View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5808_low_29 (Length: 234)
Name: NF5808_low_29
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5808_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 7954639 - 7954846
Alignment:
| Q |
15 |
attgaagcttctgaagcctatcctgatgtcacatacaccactgctgatgaatatttgaatcaatttgtctaagtttgtcatcccggaaatgttaaataag |
114 |
Q |
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| T |
7954639 |
attgaagcttctgaagcctatcctgatgtcacatacaccactgctgatgaatatttgaatcaatttgtctaagtttgtcatcccggaaatgttaaataag |
7954738 |
T |
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| Q |
115 |
acaaagattattttttcttaatagtttcacatgttgtaccacatcaattatattgttagttgtccttgttgtcttgttctcaataaaccttcccaattga |
214 |
Q |
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| T |
7954739 |
acaaagattattttttcttaatagtttcacatgttgtaccacatcaattatattgttagttgtccttgttgtcttgttctcaataaacctt-ccaattga |
7954837 |
T |
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| Q |
215 |
tgtaatatt |
223 |
Q |
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||||||||| |
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| T |
7954838 |
tgtaatatt |
7954846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 7967629 - 7967759
Alignment:
| Q |
15 |
attgaagcttctgaagcctatcctgatgtcacatacaccactgctgatgaatatttgaatcaatttgtctaagtttgtcatcccggaaatgttaaataag |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| || ||| |
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| T |
7967629 |
attgaagcttctgaagcctatcctgatgtcacatacaccactgctgatgaatatttgaatcaatttgtctaagtttgtcttcctgggaatgttcaaaaag |
7967728 |
T |
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| Q |
115 |
acaaagattattttttcttaatagtttcaca |
145 |
Q |
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|||||||| |||| || |||||||||||||| |
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| T |
7967729 |
acaaagatgatttctttttaatagtttcaca |
7967759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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