View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5808_low_2 (Length: 651)
Name: NF5808_low_2
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5808_low_2 |
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| [»] scaffold0795 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 164 - 636
Target Start/End: Original strand, 17872446 - 17872919
Alignment:
| Q |
164 |
aattgaaaaaatggagaattgttattaattaaagtgatgctacatgatgttcaaattatgaggttaaaaagggaaaa-cacatatttttccctctagatt |
262 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
17872446 |
aattgaaaaaatggagaattattattaattaaagtgatgctacatgatgttcaaattatgaggttaaaaagggaaaaacacaaatttttccctctagatt |
17872545 |
T |
|
| Q |
263 |
aaataatgtgaaggcaaataatgcatgattaaaatatatttacgttatatgtacatatcaattaaattatctatttaatatttattttctcaacattgaa |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
17872546 |
aaataatgtgaaggcaaataatgcatgattaaaatatatttacgttatatgtacatatcaaataaattatctatttaatatttattttctcaatattgaa |
17872645 |
T |
|
| Q |
363 |
actagacatgtacgttgacattacctgaaaggccagagactgtcttcatagctttttgcttggttctgtcatcatgtatatccaccttcaatactagttt |
462 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17872646 |
actagacatgtacgttgacattacctgaaaggccagagactgtcttcatagctttttgcttggttctgtcatcatatatatccaccttcaatactagttt |
17872745 |
T |
|
| Q |
463 |
ctgtaacaaaacagaacaaaagatctttagattcaatccaaagaaaaaattaatagtgagagagagaatggacaaggatctagttcttaccatcattttc |
562 |
Q |
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||| |||||||||||| |||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17872746 |
ctgcaacaaaacagaataaaagatctttagattcaatgctaagaaaaaattattagtgagagagagaatggacaaggatctagttcttaccatcattttc |
17872845 |
T |
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| Q |
563 |
aataaagctttttgataatcaataaatcagaattgttggttaaaatttaaaagaagagctaaggtattggagct |
636 |
Q |
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| T |
17872846 |
aataaagctttttgataaccaataaatcagaattgttggttaaaattttaaagaagagctaaggtattggagct |
17872919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 248 - 636
Target Start/End: Original strand, 17861956 - 17862344
Alignment:
| Q |
248 |
ttttccctctagattaaataatgtgaaggcaaataatgcatgattaaaatatatttacgttatatgtacatatcaattaaattatctatttaatatttat |
347 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17861956 |
ttttccctctagattaaataaagtgaaggcaaataatgcatgagtaaaatatatttacgttatatgtacatatcaaataaattatctatttaatatttat |
17862055 |
T |
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| Q |
348 |
tttctcaacattgaaactagacatgtacgttgacattacctgaaaggccagagactgtcttcatagctttttgcttggttctgtcatcatgtatatccac |
447 |
Q |
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| T |
17862056 |
tttctcaatattgaaactagacatgtacattgacattacctgaaaggccagagactgtcttcatagctttttgcttggttctgtcatcatgtatatccac |
17862155 |
T |
|
| Q |
448 |
cttcaatactagtttctgtaacaaaacagaacaaaagatctttagattcaatccaaagaaaaaattaatagtgagagagagaatggacaaggatctagtt |
547 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17862156 |
cttcaatactagtttctgtaacaaaacagaacaaaatatctttagattcaatgcaaagaaaaaattaatagtgagagagagaatggacaaggatctagtt |
17862255 |
T |
|
| Q |
548 |
cttaccatcattttcaataaagctttttgataatcaataaatcagaattgttggttaaaatttaaaagaagagctaaggtattggagct |
636 |
Q |
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| T |
17862256 |
cttaccatcattttcaataaagctttttgataaccaataaatcagaattgttggttaaaattttaaagaagagctaaggtattggagct |
17862344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 17872298 - 17872390
Alignment:
| Q |
16 |
tcatgtccacagaaactgactctacccctacaaataatataccaatacaattttagcaaaaaacttaaaggtattacaatgttatatcatgag |
108 |
Q |
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| T |
17872298 |
tcatgtccacagaaactgattctacccctgcaaataatataccaatacaattttagcaaaaaaattaaaggtattacaatgttatatcatgag |
17872390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 17861696 - 17861790
Alignment:
| Q |
16 |
tcatgtccacagaaactgactctacccctacaaataatataccaatacaattttag---caaaaaacttaaaggtattacaatgttatatcatga |
107 |
Q |
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| T |
17861696 |
tcatgtccacagaaactgattctacccctgcaaataatatagcaatacgattttaggaagaaaaaaattaaaggtaatccaatgttatattatga |
17861790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 17861819 - 17861913
Alignment:
| Q |
16 |
tcatgtccacagaaactgactctacccctacaaataatataccaatacaattttag---caaaaaacttaaaggtattacaatgttatatcatga |
107 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||| |||||| ||||||| |||||| ||||||||| | ||||||||||| |||| |
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| T |
17861819 |
tcatgtccacagaaactgattctacccctgcaaataatatagcaatacgattttaggaagaaaaaaattaaaggtaatccaatgttatattatga |
17861913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 384 - 473
Target Start/End: Original strand, 45036293 - 45036382
Alignment:
| Q |
384 |
tacctgaaaggccagagactgtcttcatagctttttgcttggttctgtcatcatgtatatccaccttcaatactagtttctgtaacaaaa |
473 |
Q |
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| T |
45036293 |
tacctgaaaggccagagactgctttcatagctttttgcttgattttgtcttcatttatttccaactttaacacaactttctgtaacaaaa |
45036382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 45041579 - 45041641
Alignment:
| Q |
384 |
tacctgaaaggccagagactgtcttcatagctttttgcttggttctgtcatcatgtatatcca |
446 |
Q |
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| T |
45041579 |
tacctgaaaggccagagactgccttcatagccttttgcttgattctatcttcatttatttcca |
45041641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 438
Target Start/End: Original strand, 45043653 - 45043707
Alignment:
| Q |
384 |
tacctgaaaggccagagactgtcttcatagctttttgcttggttctgtcatcatg |
438 |
Q |
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|||| |||||||||||||||| ||||||||||||||| ||| || |||| ||||| |
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| T |
45043653 |
taccggaaaggccagagactgccttcatagctttttgtttgattttgtcttcatg |
45043707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 420
Target Start/End: Original strand, 46175757 - 46175794
Alignment:
| Q |
383 |
ttacctgaaaggccagagactgtcttcatagctttttg |
420 |
Q |
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| T |
46175757 |
ttacctgagaggccagagactgccttcatagctttttg |
46175794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 466
Target Start/End: Complemental strand, 11390449 - 11390367
Alignment:
| Q |
384 |
tacctgaaaggccagagactgtcttcatagctttttgcttggttctgtcatcatgtatatccaccttcaatactagtttctgt |
466 |
Q |
| |
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|||||||||||| ||| |||||||||||| ||||||||||| |||| |||| || | ||||||||||| |||| ||||||| |
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| T |
11390449 |
tacctgaaaggctagatactgtcttcataactttttgcttgattctatcattataaaagtccaccttcaacactactttctgt |
11390367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0795 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0795
Description:
Target: scaffold0795; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 3644 - 3697
Alignment:
| Q |
384 |
tacctgaaaggccagagactgtcttcatagctttttgcttggttctgtcatcat |
437 |
Q |
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|||||||||| ||||| ||||||||||| ||||||| |||| |||| ||||||| |
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| T |
3644 |
tacctgaaagaccagatactgtcttcatggcttttttcttgattctatcatcat |
3697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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