacacttaaaaagaaacagagggaataatt 1273191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 196
Target Start/End: Complemental strand, 6472430 - 6472240
Alignment:
Q  4 ttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagaga-gaaagtgtgtgcaaaaaataagaacat 102  Q
    ||||||||| ||||| ||||||| || |||||||||||||| ||| ||||||  |||||||||||| ||| | |||| |||| ||||||||||||||  |    
T  6472430 ttggagaaagagatagtaactaaaaattgtttgttacaagagaaaaataaca--ttaaatttattg-agaaaggaaaatgtgcgcaaaaaataagaattt 6472334  T
Q  103 tttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
     ||||| |||||||| || ||||||| |  || |||||||| ||||||| | || | |  |||  ||||||||||| ||||||| | |||||||    
T  6472333 attggtggattaaaacgagggtataatagaaaaaaaatgtgtaaaaatacattttgctaatttagtgttaatattccaaaacgataattaaaaa 6472240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 201
Target Start/End: Complemental strand, 21934065 - 21933900
Alignment:
Q  35 tgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataacatgaa 134  Q
    |||||| ||| ||| ||||||| |||||||||||| | ||| ||||||||  |||||||||   | || || || ||||||| ||| |||||||    ||    
T  21934065 tgttacgagaaaaatataacatattaaatttattggaaagataaagtgtgc-caaaaaatagagatatattagtggattaaattgagggtataatcgtaa 21933967  T
Q  135 gaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    ||||||||||||||||| |||| | | |||| |||  ||| ||||||||||||||||||||||||||    
T  21933966 gaaaatgtgcaaaaatacactttgctattttcatgaaaattttctaaaacgacacttaaaaaagaac 21933900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 19229429 - 19229316
Alignment:
Q  26 acaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggta 125  Q
    ||||||||||||||  ||| ||| ||||||| |||||||||||| | ||||||||| ||||||||||||| |   || || || ||||||||||| ||||    
T  19229429 acaaatgtttgttatcagagaaaaataacatattaaatttattggaaagagaaagtctgtgcaaaaaataggtgtatattagtggattaaaatgagggta 19229330  T
Q  126 taacatgaagaaaa 139  Q
    ||| | ||||||||    
T  19229329 taataagaagaaaa 19229316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 34669102 - 34669309
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    ||||||| | |||||||| ||| | |||| ||| |||||||| | ||||||| ||| |||||||||||| | | | ||||||| |||||||||  ||||     
T  34669102 ttgttggtgtaaaagataataattgacaactgtctgttacaaaagaaagatatcatattaaatttattgaaaaaataaagtgtctgcaaaaaagtagaaa 34669201  T
Q  101 att-ttggtagattaaaatgatggtataacatgaagaaaa-tgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaag 198  Q
     || ||| | |||||||||||  |||||| |  || |||| |||||||||||| || ||| | |||| |||||||| ||| ||||  |||||||||||||    
T  34669202 tttattgatggattaaaatgagagtataatagaaaaaaaaatgtgcaaaaatacacatcgctattttaatgttaattttccaaaaaaacacttaaaaaag 34669301  T
Q  199 aacagatg 206  Q
    ||| ||||    
T  34669302 aacggatg 34669309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 34824253 - 34824324
Alignment:
Q  133 aagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacaga 204  Q
    ||||||||||||||||||| |||||  |  |||| ||| ||||||||||||||||||||||||| |||||||    
T  34824253 aagaaaatgtgcaaaaatacacttcactaatttggtgtgaatattctaaaacgacacttaaaaaggaacaga 34824324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 200
Target Start/End: Original strand, 5494071 - 5494244
Alignment:
Q  26 acaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggta 125  Q
    |||| |||||||||| ||| ||||||||||| ||||||||||| || ||| |||||||| | |||||| | |||  | ||||| || | |||||| | ||    
T  5494071 acaattgtttgttacgagaaaaagataacatattaaatttattataaagataaagtgtgagaaaaaaaaaggaatttattggtggagt-aaatgaggata 5494169  T
Q  126 taacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaa 200  Q
    ||| | |||||||||||||||||||| || ||  | ||||  | ||||| |||||||| |||||||  |||||||    
T  5494170 taataggaagaaaatgtgcaaaaatacacatcactatttttgtattaattttctaaaaagacactttgaaaagaa 5494244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 201
Target Start/End: Complemental strand, 7259445 - 7259295
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacatt-ttggtagattaaaatgatggtataacatgaagaaaa-tgtgcaaaaat 150  Q
    |||| |||| ||||||| | ||| |||||| ||||||||||  | || ||| || || ||||||||||| ||||||| | ||| |||| |||||||||||    
T  7259445 acatattaattttattggaaagataaagtgggtgcaaaaaaataaaaaattattagtggattaaaatgagggtataataggaaaaaaagtgtgcaaaaat 7259346  T
Q  151 atacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    | |||| | | ||||  |||||| |||||||||||||||||||||| ||||    
T  7259345 acactttgctatttttgtgttaaaattctaaaacgacacttaaaaaggaac 7259295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 633210 - 633035
Alignment:
Q  20 taactaacaaatgtttgttacaagataaagataacatgttaaatttatt-gtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaat 118  Q
    ||||||| || | ||| |||| ||| ||||||||||| ||||||||||| | | ||| |||||||||| ||||| ||||||  | ||||| |||||||||    
T  633210 taactaaaaattatttattacgagagaaagataacatattaaatttattagaaaaga-aaagtgtgtgaaaaaagtaagaatttattggtggattaaaat 633112  T
Q  119 gatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    ||  ||||||    ||||||||||| ||||||| ||||  ||  ||||||| ||||||||  ||||||||||||||||    
T  633111 gagagtataattgaaagaaaatgtggaaaaatacactttattaatttgatgctaatattc-caaacgacacttaaaaa 633035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 12568925 - 12569016
Alignment:
Q  122 ggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacagatggaataat 213  Q
    ||||||| | |||||||||||||||||||| |||||  | ||||| ||||||||||| || |  ||||||||||||||| ||| ||| ||||    
T  12568925 ggtataataagaagaaaatgtgcaaaaatacacttcactattttggtgttaatattccaacagaacacttaaaaaagaatagagggagtaat 12569016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 13545389 - 13545480
Alignment:
Q  122 ggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacagatggaataat 213  Q
    ||||||| | |||||||||||||||||||| |||||  | ||||| ||||||||||| || |  ||||||||||||||| ||| ||| ||||    
T  13545389 ggtataataagaagaaaatgtgcaaaaatacacttcactattttggtgttaatattccaacagaacacttaaaaaagaatagagggagtaat 13545480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 181
Target Start/End: Complemental strand, 34823743 - 34823612
Alignment:
Q  50 ataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaa 149  Q
    ||||||| || ||||||||| | | ||| |||||| | |||||||||||| || | ||| |||||||| || ||||| | | ||||||||| | ||||||    
T  34823743 ataacatattgaatttattggaaaaagatagtgtgcgaaaaaaataagaatatatcggtggattaaaacgagggtatgataggaagaaaatatacaaaaa 34823644  T
Q  150 tatacttcgttgttttgatgttaatattctaa 181  Q
    || |||||| |  |||| ||||||||||||||    
T  34823643 tacacttcgctaatttggtgttaatattctaa 34823612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 12568817 - 12568871
Alignment:
Q  14 agatattaactaacaaatgtttgttacaagataaagataacatgttaaatttatt 68  Q
    ||||| ||||||||||||||||||||| ||||||| |||| || |||||||||||    
T  12568817 agatagtaactaacaaatgtttgttacgagataaatataatatattaaatttatt 12568871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 13545281 - 13545335
Alignment:
Q  14 agatattaactaacaaatgtttgttacaagataaagataacatgttaaatttatt 68  Q
    ||||| ||||||||||||||||||||| ||||||| |||| || |||||||||||    
T  13545281 agatagtaactaacaaatgtttgttacgagataaatataatatattaaatttatt 13545335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 22722342 - 22722248
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaata 95  Q
    |||||| ||||||||| | |||||||||| |||  ||||  ||| || |||||||  |||||||||||| | ||| |||||||||||||||||||    
T  22722342 ttgttgaagaaaaagagagtaactaacaattgtaagttatgagagaatgataacacattaaatttattggaaagaaaaagtgtgtgcaaaaaata 22722248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 388991 - 388938
Alignment:
Q  15 gatattaactaacaaatgtttgttacaagataaagataacatgttaaatttatt 68  Q
    |||| |||||||||| |||||||||||||| |||||||||| || |||||||||    
T  388991 gatagtaactaacaattgtttgttacaagagaaagataacacgtcaaatttatt 388938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 37030517 - 37030368
Alignment:
Q  50 ataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacatt-ttggtagattaaaatgatggtataacatgaagaaaatgtgca-aa 147  Q
    ||||||| |||||||||||| | ||| ||||||| ||||||| |   |||  || || || ||||||||||| ||||||  | |||||||||||||| ||    
T  37030517 ataacatattaaatttattggaaagataaagtgtttgcaaaacaattgaaatttattagtggattaaaatgagggtatactaggaagaaaatgtgcaaaa 37030418  T
Q  148 aatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaa 197  Q
    |||| |||||||  ||||  ||||||| ||||||||  ||||||||||||    
T  37030417 aatacacttcgtgatttttgtgttaattttctaaaaaaacacttaaaaaa 37030368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 1272671 - 1272739
Alignment:
Q  25 aacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa 93  Q
    |||||||||||||||| ||  ||| ||||||| |||||||||||| | |||||  ||||||||||||||    
T  1272671 aacaaatgtttgttaccagcgaaaaataacatattaaatttattggaaagagagggtgtgtgcaaaaaa 1272739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 19578492 - 19578535
Alignment:
Q  26 acaaatgtttgttacaagataaagataacatgttaaatttattg 69  Q
    ||||||||||||||||||| ||||||||||| || |||||||||    
T  19578492 acaaatgtttgttacaagagaaagataacatattgaatttattg 19578535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 38750674 - 38750635
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttac 40  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  38750674 ttgttggagaaaaagatagtaagtaacaaatgtttgttac 38750635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 45759248 - 45759109
Alignment:
Q  10 aaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacatt-ttggt 108  Q
    ||||||||| ||||  |||| |||| || |||||| ||||||||||| |||||||||| | | | | |||||||||| ||||||  || |  || |||||    
T  45759248 aaaaagataataaccgacaattgttcgtcacaagagaaagataacatattaaatttatggaaaaaataaagtgtgtgtaaaaaaatagtaatttattggt 45759149  T
Q  109 agattaaaatgatggtataacatgaagaaaatgtgcaaaa 148  Q
     ||||||| ||| ||||||| | ||||||||||| |||||    
T  45759148 ggattaaattgagggtataataggaagaaaatgtacaaaa 45759109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 19578963 - 19579001
Alignment:
Q  163 tttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  19578963 tttggtgttaatattctaaaacgacacttaaaaaggaac 19579001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6512166 - 6512106
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaa 62  Q
    ||||||||||| | |||| ||||||| || |||||||||||||| ||||||||||| |||||    
T  6512166 ttgttggagaaga-gatactaactaaaaattgtttgttacaagagaaagataacatattaaa 6512106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7259483 - 7259443
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttaca 41  Q
    |||||||||||| ||||| |||||||||| |||||||||||    
T  7259483 ttgttggagaaagagatagtaactaacaattgtttgttaca 7259443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 45666732 - 45666922
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa-taagaa 99  Q
    ||||||||||||||||||  ||||||||| |||||||||||||| |  ||||||||||||| ||||||| | ||| ||||||||||||||||| || |||    
T  45666732 ttgttggagaaaaagataacaactaacaattgtttgttacaagaga--gataacatgttaattttattgaaaagataaagtgtgtgcaaaaaaataggaa 45666829  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacactta 192  Q
      | ||||| ||||||||||| ||||||| | |||||||||||||||||||| || ||| | ||||| ||| ||| || ||||| ||||||||    
T  45666830 tttattggtggattaaaatgagggtataataggaagaaaatgtgcaaaaatacacatcgctattttggtgtgaattttttaaaaagacactta 45666922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 9808043 - 9808254
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    |||||||||||||||||| ||||| | || |||||||||| ||| ||||||||||| |||||||||||  | ||| ||||||||||||||||||| |||     
T  9808043 ttgttggagaaaaagataataactgataattgtttgttacgagagaaagataacatattaaatttattagaaagataaagtgtgtgcaaaaaataggaat 9808142  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaa 200  Q
     | || || ||||||||||| | ||||| | |||||||||||| ||||||| || ||| | ||||| ||||||| |||||||| |||| ||||||| |||    
T  9808143 ttattagtggattaaaatgaggatataataggaagaaaatgtg-aaaaatacacatcgctattttggtgttaattttctaaaa-gacatttaaaaaggaa 9808240  T
Q  201 cagatggaataatt 214  Q
    | || ||| |||||    
T  9808241 cggagggagtaatt 9808254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 38840092 - 38839921
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    ||||| |||||||||||| ||||| |||  |||||||||||||| |||||||| || |||||||||||| | ||| || ||||||||||||||||  ||     
T  38840092 ttgtttgagaaaaagataataactgacatttgtttgttacaagaaaaagataatatattaaatttattggaaagataaggtgtgtgcaaaaaatagaaat 38839993  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaa 173  Q
     | ||||| ||||||||| | ||||||| |  |||||||||||||||||||||| ||| ||||||| ||||||    
T  38839992 ttattggtggattaaaatta-ggtataatagaaagaaaatgtgcaaaaatatacatcgctgttttggtgttaa 38839921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 17330842 - 17331042
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    ||||||||| |||||||| |||| ||||| |||||||| | ||| ||| |||| || |||||||||||| | ||| |||||||||| |||||||| |||     
T  17330842 ttgttggaggaaaagataataacaaacaattgtttgtttcgagagaaaaataatatattaaatttattggaaagataaagtgtgtgaaaaaaataggaat 17330941  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaa 200  Q
     | ||| |  |||||||| | ||||||| | |||||||||||||||||||| || | | | ||||| ||||||| |||||||| ||||||| |||| |||    
T  17330942 ttattgatgcattaaaattagggtataataggaagaaaatgtgcaaaaatacacattgctattttggtgttaattttctaaaaagacacttcaaaaggaa 17331041  T
Q  201 c 201  Q
    |    
T  17331042 c 17331042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 34031665 - 34031469
Alignment:
Q  3 gttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataa----ga 98  Q
    |||||| |||||||||||| ||||||| |||||||||| ||| ||||||||||||||||||||  || | ||| ||||||||||||||||| ||    ||    
T  34031665 gttggataaaaagatattatctaacaattgtttgttacgaga-aaagataacatgttaaatttcctgaaaagataaagtgtgtgcaaaaaaaaaaattga 34031567  T
Q  99 acattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattct-aaaacgacacttaaaa 195  Q
    |  | ||||| ||||||||||| ||||||| | |||||||||||||||||||| || ||  | ||||| | ||||| |||| |||| |||||||||||    
T  34031566 atttattggtggattaaaatgagggtataataggaagaaaatgtgcaaaaatacacatcactattttggtcttaattttctaaaaaagacacttaaaa 34031469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 50721378 - 50721554
Alignment:
Q  20 taactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatg 119  Q
    |||||||||| |||||||||| ||| ||||||||||| ||||||||| || | ||| |||||||||||||||| ||| ||  | |||||||||| ||||     
T  50721378 taactaacaattgtttgttacgagagaaagataacatattaaatttagtggaaagataaagtgtgtgcaaaaactaaaaatttattggtagattgaaata 50721477  T
Q  120 atggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    | ||||||| | ||||||||||| ||||||||||| | | | ||||| ||||||| || |||||  | |||||||||    
T  50721478 agggtataataggaagaaaatgtacaaaaatatacattgctattttggtgttaattttttaaaataatacttaaaaa 50721554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 53 - 215
Target Start/End: Complemental strand, 38433985 - 38433823
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatat 152  Q
    |||| |||||||||||| | ||| ||||||||||||||||||| |||  | || || ||||||||||| ||||||| | ||| ||| | |||||||||||    
T  38433985 acatattaaatttattggaaagataaagtgtgtgcaaaaaataggaaattattagtggattaaaatgagggtataataggaaaaaagtttgcaaaaatat 38433886  T
Q  153 acttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacagatggaataatta 215  Q
    |||||| | ||||  |||||| ||| |||||||||||||||||| ||||  ||||| ||||||    
T  38433885 acttcgctatttttgtgttaaaattttaaaacgacacttaaaaaggaacgaatggagtaatta 38433823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 53370234 - 53370054
Alignment:
Q  14 agatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagatt 113  Q
    ||||| |||||||||||||||| |||| ||| ||| ||||||| |||||||||||| | ||||||| | ||||| |||  || ||| || ||||| ||||    
T  53370234 agatagtaactaacaaatgtttattacgagagaaatataacatattaaatttattgaaaagagaaaatttgtgc-aaatttatgaatatattggttgatt 53370136  T
Q  114 aaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaa 195  Q
    | ||||||||||||| | ||| |||| ||||||||||| ||||  || ||||  ||||||||||| ||||||||| ||||||    
T  53370135 agaatgatggtataataggaataaaaggtgcaaaaatacactttattatttttgtgttaatattcaaaaacgacatttaaaa 53370054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 54982353 - 54982156
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaata-agaa 99  Q
    |||||||||||||||||| ||||| | || ||||||||||  || ||| ||||| | || ||||||||| | ||| ||||| ||||||||||| | ||||    
T  54982353 ttgttggagaaaaagataataactgataattgtttgttacgtgagaaatataacttattgaatttattggaaagataaagtatgtgcaaaaaaaatagaa 54982254  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaa 197  Q
      || | || ||||||||||| || |||| |  ||||||| ||||||||||| || ||  | ||||||||||||| |||||||| |||||||||||||    
T  54982253 atttattgtggattaaaatgagggcataatagaaagaaaacgtgcaaaaatacacatcactattttgatgttaattttctaaaaagacacttaaaaaa 54982156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 19443139 - 19443042
Alignment:
Q  104 ttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    ||||| ||||||||||| ||||||| | ||||||||||||||||||||||| ||||| | ||| | ||||| |||||||| |||||||||||| ||||    
T  19443139 ttggtggattaaaatgagggtataataggaagaaaatgtgcaaaaatatacatcgttatcttggtattaattttctaaaaagacacttaaaaaggaac 19443042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 49263491 - 49263690
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaa--atgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataa-- 96  Q
    |||||||||||||||||| || |||||||  || |||||||| ||| ||| |||||||  ||||||||||| | ||| ||| ||||||  ||||| ||      
T  49263491 ttgttggagaaaaagataatagctaacaattatatttgttacgagagaaaaataacat--taaatttattggaaagataaaatgtgtgagaaaaaaaaaa 49263588  T
Q  97 -gaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaa 195  Q
     |||  | || || ||||||||| | ||| ||| | |||||||||||||||||||| |||||| | ||||| ||||||| |||||||| |||||||||||    
T  49263589 ggaatttattagtggattaaaatcagggtctaataggaagaaaatgtgcaaaaatacacttcgctattttggtgttaattttctaaaaagacacttaaaa 49263688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 156
Target Start/End: Original strand, 2685076 - 2685200
Alignment:
Q  33 tttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgt-gcaaaaaataagaacattttggtagattaaaatgatggtataacat 131  Q
    ||||||| |||| |||||||||| ||||||||||||| | ||||||||||| | ||||||||||| ||  | ||||| | ||||||||| | ||||| |     
T  2685076 tttgttataagagaaagataacacgttaaatttattgaaaagagaaagtgtatcgcaaaaaataaaaatttattggtggtttaaaatgaagatataataa 2685175  T
Q  132 gaagaaaatgtgcaaaaatatactt 156  Q
    |||||||||||||||||||| ||||    
T  2685176 gaagaaaatgtgcaaaaatacactt 2685200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 24073505 - 24073335
Alignment:
Q  26 acaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaa-aaataagaacattttggtagattaaaatgatggt 124  Q
    |||| |||||||||| ||| ||| ||||||| |||||||||||| | ||| |||||||||||||| |||||  ||  | ||||| |||||||| ||  ||    
T  24073505 acaattgtttgttacgagagaaatataacatattaaatttattgaaaagataaagtgtgtgcaaagaaatagaaatttattggtggattaaaacgagagt 24073406  T
Q  125 ataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaa 195  Q
    |||  | |||||||||||||||||||| |||| | | ||||| ||||||| |||||| | ||| |||||||    
T  24073405 atattaggaagaaaatgtgcaaaaatacactttgctattttggtgttaattttctaagaagacgcttaaaa 24073335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 192
Target Start/End: Complemental strand, 47944111 - 47943965
Alignment:
Q  42 agataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataacatgaagaaaatg 141  Q
    ||||||| ||||||| |||||||||||  | ||| ||||||||||    ||||| |||  | ||||| ||||||||||| ||||||| | ||||||||||    
T  47944111 agataaacataacatattaaatttattagaaagataaagtgtgtg----aaataggaatttattggtggattaaaatgagggtataataggaagaaaatg 47944016  T
Q  142 tgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacactta 192  Q
    |||||||||| || ||| | ||||| ||||||| || ||||| ||||||||    
T  47944015 tgcaaaaatacacatcgctattttggtgttaattttttaaaaagacactta 47943965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 196
Target Start/End: Original strand, 55344059 - 55344204
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgcaaaaa-ataagaacattttggtagattaaaatgatggtataacatgaagaaaa-tgtgcaaaaat 150  Q
    |||| |||||||||||  | ||| |||||||||||||||| ||| |||  | || || ||||||||||| ||||||| ||||| |||| |||||||||||    
T  55344059 acatattaaatttattagacagataaagtgtgtgcaaaaatataggaaattattagtggattaaaatgagggtataatatgaaaaaaaatgtgcaaaaat 55344158  T
Q  151 atacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    | | |||| | ||||  |||||| ||||||||||||||||||||||    
T  55344159 acatttcgctatttttgtgttaaaattctaaaacgacacttaaaaa 55344204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 201
Target Start/End: Complemental strand, 9088865 - 9088741
Alignment:
Q  78 aagtgtgtgcaaaaaataa-gaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatat 176  Q
    |||||||||||||||| || |||  ||||||| ||||||||||| ||||||| | ||||||||||||||| |||| || ||| | ||||  ||||||| |    
T  9088865 aagtgtgtgcaaaaaaaaaagaattttttggtggattaaaatgagggtataataggaagaaaatgtgcaagaatacacatcgctattttagtgttaatgt 9088766  T
Q  177 tctaaaacgacacttaaaaaagaac 201  Q
    ||||||| || ||||||||| ||||    
T  9088765 tctaaaaagatacttaaaaaggaac 9088741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 204
Target Start/End: Complemental strand, 24538047 - 24537897
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataacatgaagaaaa-tgtgcaaaaata 151  Q
    |||| |||||||||||| | ||| |||||||||| |||||||| |||  | || || ||||||| ||| | ||||| | ||| |||| ||||||||||||    
T  24538047 acatattaaatttattggaaagataaagtgtgtgaaaaaaataggaaattattagtggattaaa-tgaag-tataataggaaaaaaagtgtgcaaaaata 24537950  T
Q  152 tacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacaga 204  Q
     |||||| | |||| ||||||| |||||||||||||||||||||| |||||||    
T  24537949 cacttcgctatttttatgttaaaattctaaaacgacacttaaaaaggaacaga 24537897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 53393796 - 53393978
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaa-aataagaa 99  Q
    ||||||||||||| |||| ||||| |||| ||||| |||||||| ||| ||||||| ||||| |||||| | ||| ||||||||||||||| |||| |||    
T  53393796 ttgttggagaaaa-gataataactgacaattgtttattacaagaaaaatataacatattaaaattattgaatagataaagtgtgtgcaaaataataggaa 53393894  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcg-ttgttttgatgttaatattctaaaa 183  Q
      |   ||| ||||||||| |  ||| || |||||||||||||||||||||| || ||| | |||||| ||||||| ||||||||    
T  53393895 tttaaaggtggattaaaataagagtagaatatgaagaaaatgtgcaaaaatacacctcgctagttttg-tgttaattttctaaaa 53393978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 1821163 - 1821072
Alignment:
Q  105 tggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    |||| ||||||||||| ||||||| | |||||||||||||||||||| || ||| | ||||| ||||||| || ||||| ||||||||||||    
T  1821163 tggtggattaaaatgagggtataataggaagaaaatgtgcaaaaatacacatcgctattttggtgttaattttttaaaaagacacttaaaaa 1821072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 51 - 201
Target Start/End: Complemental strand, 37209691 - 37209540
Alignment:
Q  51 taacatgttaaatttattgtagagagaaagtgtgtgcaaaa-aataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaa 149  Q
    |||||| |||||||||||| | ||| ||||||||||||||| ||||||||  | ||||  ||||||||| |  |||| | | ||||||||||| ||||||    
T  37209691 taacatattaaatttattgaaaagataaagtgtgtgcaaaagaataagaatttattggcggattaaaataagagtatgataggaagaaaatgtacaaaaa 37209592  T
Q  150 tatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    || || ||| | ||||| || |||| |||||||| |||||||||||| ||||    
T  37209591 tacacatcgctattttggtggtaattttctaaaaagacacttaaaaaggaac 37209540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 195
Target Start/End: Complemental strand, 46430541 - 46430403
Alignment:
Q  58 ttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacatt-ttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatactt 156  Q
    |||||||||||| | ||| ||||||||||| |||||  ||||  || |||||||||||||||||  || ||| | ||||||||| | |||||||| || |    
T  46430541 ttaaatttattggaaagataaagtgtgtgctaaaaaatagaaatttattggtagattaaaatgagagtgtaataggaagaaaatattcaaaaatacacat 46430442  T
Q  157 cgttgttttgatgttaatattctaaaacgacacttaaaa 195  Q
    |||| ||||| ||||||| || ||||| |||||||||||    
T  46430441 cgttattttggtgttaattttttaaaaagacacttaaaa 46430403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 49299518 - 49299321
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgc-aaaaaataagaa 99  Q
    ||||| || ||||||||| ||||| |||| |||||||||| ||  ||||||||||| |||||||||||| | | | |||||| |||| ||||||||  ||    
T  49299518 ttgttagataaaaagataataactgacaattgtttgttacgagtgaaagataacatattaaatttattggaaaaataaagtgagtgcaaaaaaatagtaa 49299419  T
Q  100 cattttggtagattaaaatgatggtataa-catgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
      | ||| | ||||||||||| |||||||    ||| |||| ||||||||||| || ||| | ||||  ||||||| |||||||| ||||||||||||    
T  49299418 tttattgatggattaaaatgagggtataattgggaaaaaaaagtgcaaaaatacacatcgctatttttgtgttaattttctaaaaagacacttaaaaa 49299321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30912830 - 30912884
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataaca 55  Q
    |||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||||    
T  30912830 ttgttggagaaaaagatagtaactaacaaatgtttgttacgagagaaaaataaca 30912884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 46250279 - 46250395
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    |||||||||||||||||| ||  |||||| ||||| |||| | | |||||||| ||  | ||||||||| | |||||||||||||| |||||||| |||     
T  46250279 ttgttggagaaaaagatagtat-taacaattgtttcttacgaaaaaaagataatatactcaatttattggaaagagaaagtgtgtgaaaaaaatatgaat 46250377  T
Q  101 attttggtagattaaaat 118  Q
    || ||||| |||||||||    
T  46250378 atattggtggattaaaat 46250395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 22349374 - 22349491
Alignment:
Q  9 gaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggt 108  Q
    |||| ||||| |||||||||| ||||| |||| ||| ||||||||||| || ||||||||| | ||||||| |||||| || |||||  || || |||||    
T  22349374 gaaatagatagtaactaacaattgttt-ttacgagagaaagataacatatttaatttattgaaaagagaaaatgtgtg-aacaaatagaaatatattggt 22349471  T
Q  109 agattaaaatgatggtataa 128  Q
    |||||||||| | |||||||    
T  22349472 agattaaaataagggtataa 22349491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 201
Target Start/End: Complemental strand, 26625744 - 26625584
Alignment:
Q  38 tacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgc-aaaaaataagaacattttggtagattaaaatgatggtataacatgaaga 136  Q
    ||||||| ||||||||||| |||||||||||| | ||||||||| ||| | |||||||||||| || ||    ||||||||| | ||||||| | ||||     
T  26625744 tacaagagaaagataacatattaaatttattggaaagagaaagtatgtacaaaaaaataagaatatatt----gattaaaataaaggtataataggaagt 26625649  T
Q  137 aaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    ||  ||||||||||| |||||| |   ||| ||||||||||  |||| ||| |||||||| ||||    
T  26625648 aagagtgcaaaaatacacttcgataacttggtgttaatatttcaaaatgacccttaaaaaggaac 26625584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 33809357 - 33809412
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacat 56  Q
    |||||||||||||||||| |||||||||| |||||||||| | ||||| |||||||    
T  33809357 ttgttggagaaaaagataataactaacaattgtttgttacgatataaaaataacat 33809412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 41503034 - 41503141
Alignment:
Q  50 ataacatgttaaatttattgtagagagaaagtgtgtgcaaaaa-ataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaa 148  Q
    ||||||| |||||||||||  | ||| ||||||||||| |||| |||  || || ||||| ||||||| ||| ||||||| | |||||||||||||||||    
T  41503034 ataacatattaaatttattagaaagataaagtgtgtgccaaaatatataaatatattggtggattaaattgagggtataataggaagaaaatgtgcaaaa 41503133  T
Q  149 atatactt 156  Q
    ||| ||||    
T  41503134 atacactt 41503141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 208
Target Start/End: Complemental strand, 37371163 - 37371009
Alignment:
Q  58 ttaaatttattgtagagagaaagtgtgtgcaaaaaataa-gaacatt-ttggtagattaaaatgatggtataacatgaagaaaatgtg--caaaaatata 153  Q
    |||||||||||| | ||| ||||||||||||||||| || | | ||| || || ||||||| ||| ||||||| |  || |||| |||  |||||||| |    
T  37371163 ttaaatttattgaaaagataaagtgtgtgcaaaaaaaaaagtaaattattagtggattaaattgagggtataatagaaaaaaaaagtgttcaaaaataca 37371064  T
Q  154 cttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacagatgga 208  Q
    ||||  | ||||  |||||| |||||||||||||||||||||| |||| ||||||    
T  37371063 cttcactatttttgtgttaaaattctaaaacgacacttaaaaaggaacggatgga 37371009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 41502961 - 41503000
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttac 40  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  41502961 ttgttggagaaaaagatagtaagtaacaaatgtttgttac 41503000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 6949563 - 6949641
Alignment:
Q  123 gtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    |||||| | ||||||||||| |||||||| || |||||  |||| ||||||| ||||||||  ||||||||||| ||||    
T  6949563 gtataataggaagaaaatgtacaaaaatacacatcgttaatttggtgttaattttctaaaaatacacttaaaaaggaac 6949641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 8077832 - 8077782
Alignment:
Q  167 atgttaatattctaaaacgacacttaaaaaagaacagatggaataattaat 217  Q
    ||||||| |||||||||||||||||||||| |||  |||||| ||||||||    
T  8077832 atgttaaaattctaaaacgacacttaaaaaggaatggatggagtaattaat 8077782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 25494223 - 25494306
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtg 86  Q
    |||||||||||||||||| ||| | |||| |||||||||  |||| |||||||||  |||||||||||| | | | ||||||||||    
T  25494223 ttgttggagaaaaagataataaatgacaattgtttgttatgagatgaagataaca--ttaaatttattgaaaatataaagtgtgtg 25494306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 46016505 - 46016448
Alignment:
Q  61 aatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaat 118  Q
    ||||||||| | |||||||||||||| |||||||| ||| || ||||| |||||||||    
T  46016505 aatttattggaaagagaaagtgtgtgaaaaaaatatgaatatattggtggattaaaat 46016448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 38044339 - 38044247
Alignment:
Q  104 ttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    ||||| |||||||||||  ||| || | |||||||||||||||||||| || | | | |||| |||||||| || |||||  |||||||||||    
T  38044339 ttggttgattaaaatgaaagtacaataagaagaaaatgtgcaaaaatacacattgctatttttatgttaattttttaaaaaaacacttaaaaa 38044247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 6428522 - 6428709
Alignment:
Q  13 aagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa-taagaacattttggtaga 111  Q
    |||||| |||||| ||| |||||||||| ||| ||||||||||| |||||||||||| | ||| ||||||||||||||||| || |||| | ||||| ||    
T  6428522 aagataataacta-caattgtttgttacgagagaaagataacatattaaatttattggaaagataaagtgtgtgcaaaaaaataggaacttattggtgga 6428620  T
Q  112 ttaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaa 200  Q
    ||||||||| ||||||| |  ||||||||||||||||||| || ||  | ||||| ||||||| |||| ||| ||||||||||||||||    
T  6428621 ttaaaatgaaggtataatagaaagaaaatgtgcaaaaatacacatcactattttggtgttaattttcttaaaagacacttaaaaaagaa 6428709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 8544325 - 8544125
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaat-aagaa 99  Q
    |||||||||||||||||| ||| | |||| ||||| |||| ||| ||||||||||| |||||||||||| | | | || ||||||||||||||| | |||    
T  8544325 ttgttggagaaaaagataataattgacaattgtttcttacgagagaaagataacatattaaatttattggaaatataaggtgtgtgcaaaaaatcaggaa 8544226  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaaga 199  Q
      | ||||| ||||||||||| ||||||| |||||||||||||||||||||| || | |||  |||| ||||||| || | ||| | |||||||||||||    
T  8544225 tttattggtggattaaaatgagggtataatatgaagaaaatgtgcaaaaatacacattgttaatttggtgttaattttttgaaaaggcacttaaaaaaga 8544126  T
Q  200 a 200  Q
    |    
T  8544125 a 8544125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 17202074 - 17201878
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa-taagaa 99  Q
    ||||||||||| |||||  ||||| ||||  ||||||||| ||| ||| ||||||| |||||||||||| | ||| ||||| |||| |||||| || |||    
T  17202074 ttgttggagaataagatcataactgacaatcgtttgttacgagagaaaaataacatattaaatttattggaaagataaagtttgtgtaaaaaaataggaa 17201975  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
      | ||||| ||||||||||| ||||||| | |||||||||||||||||||| || ||| | |||| |||||||| |||||||| ||||||||||||    
T  17201974 tttattggtggattaaaatgagggtataataggaagaaaatgtgcaaaaatacacatcgctatttttatgttaattttctaaaaagacacttaaaaa 17201878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 12436331 - 12436151
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    |||||| ||||||||||| ||||  ||||  ||||||||| ||| ||||||||||| |||||| ||||| | | | |||||||||  |||||||| |||     
T  12436331 ttgttgaagaaaaagataataaccgacaatagtttgttaccagagaaagataacatattaaatatattgaaaaaataaagtgtgttaaaaaaatatgaat 12436232  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaa 181  Q
     | ||||| |||||||||||  |||||| |||||||||||||||||||||| || || || ||||| ||||||| ||||||    
T  12436231 ttattggtggattaaaatgagtgtataatatgaagaaaatgtgcaaaaatacacatcattattttggtgttaattttctaa 12436151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 11991866 - 11991725
Alignment:
Q  11 aaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataa-gaacattttggta 109  Q
    |||||||| || || |||| |||||||||||||| ||||||||||| |||||||||||  | | | ||||| |||||||||||  | |||  ||||||||    
T  11991866 aaaagataatatctgacaattgtttgttacaagagaaagataacatattaaatttattagaaatataaagtttgtgcaaaaaaacatgaattttttggta 11991767  T
Q  110 gattaaaatgatggtataacatgaagaaaatgtgcaaaaata 151  Q
    ||||||||||| ||||||  | ||||||||||||||||||||    
T  11991766 gattaaaatgaaggtatattaggaagaaaatgtgcaaaaata 11991725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 19804184 - 19804380
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgc-aaaaaataagaa 99  Q
    |||||||||||||||||| || || |||| | |||||||| ||| ||| ||||||| |||||||| ||| | ||| ||||||||| | ||||||||||||    
T  19804184 ttgttggagaaaaagataatagctgacaattatttgttaccagagaaatataacatattaaatttgttggaaagataaagtgtgtacaaaaaaataagaa 19804283  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
      | || || ||||||||||| |||| || | ||||||||||| |||||||| || | | |  |||  ||||||| |||||||| ||||||||||||    
T  19804284 tttatttgtcgattaaaatgagggtagaataggaagaaaatgtacaaaaatacacattgctaatttagtgttaattttctaaaaagacacttaaaaa 19804380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 32474597 - 32474791
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgc-aaaaaataagaa 99  Q
    |||||| ||||||||||| ||||| |||| ||||| |||| | | ||||||||||| |||||||||||| | ||| ||||||| ||| |||||||| |||    
T  32474597 ttgttgaagaaaaagataataactgacaattgtttattacgata-aaagataacatattaaatttattggaaagataaagtgtttgcgaaaaaatatgaa 32474695  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaa 195  Q
      | ||| | ||||||||||| ||||||| |  ||||||||||||||||||| |  ||| | |||||||| |||| |||| ||| || ||||||||    
T  32474696 tttattgttggattaaaatgagggtataatagaaagaaaatgtgcaaaaatacaaatcgctattttgatggtaattttcttaaaagatacttaaaa 32474791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 214
Target Start/End: Original strand, 28620497 - 28620683
Alignment:
Q  26 acaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgc-aaaaaataagaacattttggtagattaaaatgatggt 124  Q
    |||| |||||||||| ||| ||| ||||| | |||||||||||| | ||| || |||||||| |||||||| |||| || |||  ||||||||||| |||    
T  28620497 acaattgtttgttacgagagaaatataacttattaaatttattgaaaagataaggtgtgtgcaaaaaaataggaac-ttatggcggattaaaatgagggt 28620595  T
Q  125 ataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacagatggaataatt 214  Q
    |||| | |||||||| ||||||||||| || ||||| |||   ||||||| |||||||| |||||||||||| |||| || ||| |||||    
T  28620596 ataataggaagaaaaggtgcaaaaatacacatcgttattt--gtgttaattttctaaaaagacacttaaaaaggaacggagggagtaatt 28620683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 194
Target Start/End: Complemental strand, 36059695 - 36059554
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatat 152  Q
    |||| |||||||||||| | ||| ||||||||||||||||||| |||  | || || ||||||||||| ||||||| | ||| |||||||| |||||||     
T  36059695 acatattaaatttattggaaagataaagtgtgtgcaaaaaataggaaattattagtggattaaaatgagggtataataggaaaaaaatgtgaaaaaatac 36059596  T
Q  153 acttcgttgttttgatgttaatattctaaaacgacacttaaa 194  Q
    |||||  | ||||  |||||| |||||||| |||||||||||    
T  36059595 acttcactatttttgtgttaaaattctaaatcgacacttaaa 36059554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 39585439 - 39585348
Alignment:
Q  110 gattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    ||||||||||| ||||||| | |||||||||||||||||||| || ||| | ||||| ||||||| |||||||| |||||||||||| ||||    
T  39585439 gattaaaatgagggtataataggaagaaaatgtgcaaaaatacacgtcgctattttggtgttaattttctaaaaagacacttaaaaaggaac 39585348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 20202161 - 20202310
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgcaaaaaa-taagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaata 151  Q
    |||| |||||||||||| | ||| ||||||||||||||||| || |||  | || ||  |||||||||| ||||||| | ||| ||||||||||||||||    
T  20202161 acatattaaatttattgaaaagataaagtgtgtgcaaaaaaatatgaaattattagtgaattaaaatgagggtataataggaaaaaaatgtgcaaaaata 20202260  T
Q  152 tacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
     |||| | | ||||  |||||| ||| |||||||||||||||||| ||||    
T  20202261 cacttagctatttttgtgttaaaattttaaaacgacacttaaaaaggaac 20202310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 39940316 - 39940167
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    ||||||||||||||| || ||||  ||||  ||||||||  ||| ||| |||| || |||||||||||| | |||  ||||||||| |||||||| |||     
T  39940316 ttgttggagaaaaagttaataacggacaatagtttgttatgagagaaaaataaaatattaaatttattggaaagatcaagtgtgtgaaaaaaataggaat 39940217  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaat 150  Q
     | ||||| ||||||||||| ||||||| | ||||||||||| |||||||    
T  39940216 ttattggtggattaaaatgagggtataataggaagaaaatgtacaaaaat 39940167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 42673666 - 42673513
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    ||||| |||||||||||| ||||  |||| | |||||||  ||| ||| ||||||| |||||||||||  |  || |||||||||||||||||||||||     
T  42673666 ttgttagagaaaaagataataaccgacaattatttgttatgagagaaatataacatattaaatttattagaatgataaagtgtgtgcaaaaaataagaat 42673567  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatac 154  Q
     | ||||| ||||||||  | ||||||||| | | | |||||||||||||||||    
T  42673566 ttattggtggattaaaacaagggtataacaaggatacaatgtgcaaaaatatac 42673513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 25612908 - 25612759
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    |||||||||||||||||| |||||| | | ||||| |||| ||| ||||||||||| ||||||||||| || |||  ||| |||||||||||| | |||     
T  25612908 ttgttggagaaaaagataataactagcgattgtttcttacgagagaaagataacatattaaatttattctaaagatgaagcgtgtgcaaaaaaaatgaat 25612809  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaata 151  Q
      | |  | |||| |||||| ||||||| | ||||||||||||||||||||    
T  25612808 tatctaatggatt-aaatgagggtataataggaagaaaatgtgcaaaaata 25612759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 197
Target Start/End: Original strand, 17558319 - 17558439
Alignment:
Q  77 aaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatat 176  Q
    ||||||||||||||||||| |||  | || || ||||||||||| | ||||| | ||| ||  |||| ||||||| |||||| | ||||  |||||| ||    
T  17558319 aaagtgtgtgcaaaaaataggaaattattagtggattaaaatgaggatataataggaaaaatgtgtgtaaaaatacacttcgctatttttgtgttaaaat 17558418  T
Q  177 tctaaaacgacacttaaaaaa 197  Q
    |||||||||||||||||||||    
T  17558419 tctaaaacgacacttaaaaaa 17558439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 196
Target Start/End: Original strand, 1584181 - 1584320
Alignment:
Q  58 ttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacatttt-ggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatactt 156  Q
    |||||||||||| | ||| |||||||||||| ||||  ||||  || | ||| ||||||||||| ||||||| |  ||||||||||||||||||| || |    
T  1584181 ttaaatttattggaaagataaagtgtgtgcagaaaaatagaaatttatcggtggattaaaatgagggtataatagaaagaaaatgtgcaaaaatacacat 1584280  T
Q  157 cgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    || |  |||| ||||||| || ||||| ||||||||||||    
T  1584281 cgctaatttggtgttaattttttaaaaagacacttaaaaa 1584320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 37270025 - 37270196
Alignment:
Q  25 aacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggt 124  Q
    |||| ||||||||||  ||| ||| ||||||| |||||||||||  |  || |||||||| ||||||||||   | || || || ||||||| ||| |||    
T  37270025 aacatatgtttgttatgagaaaaatataacatattaaatttattagaatgataaagtgtgagcaaaaaatatagatatattagtggattaaattgagggt 37270124  T
Q  125 ataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    |||  | |||||||||||||||||||| |||| | | ||||  ||  ||| |||||||||||||||||||||    
T  37270125 atagtaggaagaaaatgtgcaaaaatacactttgctatttttgtggaaattttctaaaacgacacttaaaaa 37270196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 196
Target Start/End: Complemental strand, 249057 - 248896
Alignment:
Q  34 ttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataacatga 133  Q
    ||||||| ||| ||| ||||||| |||||||| ||| | ||| ||||||||  |||||||||   | || || || ||||||| ||| ||||||| | ||    
T  249057 ttgttacgagaaaaatataacatattaaattttttggaaagataaagtgtgc-caaaaaatagagatatgttagtggattaaattgagggtataatagga 248959  T
Q  134 agaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    |||||||||| ||||||| |||| | | |||| |||  ||| |||||||||||||||||||||    
T  248958 agaaaatgtgtaaaaatacactttgctatttttatggaaattttctaaaacgacacttaaaaa 248896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 17200493 - 17200577
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgt 85  Q
    |||||| | ||||||||| ||| ||||||||||||||||| | | ||||||||||| ||| |||||||  | |||||||||||||    
T  17200493 ttgttgcataaaaagatagtaattaacaaatgtttgttacgaaagaaagataacatattatatttattagaaagagaaagtgtgt 17200577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 1583938 - 1584138
Alignment:
Q  4 ttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa-taagaacat 102  Q
    ||||||||||||||| ||||  |||| |||||||||  ||| ||| | ||| | | |||||||||  | ||| ||||||||||||||||| || |||  |    
T  1583938 ttggagaaaaagataataacggacaattgtttgttatgagagaaatacaac-tatgaaatttattagaaagataaagtgtgtgcaaaaaaataggaattt 1584036  T
Q  103 tttggtagattaa---aatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaaga 199  Q
     ||||| ||||||   |||| |||||||| | |||||||||||||||||||| || ||| |  ||||||||| || || ||||| || |||||||| |||    
T  1584037 attggtggattaattaaatggtggtataataggaagaaaatgtgcaaaaatacacatcgctaatttgatgtttattttttaaaaagatacttaaaagaga 1584136  T
Q  200 ac 201  Q
    ||    
T  1584137 ac 1584138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 197
Target Start/End: Complemental strand, 11825336 - 11825178
Alignment:
Q  42 agataaagataacatgttaaatttattgtagagagaaagtgtgtgc-aaaaaataagaacattttggtagattaaaatgatggtataacatgaagaaaat 140  Q
    ||||||| ||||||| ||||||||||||   ||| ||||| ||||| |||||||||||| || || || ||||| | ||| ||||||| | ||||||||     
T  11825336 agataaaaataacatattaaatttattgagaagataaagtatgtgccaaaaaataagaatatatttgtggattacattgagggtataataggaagaaaaa 11825237  T
Q  141 g--tgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaa 197  Q
       ||| |||||| |||||| | ||||  | ||||| ||||||||||||||||||||||    
T  11825236 aaatgctaaaatacacttcgctatttttgtattaattttctaaaacgacacttaaaaaa 11825178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 32717689 - 32717587
Alignment:
Q  110 gattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaacagatggaa 209  Q
    |||||| |||| ||||||| | ||| ||| ||||||||| || |||||| | ||||  |||||| |||||||||||||||||||||| ||||||| || |    
T  32717689 gattaacatgagggtataataggaaaaaagtgtgcaaaa-tacacttcgctatttttgtgttaaaattctaaaacgacacttaaaaaggaacagagggga 32717591  T
Q  210 taat 213  Q
    ||||    
T  32717590 taat 32717587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 18412957 - 18412836
Alignment:
Q  8 agaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttatt-gtagagagaaagtgtgtgcaaaaaataagaacattttg 106  Q
    ||||||||||| ||||| |||| |||||||||| ||| |||||||| || |||||||||||   | | | ||||| |||||||||||||| ||  | |||    
T  18412957 agaaaaagataataactgacaattgtttgttacgagagaaagataatatattaaatttattaaaaaaaataaagtatgtgcaaaaaataaaaatttattg 18412858  T
Q  107 gtagattaaaatgatggtataa 128  Q
    || ||||||||| | |||||||    
T  18412857 gtggattaaaataaaggtataa 18412836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 196
Target Start/End: Original strand, 16366043 - 16366187
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgcaaaaa-ataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaata 151  Q
    |||| |||||||||||| | ||| |||||||| ||||||| ||| |||  | || | |||||||||||| ||||||| | ||| ||| | ||||||||||    
T  16366043 acatattaaatttattggaaagataaagtgtgcgcaaaaatatatgaaattattagaagattaaaatgagggtataataggaaaaaagtttgcaaaaata 16366142  T
Q  152 tacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
     |||||  | ||||  |||||| ||||| ||||||||||| ||||    
T  16366143 cacttcactatttttgtgttaaaattcttaaacgacacttcaaaa 16366187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 249111 - 249072
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttac 40  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  249111 ttgttggagaaaaagatactaagtaacaaatgtttgttac 249072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 19133172 - 19133127
Alignment:
Q  48 agataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa 93  Q
    ||||||||| |||||||||||| | || ||||||||||||||||||    
T  19133172 agataacatattaaatttattggaaagggaaagtgtgtgcaaaaaa 19133127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 23410956 - 23411109
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgc-aaaaaataagaa 99  Q
    |||||||||||||||||| ||||||| |||| |||||||| ||| ||||||||||| |||||||||||| | ||||||||||| ||| |||||||| |||    
T  23410956 ttgttggagaaaaagatagtaactaagaaatatttgttacgagagaaagataacatattaaatttattggaaagagaaagtgtatgcaaaaaaataggaa 23411055  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatata 153  Q
     || ||||| ||||||||||| ||||||| | ||  |||| |||||||||||||    
T  23411056 tatattggtggattaaaatgagggtataataggatcaaaaagtgcaaaaatata 23411109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 8049786 - 8049985
Alignment:
Q  5 tggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgc---aaaaaataagaaca 101  Q
    |||||||||||||| ||| |||||| |||||||||  ||| ||||||||||| |||||||||||| | | | |||||||||||   ||||||||||||      
T  8049786 tggagaaaaagataataagtaacaattgtttgttatgagagaaagataacatattaaatttattggaaatataaagtgtgtgcaaaaaaaaataagaatt 8049885  T
Q  102 ttttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    | ||||| ||| ||||||| ||||||| | |||||||||||||||||| | || ||| | ||||| ||||||| || ||||| ||||| |||||| ||||    
T  8049886 tattggtggatcaaaatgagggtataataggaagaaaatgtgcaaaaacacacatcgctattttggtgttaattttttaaaaagacacataaaaaggaac 8049985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 25056990 - 25057189
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    ||||| |||||||| ||| |||| | ||| |||||||||  ||| ||||||||||  |||||||||||| | ||| |||||||||||||||||||||||     
T  25056990 ttgttagagaaaaatataataacca-caactgtttgttatgagagaaagataacacattaaatttattggaaagataaagtgtgtgcaaaaaataagaat 25057088  T
Q  101 attttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaa 200  Q
     | ||| | ||||||| ||| ||||||| | |||||||||||  |||||||  | ||||| ||||||||||||| || ||||| |||||||||||| |||    
T  25057089 ttattgatggattaaattgaaggtataataggaagaaaatgtataaaaatacccatcgttattttgatgttaattttttaaaaagacacttaaaaatgaa 25057188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 14093406 - 14093194
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    |||||| ||||||||||| ||||  |||| |||||||||| ||| |||||| |||| |||||||||||| |  || |||||||||||||||||  ||||     
T  14093406 ttgttgtagaaaaagataataaccgacaattgtttgttacgagagaaagatgacatattaaatttattggaaggataaagtgtgtgcaaaaaaatagaag 14093307  T
Q  101 att-ttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaaga 199  Q
     || ||| | ||||||||||| ||||||| | |||||||||||||||||||| || | | |  |||| ||||||  |||||||| || |||||||||  |    
T  14093306 tttattgatggattaaaatgagggtataataggaagaaaatgtgcaaaaatacacattgctaatttggtgttaactttctaaaa-gatacttaaaaatta 14093208  T
Q  200 acagatggaataat 213  Q
    ||||||||| ||||    
T  14093207 acagatggagtaat 14093194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 2437421 - 2437273
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaa-aaaataagaa 99  Q
    |||||| ||||||||||| ||| | ||||  ||||||||  ||| | ||||||||| |||||||||||| | ||| ||||||||||||| |||||| |||    
T  2437421 ttgttgaagaaaaagataataattgacaatagtttgttatgagagatagataacatattaaatttattggaaagataaagtgtgtgcaaaaaaataggaa 2437322  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaa 148  Q
      | ||||| ||||||||||||||||||| | |||||||||||||||||    
T  2437321 tttattggtggattaaaatgatggtataataggaagaaaatgtgcaaaa 2437273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 6026522 - 6026664
Alignment:
Q  59 taaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcg 158  Q
    ||||||||||| | |||||||||||||| |||||||| ||| || || || |||||||||||  |||||| |  ||||||| ||||||| ||| |||| |    
T  6026522 taaatttattggaaagagaaagtgtgtgtaaaaaatatgaatatattcgtggattaaaatgagagtataatagaaagaaaaagtgcaaacatacactttg 6026621  T
Q  159 ttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
     | ||||  ||||||||||||||||||||||||||||| ||||    
T  6026622 ctatttttgtgttaatattctaaaacgacacttaaaaaggaac 6026664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 31660874 - 31661070
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaa-ataagaa 99  Q
    |||||| ||||||||| | |||||||| | |||||| ||  ||| ||||||||||  |||||||||||| | ||||||||||||| || ||| ||| |||    
T  31660874 ttgttgaagaaaaagagagtaactaacgattgtttgctatgagagaaagataacacattaaatttattggaaagagaaagtgtgtccagaaagataggaa 31660973  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
        ||||||||||||||||| ||||||| | ||||||||| ||  |||||| | ||| ||  |||| | ||| |||||||||||||||||||||||    
T  31660974 tcaattggtagattaaaatgaaggtataataggaagaaaatatgttaaaatacaattccttaatttggttttactattctaaaacgacacttaaaaa 31661070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 26252177 - 26252004
Alignment:
Q  28 aaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtg-caaaaaataagaacattttggtagattaaaatgatggtat 126  Q
    ||||||||||||| ||| ||| ||||||| |||||||||||  | ||| |||||||||| |||||||||   | || ||||| ||||||| ||| |||||    
T  26252177 aaatgtttgttacgagaaaaatataacatattaaatttattagaaagataaagtgtgtgccaaaaaatagagatatattggt-gattaaattgagggtat 26252079  T
Q  127 aacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    || | ||||||||||| |||||||| ||||   | |||| |||  ||| ||||||||||||||||||||| ||||    
T  26252078 aataggaagaaaatgtacaaaaatacactttactattttcatggaaattttctaaaacgacacttaaaaaggaac 26252004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 7972402 - 7972258
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacatt-ttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaata 151  Q
    |||| |||||||||||| | ||| ||| |||||||||||||  || | ||| || || ||||||||||| ||||||| |  || ||| ||||||||||||    
T  7972402 acatattaaatttattggaaagataaaatgtgtgcaaaaaaataggaaattattagtggattaaaatgagggtataatagaaaaaaagtgtgcaaaaata 7972303  T
Q  152 tacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
     |||||||| ||||  |||||| ||||||||||| ||||||||||    
T  7972302 cacttcgttatttttgtgttaaaattctaaaacgtcacttaaaaa 7972258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 6110801 - 6110663
Alignment:
Q  19 ttaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaa-aaaataagaacattttggtagattaaaa 117  Q
    ||||||||||| |||||||||||||| |||||| |||| |||||||||||| | |  |||||||||||||| ||||||| ||    || || ||||||||    
T  6110801 ttaactaacaattgtttgttacaagagaaagatgacatattaaatttattgaaaacggaaagtgtgtgcaagaaaataataattcattagtggattaaaa 6110702  T
Q  118 tgatggtataacatgaagaaaatgtgcaaaaatatactt 156  Q
    |||  |||||| |  ||||||||||| ||||||| ||||    
T  6110701 tgaaagtataatagaaagaaaatgtgtaaaaatacactt 6110663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 201
Target Start/End: Complemental strand, 21527064 - 21526915
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgcaa-aaaataagaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaata 151  Q
    |||| |||||||||||| | ||| ||||||||||||| |||||| |||  | || || ||||||||||| ||| ||| | ||| ||| ||||||||||||    
T  21527064 acatattaaatttattgaaaagataaagtgtgtgcaaaaaaataggaaattattagtggattaaaatgagggtgtaataggaaaaaagtgtgcaaaaata 21526965  T
Q  152 tacttcg-ttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
     |||||| |  ||||||| |||| |||||||||||||||||||||| ||||    
T  21526964 cacttcgctatttttgat-ttaaaattctaaaacgacacttaaaaaggaac 21526915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 8049679 - 8049747
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattg 69  Q
    |||||||||||||||||| |||  ||||| |||||||||  ||| ||||||||||| ||||||||||||    
T  8049679 ttgttggagaaaaagataataagcaacaattgtttgttatgagagaaagataacatattaaatttattg 8049747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 31656021 - 31656208
Alignment:
Q  10 aaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgca-aaaaataagaacattttggt 108  Q
    ||||||| | |||||||  | |||||||||  ||| ||| ||||||  |||||||||||| | ||||||  ||||| || ||||||| |||  | |||||    
T  31656021 aaaaagagagtaactaatgactgtttgttatgagagaaatataacacattaaatttattgaaaagagaacatgtgtccagaaaaatatgaatctattggt 31656120  T
Q  109 agattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    | |||||||||| ||||||| |  |||||||||||  |||||| ||||  ||  |||| ||||| ||||| |||| ||||||| ||||    
T  31656121 aaattaaaatgagggtataatagaaagaaaatgtgttaaaatacactttcttaatttggtgttactattccaaaatgacacttgaaaa 31656208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 188
Target Start/End: Original strand, 8461231 - 8461309
Alignment:
Q  110 gattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgaca 188  Q
    ||||||||| | |||| |||| ||| ||||||| |||||||| |||| | | |||| ||||||||||||||||| ||||    
T  8461231 gattaaaattagggtaaaacaggaaaaaaatgtacaaaaatacactttgctatttttatgttaatattctaaaatgaca 8461309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 17752254 - 17752216
Alignment:
Q  163 tttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  17752254 tttgatgttaatattctaaaacgacatttaaaaaggaac 17752216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1327 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 1199 - 1394
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtg-caaaaaataagaa 99  Q
    |||||||||||||||||| ||| | |||| |||||||||  ||| ||||||||||| |||||||||||| | ||| |||||||||| |||||||||| ||    
T  1199 ttgttggagaaaaagataataagtgacaattgtttgttaagagagaaagataacatattaaatttattgaaaagataaagtgtgtgtcaaaaaataaaaa 1298  T
Q  100 cattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaatatacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
      | ||||| |||||||||||  | |||| | ||||||||||| |||||||| || | | | || || ||||||| || ||||| || |||||||||    
T  1299 tttattggt-gattaaaatgagagcataataggaagaaaatgtacaaaaatacacattgctattctggtgttaattttttaaaaagatacttaaaaa 1394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1130 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 707 - 856
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaacattttggtagattaaaatgatggtataacatgaagaaaa-tgtgcaaaaata 151  Q
    |||| |||||||||||| | ||| ||| ||| ||||||||| | |||  | || |||||||||| ||| ||||||| | ||| |||| ||||||||||||    
T  707 acatattaaatttattggaaagataaaatgtttgcaaaaaaaaggaaattattagtagattaaattgagggtataataggaaaaaaagtgtgcaaaaata 806  T
Q  152 tacttcgttgttttgatgttaatattctaaaacgacacttaaaaaagaac 201  Q
     ||||  || |||| ||||||| ||| |||||||||||||||||| ||||    
T  807 cacttttttatttttatgttaaaattataaaacgacacttaaaaaggaac 856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 257213 - 257361
Alignment:
Q  3 gttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgc-aaaaaataagaaca 101  Q
    |||| ||||||||||| |||||  ||| |||||||| | ||| || |||||||| |||||||||||| | ||| ||||||||||| |||||||| |||      
T  257213 gttgaagaaaaagataataactg-caattgtttgtttcgagagaaggataacatattaaatttattgaaaagataaagtgtgtgcaaaaaaataggaatt 257311  T
Q  102 ttttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaata 151  Q
    | ||| | |||||| |||| ||||||| | |||||||||||| |||||||    
T  257312 tattgatggattaatatgagggtataataggaagaaaatgtgtaaaaata 257361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1986 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1986
Description:

Target: scaffold1986; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 568 - 716
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaataagaac 100  Q
    |||||||||||||||||| ||||  |||| ||||| |||| ||| |||||||||||  | ||||||||| | ||| |||||||||| ||||||  ||||     
T  568 ttgttggagaaaaagataataacagacaagtgtttattacgagagaaagataacatacttaatttattggaaagataaagtgtgtgtaaaaaaatagaaa 667  T
Q  101 att-ttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaa 148  Q
     || ||||| ||||||||| | ||||||| |  ||||||||||| ||||    
T  668 tttattggtggattaaaattagggtataatagaaagaaaatgtgtaaaa 716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 3777 - 3869
Alignment:
Q  1 ttgttggagaaaaagatattaactaacaaatgtttgttacaagataaagataacatgttaaatttattgtagagagaaagtgtgtgcaaaaaa 93  Q
    ||||| |||||| ||||| ||||||| |  | |||||||  ||| ||||||||||| |||||||||| | | |||||||||||||| ||||||    
T  3777 ttgttagagaaagagataataactaaaatttatttgttatgagacaaagataacatattaaatttatcggaaagagaaagtgtgtgaaaaaaa 3869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 46060 - 45917
Alignment:
Q  53 acatgttaaatttattgtagagagaaagtgtgtgcaaaaaataa--gaacattttggtagattaaaatgatggtataacatgaagaaaatgtgcaaaaat 150  Q
    |||| |||||||||||| | ||| ||| ||||||||||||| ||  |||  | || |||||||||| ||| |||| || | ||| ||| |||||||||||    
T  46060 acatattaaatttattggaaagataaaatgtgtgcaaaaaaaaaaagaaattattcgtagattaaattgagggtacaataggaaaaaagtgtgcaaaaat 45961  T
Q  151 atacttcgttgttttgatgttaatattctaaaacgacacttaaaaa 196  Q
    | | ||  || ||||  |||||| ||||||||||||||||||||||    
T  45960 acattt--ttatttttttgttaaaattctaaaacgacacttaaaaa 45917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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