View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5808_low_22 (Length: 274)

Name: NF5808_low_22
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5808_low_22
NF5808_low_22
[»] chr5 (3 HSPs)
chr5 (18-264)||(13109532-13109781)
chr5 (18-263)||(13039538-13039786)
chr5 (164-245)||(13417066-13417146)
[»] chr2 (4 HSPs)
chr2 (138-245)||(24447923-24448033)
chr2 (200-254)||(7670385-7670439)
chr2 (216-253)||(1529732-1529769)
chr2 (143-250)||(16567767-16567877)
[»] chr8 (6 HSPs)
chr8 (138-254)||(22573078-22573197)
chr8 (138-245)||(40028765-40028875)
chr8 (213-264)||(556800-556851)
chr8 (217-251)||(32889976-32890010)
chr8 (199-264)||(31734323-31734388)
chr8 (201-253)||(11066492-11066544)
[»] chr4 (3 HSPs)
chr4 (138-253)||(22202869-22202987)
chr4 (213-254)||(34666430-34666471)
chr4 (215-253)||(26183677-26183715)
[»] chr7 (2 HSPs)
chr7 (139-251)||(10026381-10026496)
chr7 (228-264)||(47038530-47038566)
[»] chr1 (1 HSPs)
chr1 (138-254)||(45792731-45792849)
[»] chr6 (3 HSPs)
chr6 (177-264)||(8573831-8573918)
chr6 (177-264)||(8547478-8547565)
chr6 (218-250)||(2565887-2565919)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 13109532 - 13109781
Alignment:
Q  18 aaaccactacaatgatttctcaaactctcatttgaagttaaaccactccaaaaatttctacatctcgaaaatcagattaaaaattatgatgaaacttccg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||    
T  13109532 aaaccactacaatgatttctcaaactctcatttgaagttaaaccactccaaaaatttctacatgtcgaaaagcagactaaaaattatgatgaaacttccg 13109631  T
Q  118 tgttgactttctttaaaagtccgtttggtgtgcaggataaagagac---atatgattagaatattctatcctgtctcaatccactgtttggtgcgtccat 214  Q
    |||||| |||||||||||| |||||||||| |||||||||||||||   |||||||||| |||| ||||||||||| |||||| ||||||||||| ||||    
T  13109632 tgttgattttctttaaaagcccgtttggtgcgcaggataaagagacaaaatatgattagtatatcctatcctgtcttaatccattgtttggtgcgcccat 13109731  T
Q  215 aggaaatgataagtttaacctatttctaatcatatcctatccaccctttg 264  Q
    || |||||||||||||||| ||||||||||||||||||||||||||||||    
T  13109732 agaaaatgataagtttaacatatttctaatcatatcctatccaccctttg 13109781  T

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Target: chr5; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 13039538 - 13039786
Alignment:
Q  18 aaaccactacaatgatttctcaaactctcatttgaagttaaaccactccaaaaatttctacatctcgaaaatcagattaaaaattatgatgaaacttccg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||    
T  13039538 aaaccactacaatgatttctcaaactctcatttgaagttaaaccactccaaaaatttctacatgtcgaaaagcagactaaaaattatgatgaaacttccg 13039637  T
Q  118 tgttgactttctttaaaagtccgtttggtgtgcaggataaagagac---atatgattagaatattctatcctgtctcaatccactgtttggtgcgtccat 214  Q
    |||||| |||||||||||| |||||||||| |||||||||||||||   |||||||||| |||| ||||||||||| |||||| ||||||||||| ||||    
T  13039638 tgttgattttctttaaaagcccgtttggtgcgcaggataaagagacaaaatatgattagtatatcctatcctgtcttaatccattgtttggtgcgcccat 13039737  T
Q  215 aggaaatgataagtttaacctatttctaatcatatcctatccacccttt 263  Q
    ||||||||||||||||||| |||||||||| |||||||||||| |||||    
T  13039738 aggaaatgataagtttaacatatttctaattatatcctatccatccttt 13039786  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 13417146 - 13417066
Alignment:
Q  164 atatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctatttctaatc 245  Q
    ||||||||| | |||| ||||||| |||||||| | |||||||||  | | || ||| ||||||||||||||||||||||||    
T  13417146 atatgattaaattattatatcctgactcaatccgc-gtttggtgcaccaacagaaaaagataagtttaacctatttctaatc 13417066  T

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Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 24447923 - 24448033
Alignment:
Q  138 ccgtttggtgtgcaggataaagagacat---atgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 234  Q
    |||||||||| ||||||||| |||||||   ||||||| |||||| ||||||||||||||||  ||||||||| | |||||||||||||||||||||| |    
T  24447923 ccgtttggtgcgcaggataaggagacatgatatgattaaaatattttatcctgtctcaatccgttgtttggtgtgcccataggaaatgataagtttaatc 24448022  T
Q  235 tatttctaatc 245  Q
    ||||| |||||    
T  24448023 tatttgtaatc 24448033  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 7670385 - 7670439
Alignment:
Q  200 gtttggtgcgtccataggaaatgataagtttaacctatttctaatcatatcctat 254  Q
    |||||||||  | |||| |||||||||||||||||| ||||||||| ||||||||    
T  7670385 gtttggtgcaccaatagaaaatgataagtttaacctgtttctaatcctatcctat 7670439  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 1529769 - 1529732
Alignment:
Q  216 ggaaatgataagtttaacctatttctaatcatatccta 253  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  1529769 ggaaatgataagtttaacttatttttaatcatatccta 1529732  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 16567877 - 16567767
Alignment:
Q  143 tggtgtgcaggataaagagacat---atgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctattt 239  Q
    ||||| ||||||||| |||||||   |||||| || |||  |||| ||||| |||||  ||||||||||  | | || ||| ||||||||||||||||||    
T  16567877 tggtgcgcaggataaggagacatgatatgatttgattatcatatcatgtcttaatccgttgtttggtgcaccaacagaaaaggataagtttaacctattt 16567778  T
Q  240 ctaatcatatc 250  Q
    |||||| ||||    
T  16567777 ctaatcctatc 16567767  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 254
Target Start/End: Original strand, 22573078 - 22573197
Alignment:
Q  138 ccgtttggtgtgcaggataaagagacat---atgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 234  Q
    |||||||||| ||| ||||| |||||||   ||||||||||||| |||||||| ||||||||  ||||||||||  | | ||||||||||||||||||||    
T  22573078 ccgtttggtgcgcatgataaggagacatgatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacc 22573177  T
Q  235 tatttctaatcatatcctat 254  Q
    | ||||||||| ||||||||    
T  22573178 tgtttctaatcctatcctat 22573197  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 40028765 - 40028875
Alignment:
Q  138 ccgtttggtgtgcaggataaagagaca---tatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 234  Q
    |||||||||| ||||||||| ||||||   |||||||| |||||  ||||||| |||||||   ||||||||||| | | |||||||||||| |||||||    
T  40028765 ccgtttggtgcgcaggataaggagacaggatatgattaaaatatcatatcctgcctcaatctgttgtttggtgcgccaacaggaaatgataactttaacc 40028864  T
Q  235 tatttctaatc 245  Q
    | |||||||||    
T  40028865 tttttctaatc 40028875  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 556800 - 556851
Alignment:
Q  213 ataggaaatgataagtttaacctatttctaatcatatcctatccaccctttg 264  Q
    |||| ||||||||| || |||||||||||||||||||||||| |||||||||    
T  556800 atagaaaatgataaattaaacctatttctaatcatatcctattcaccctttg 556851  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 32889976 - 32890010
Alignment:
Q  217 gaaatgataagtttaacctatttctaatcatatcc 251  Q
    ||||||||||||||||||||||||||||| |||||    
T  32889976 gaaatgataagtttaacctatttctaatcctatcc 32890010  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 31734323 - 31734388
Alignment:
Q  199 tgtttggtgcgtccataggaaatgataagtttaacctatttctaatcatatcctatccaccctttg 264  Q
    ||||||||||  | ||| |||||||||| || |||||||||| |||| ||||| ||||||||||||    
T  31734323 tgtttggtgcaccaataagaaatgataaattaaacctatttccaatcttatcccatccaccctttg 31734388  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 11066492 - 11066544
Alignment:
Q  201 tttggtgcgtccataggaaatgataagtttaacctatttctaatcatatccta 253  Q
    ||||||| ||| |||||||| ||||| || ||||||||||||||| |||||||    
T  11066492 tttggtgtgtcaataggaaaggataacttaaacctatttctaatcctatccta 11066544  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 22202869 - 22202987
Alignment:
Q  138 ccgtttggtgtgcaggataaagagaca---tatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 234  Q
    |||||||||| ||||||||| ||||||   |||||| ||||||| ||||| |||| ||||||  |||||| |||| ||||| ||||||||||||||||||    
T  22202869 ccgtttggtgcgcaggataaggagacaggatatgatcagaatatcctatcgtgtcccaatccgttgtttgttgcgaccatatgaaatgataagtttaacc 22202968  T
Q  235 tatttctaatcatatccta 253  Q
    ||||| ||||| |||||||    
T  22202969 tatttttaatcctatccta 22202987  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 34666430 - 34666471
Alignment:
Q  213 ataggaaatgataagtttaacctatttctaatcatatcctat 254  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  34666430 ataggaaatgataacttaaacctatttctaatcatatcctat 34666471  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 26183677 - 26183715
Alignment:
Q  215 aggaaatgataagtttaacctatttctaatcatatccta 253  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  26183677 aggaaatgataagtttaacatatttctaatcctatccta 26183715  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 10026381 - 10026496
Alignment:
Q  139 cgtttggtgtgcaggataaagagaca---tatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacct 235  Q
    ||||||||| ||||||||| ||||||   |||||||||| |||  |||| ||||| |||||  ||||||||||  | | | |||||||||||||||||||    
T  10026381 cgtttggtgcgcaggataaggagacaggatatgattagattatcatatcttgtcttaatcccttgtttggtgcaccaacatgaaatgataagtttaacct 10026480  T
Q  236 atttctaatcatatcc 251  Q
    ||||||||||||||||    
T  10026481 atttctaatcatatcc 10026496  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 47038530 - 47038566
Alignment:
Q  228 tttaacctatttctaatcatatcctatccaccctttg 264  Q
    ||||||||||||||||||||||| || ||||||||||    
T  47038530 tttaacctatttctaatcatatcgtacccaccctttg 47038566  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 254
Target Start/End: Complemental strand, 45792849 - 45792731
Alignment:
Q  138 ccgtttggtgtgcaggataaagagacat---atgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 234  Q
    |||||||||||||||||||| |||||||   ||||||||||||| |||||||| ||||||||  | ||||||||  | | || ||||||||||||||||     
T  45792849 ccgtttggtgtgcaggataaggagacatgatatgattagaatatcctatcctgactcaatccgtt-tttggtgcaccaacagaaaatgataagtttaaca 45792751  T
Q  235 tatttctaatcatatcctat 254  Q
    | ||||||||| ||||||||    
T  45792750 tgtttctaatcctatcctat 45792731  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 8573918 - 8573831
Alignment:
Q  177 attctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctatttctaatcatatcctatccaccctttg 264  Q
    |||||||||||| ||||||| | |||||| || || |||||||||||||| || ||||||||||||||| |||| ||| |||||||||    
T  8573918 attctatcctgtttcaatcctccgtttggagcatcaataggaaatgataacttaaacctatttctaatcttatcatattcaccctttg 8573831  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 8547565 - 8547478
Alignment:
Q  177 attctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctatttctaatcatatcctatccaccctttg 264  Q
    |||||||| ||| ||||||| | |||||| || || |||||||| ||||| || ||||||||||||||| |||| ||| |||||||||    
T  8547565 attctatcatgtttcaatccgccgtttggagcatcaataggaaaggataacttaaacctatttctaatcttatcatattcaccctttg 8547478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 2565919 - 2565887
Alignment:
Q  218 aaatgataagtttaacctatttctaatcatatc 250  Q
    |||||||||||||||| ||||||||||||||||    
T  2565919 aaatgataagtttaacatatttctaatcatatc 2565887  T

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