View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5808_low_33 (Length: 205)
Name: NF5808_low_33
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5808_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 8e-94; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 3686617 - 3686806
Alignment:
| Q |
1 |
ttgttttggccacctcctgattcaatcgtcaaaaactgaattcataattgagtttgttatcttgcattgaaaagattctaatgttatcgtggtataactt |
100 |
Q |
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| T |
3686617 |
ttgttttggccacctcctgattcaatcgtcaaaaactgaattcataattgagtttgttatcttgcattgaaaagattctaatgttttcgtggtataactt |
3686716 |
T |
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| Q |
101 |
tactgtgcttactctatcgtggacataataagcaacattggattcgtgcgcaaaacatggctgtatgcaaatttaatctattatcattat |
190 |
Q |
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| T |
3686717 |
taccgtgcttagtctatcgtggacataagaagcaacattggattcgtgcgcaaaacatggctgtatgcaaatttaatctattatcattat |
3686806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 3706868 - 3706947
Alignment:
| Q |
45 |
taattgagtttgttatcttgcattgaaaagattctaatgttatcgtggtataactttactgtgcttactctatcgtggac |
124 |
Q |
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| T |
3706868 |
taattgagtatgttatcttgcattgaaaatattctaatgtgatcgtggtataactttactgtgcttagtctatcttggac |
3706947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 3650669 - 3650596
Alignment:
| Q |
45 |
taattgagtttgttatcttgcattgaaaagattctaatgttatcgtggtataactttactgtgcttactctatc |
118 |
Q |
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| T |
3650669 |
taattgagtatgttatcttgcattgaaaatattctaatgtgatcgtggtataactttattgtgcttagtctatc |
3650596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 3695511 - 3695438
Alignment:
| Q |
47 |
attgagtttgttatcttgcattga---aaagattctaatgttatcgtggtataactttactgtgcttactctat |
117 |
Q |
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| T |
3695511 |
attgagtatgttatcatgcattgattaaaagattttaatgtgatcgtggtatagctttattgtgcttaccctat |
3695438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 213317 - 213418
Alignment:
| Q |
1 |
ttgttttggccacctcctgattcaatcgtcaaaaactgaattcataattgagtttgttatcttgcattgaaaagattctaatgttatcgtggtataactt |
100 |
Q |
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||||| ||||||||||| || | |||||||||| |||||||| ||| ||||| |||||||||||||||||| | ||| ||||||| ||| |||| ||| |
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| T |
213317 |
ttgttctggccacctcccgagtggatcgtcaaaagctgaattcgtaagtgagtatgttatcttgcattgaaaggtctctcatgttattgtgatatatctt |
213416 |
T |
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| Q |
101 |
ta |
102 |
Q |
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|| |
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| T |
213417 |
ta |
213418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 7046648 - 7046591
Alignment:
| Q |
54 |
ttgttatcttgcattgaaaagattctaatgttatcgtggtataactttactgtgctta |
111 |
Q |
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| T |
7046648 |
ttgttatcttgcattgaaaggtttctaatgtgatagtgatatagctttactatgctta |
7046591 |
T |
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