View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5808_low_5 (Length: 503)
Name: NF5808_low_5
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5808_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 3 - 260
Target Start/End: Complemental strand, 1288275 - 1288037
Alignment:
| Q |
3 |
cactaatattgtgtgtataatctacctgatatggtacatagtaatttttcaattcacacaaacacacttggtgttcgaacagagccatctggccatgacc |
102 |
Q |
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| T |
1288275 |
cactaatattgtgtgtataatctaccggatatgggacataataatttttcaattcacacaaacacacttggtgttccaac-------------------c |
1288195 |
T |
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| Q |
103 |
gtcgttctatccaatctctgctcaacttctctatctgcccattttctcctccaccacgtataaggataaccctccataacgatgttaatagggttgcatc |
202 |
Q |
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| T |
1288194 |
gtcgttctatccaatctctgctcaacttctctatctgcccattttctcctccaccacgtataaggataaccctccataacgatgttaatagggttgcatc |
1288095 |
T |
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| Q |
203 |
atcaactggctcccagaataattgattagttggaatgaattccaaacgatatataaat |
260 |
Q |
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| T |
1288094 |
atcaactggctcccagaatcattgattagttggaatgaattccaaacgatatataaat |
1288037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 337 - 489
Target Start/End: Complemental strand, 1288034 - 1287883
Alignment:
| Q |
337 |
agtagtattgtgatgtatcaagtgtgggaagannnnnnngttacaggcaagaggcatacaatttgcttaactgagtttagaaatttgtttgcttaactga |
436 |
Q |
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| T |
1288034 |
agtagtattatgatgtatcaagtgtgggaagatttttt-gttacaggcaagaggcatacaatttgcttaactgagtttagagatttgtttgcttaactga |
1287936 |
T |
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| Q |
437 |
gttcattctctaaaatggactgagcacgatcgagtactacgctacaagttttg |
489 |
Q |
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| T |
1287935 |
gttcattctctaaaatggactgagcacgatcgagtactacgctacaagttttg |
1287883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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