View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5809-Insertion-2 (Length: 455)

Name: NF5809-Insertion-2
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5809-Insertion-2
NF5809-Insertion-2
[»] chr7 (6 HSPs)
chr7 (9-426)||(4646357-4646757)
chr7 (19-236)||(41598510-41598727)
chr7 (253-424)||(41600999-41601166)
chr7 (19-176)||(17244982-17245139)
chr7 (13-152)||(3207540-3207679)
chr7 (348-426)||(8119204-8119282)
[»] chr3 (12 HSPs)
chr3 (19-236)||(31932796-31933013)
chr3 (19-236)||(31663383-31663600)
chr3 (19-201)||(31952130-31952312)
chr3 (9-236)||(8563466-8563693)
chr3 (13-155)||(6008559-6008701)
chr3 (13-155)||(17784288-17784430)
chr3 (13-155)||(19085807-19085949)
chr3 (13-155)||(19092915-19093057)
chr3 (247-425)||(31808721-31808896)
chr3 (19-173)||(49640081-49640235)
chr3 (247-426)||(8565573-8565749)
chr3 (349-422)||(31661382-31661455)
[»] chr2 (3 HSPs)
chr2 (19-236)||(25102099-25102316)
chr2 (49-90)||(20658733-20658774)
chr2 (65-134)||(45011398-45011467)
[»] scaffold0252 (2 HSPs)
scaffold0252 (19-158)||(5382-5521)
scaffold0252 (245-426)||(7476-7654)
[»] chr5 (3 HSPs)
chr5 (247-416)||(16084630-16084796)
chr5 (13-80)||(22289850-22289917)
chr5 (13-122)||(28244125-28244234)
[»] chr6 (3 HSPs)
chr6 (257-423)||(9958796-9958959)
chr6 (10-152)||(26904985-26905127)
chr6 (268-426)||(31028708-31028863)
[»] chr4 (2 HSPs)
chr4 (13-155)||(30856836-30856978)
chr4 (21-89)||(55225088-55225156)
[»] chr8 (7 HSPs)
chr8 (19-176)||(29338397-29338554)
chr8 (13-80)||(14503195-14503262)
chr8 (22-89)||(15993009-15993076)
chr8 (298-416)||(27978356-27978471)
chr8 (298-416)||(28035625-28035740)
chr8 (247-426)||(4517913-4518089)
chr8 (268-426)||(35284614-35284769)
[»] scaffold0011 (1 HSPs)
scaffold0011 (19-87)||(189071-189139)
[»] scaffold0789 (1 HSPs)
scaffold0789 (320-389)||(4616-4682)
[»] chr1 (1 HSPs)
chr1 (367-426)||(21701878-21701937)


Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 426
Target Start/End: Complemental strand, 4646757 - 4646357
Alignment:
Q  9 acagtttctccctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaat 108  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  4646757 acagtttccccctgatttaaatattactaacattgcccttattccaaaaggttctacgcaggttagcatgaaagattggcggtcaatagcactgttcaat 4646658  T
Q  109 gtgctatataaaattgtttctaaagtactagtgaacaggttgaagaatgtattatctcagtgcatctctaacaatcagttcgcgtttgttcccggacgtt 208  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  4646657 gtgctatataaaattgtttctaaagtactagcgaacaggttgaagaatgtattatctcagtgcatctctgacaatcagtccacgtttgttcccggacgtt 4646558  T
Q  209 ccattatggacaatgttatggtagcaatgctatggaatttggcaaatgctccggatacccttgcatctacttcggcttctcagcatgctatggctgcgca 308  Q
    ||||| ||||              ||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  4646557 ccattctgga--------------caatgctatggcatttggcgaatgctccggatacccttgcatctacttcagcttctcagcatgctatggttgcgca 4646472  T
Q  309 tacgggggcctccacctcacaccaacacaacatgatctaattgtggcagcctcctatgtcaggtagatataaatgtaatatcgacgcatcattttcttct 408  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||| |||| ||||||||||||||||||||||||||||| | |||||||||    
T  4646471 tacgggggcctccacctcacaccaacacaacatgatc---ttgtggcagcctcatatgccaggtagatataaatgtaatatcgacgcaactttttcttct 4646375  T
Q  409 catcataaccgcacaggt 426  Q
    ||||||||||||| ||||    
T  4646374 catcataaccgcataggt 4646357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 41598510 - 41598727
Alignment:
Q  19 cctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaatgtgctatata 118  Q
    |||||||||||||||||||||||| | |||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||||    
T  41598510 cctgatttaaatattactaacattgcacttattcctaaaggttccacgcaggttagtatgaaagattggcggccaatagcactatgcaatgtgttatata 41598609  T
Q  119 aaattgtttctaaagtactagtgaacaggttgaagaatgtattatctcagtgcatctctaacaatcagttcgcgtttgttcccggacgttccattatgga 218  Q
    ||||| | ||||||||  |||  ||||||||||||||||| || || ||||| |||||| | || ||||  |||||||||||||| || |||||| | ||    
T  41598610 aaattatatctaaagtgttagcaaacaggttgaagaatgttttgtcccagtgtatctctgataaccagtctgcgtttgttcccggtcgctccattctaga 41598709  T
Q  219 caatgttatggtagcaat 236  Q
     |||| ||||||||||||    
T  41598710 taatgatatggtagcaat 41598727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 253 - 424
Target Start/End: Original strand, 41600999 - 41601166
Alignment:
Q  253 aatgctccggatacccttgcatctacttcggcttctcagcatgctatggctgcgcatacgggggcctccacctcacaccaacacaacatgatctaattgt 352  Q
    |||||||| ||| |||||||||| |||||| || |||||||||  ||||||||||||| | |||||||| ||||||||||||||| ||  ||   |||||    
T  41600999 aatgctccagatgcccttgcatccacttcgcctcctcagcatgtaatggctgcgcatatgagggcctcctcctcacaccaacacaccaaaat---attgt 41601095  T
Q  353 ggcagcctcctatgtcaggtagatataaatgtaatatcgacgcatcattttcttctcatcataaccgcacag 424  Q
    ||||||| ||||  ||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||    
T  41601096 ggcagcc-cctacatcaggtagatataaatgtaatatcgacgcgtcgttttcttctcaccataatcgcacag 41601166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 17245139 - 17244982
Alignment:
Q  19 cctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaatgtgctatata 118  Q
    |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||| || || ||||| || |||||  | ||||    
T  17245139 cctgatttgaatattactaacattgctcttattccaaaaggttctacgcaggttagtatgaaggattggcgccctatagcactttgtaatgtcttgtata 17245040  T
Q  119 aaattgtttctaaagtactagtgaacaggttgaagaatgtattatctcagtgcatctc 176  Q
    ||||| |||| || ||||| |  |||||||||||||| || || ||||| ||||||||    
T  17245039 aaattatttccaaggtactcgcaaacaggttgaagaaagttttgtctcaatgcatctc 17244982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 3207679 - 3207540
Alignment:
Q  13 tttctccctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaatgtgc 112  Q
    |||| ||||||||||||| ||||||||||| | ||||||||||||| ||| | |||||||||||||||||| |||||||| || ||||| ||||| || |    
T  3207679 tttccccctgatttaaattttactaacattgcacttattccaaaagtttccatgcaggttagcatgaaagactggcggcctatcgcactatgcaacgtcc 3207580  T
Q  113 tatataaaattgtttctaaagtactagtgaacaggttgaa 152  Q
    | || |||||  | || ||||| |||| ||| ||||||||    
T  3207579 tttacaaaatcatctcaaaagtgctagcgaataggttgaa 3207540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 426
Target Start/End: Complemental strand, 8119282 - 8119204
Alignment:
Q  348 attgtggcagcctcctatgtcaggtagatataaatgtaatatcgacgcatcattttcttctcatcataaccgcacaggt 426  Q
    |||||||||||| || |  ||||||||||||||||| |||||||||||| | || || ||||||||||| |||||||||    
T  8119282 attgtggcagccccccacatcaggtagatataaatgcaatatcgacgcagcgttctcatctcatcataatcgcacaggt 8119204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 31932796 - 31933013
Alignment:
Q  19 cctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaatgtgctatata 118  Q
    ||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||    
T  31932796 cctgagttaaatattactaacattgcacttattcctaaaggttctacgcaggttagcatgaaagattggcggccaatagcactatgcaatgtgttatata 31932895  T
Q  119 aaattgtttctaaagtactagtgaacaggttgaagaatgtattatctcagtgcatctctaacaatcagttcgcgtttgttcccggacgttccattatgga 218  Q
    ||||| | || |||||  |||  ||||||||||||||||||||  ||||||| |||||| |||| |||| ||||||||||||||| || |||||| | ||    
T  31932896 aaattatatccaaagtgttagcaaacaggttgaagaatgtattgcctcagtgtatctctgacaaccagtccgcgtttgttcccggtcgctccattcttga 31932995  T
Q  219 caatgttatggtagcaat 236  Q
     ||||| |||||||||||    
T  31932996 taatgtcatggtagcaat 31933013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 31663600 - 31663383
Alignment:
Q  19 cctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaatgtgctatata 118  Q
    ||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||    
T  31663600 cctgagttaaatattactaacattgcacttattcctaaaggttctacgcaggttagcatgaaagattggcggccaatagcactatgcaatgtgttatata 31663501  T
Q  119 aaattgtttctaaagtactagtgaacaggttgaagaatgtattatctcagtgcatctctaacaatcagttcgcgtttgttcccggacgttccattatgga 218  Q
    ||||| | || |||||  |||  ||||||||||||||||||||  ||||||| || ||| |||| |||| ||||||||||||||| || |||||| | ||    
T  31663500 aaattatatccaaagtgttagcaaacaggttgaagaatgtattgcctcagtgtatatctgacaaccagtccgcgtttgttcccggtcgctccattcttga 31663401  T
Q  219 caatgttatggtagcaat 236  Q
     ||||| |||||||||||    
T  31663400 taatgtcatggtagcaat 31663383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 31952130 - 31952312
Alignment:
Q  19 cctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaatgtgctatata 118  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||    
T  31952130 cctgatttaaatattactaacattgcacttattcctaaaggttctacgcaggttagcatgaaagattggcggccaatagcactatgcaatgtgttatata 31952229  T
Q  119 aaattgtttctaaagtactagtgaacaggttgaagaatgtattatctcagtgcatctctaacaatcagttcgcgtttgttccc 201  Q
    ||||| | || |||||  |||  ||||||||||||||||||||  ||||||| |||||| |||| |||| |||||||||||||    
T  31952230 aaattatatccaaagtgttagcaaacaggttgaagaatgtattgcctcagtgtatctctgacaaccagtccgcgtttgttccc 31952312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 8563466 - 8563693
Alignment:
Q  9 acagtttctccctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaat 108  Q
    ||||||||  |||||||||||||||||||||||| | |||||||| ||||||||| |||||||||||||||| |||||||||||||| ||||| ||||||    
T  8563466 acagtttccacctgatttaaatattactaacattgcacttattcctaaaggttcttcgcaggttagcatgaaggattggcggccaatagcactttgcaat 8563565  T
Q  109 gtgctatataaaattgtttctaaagtactagtgaacaggttgaagaatgtattatctcagtgcatctctaacaatcagttcgcgtttgttcccggacgtt 208  Q
    ||  ||||||||||| ||||||||||  |||  |||||||||||| |||| || ||| ||||||| ||| | || ||||  || || || ||||| || |    
T  8563566 gttttatataaaattatttctaaagtgttagcaaacaggttgaagcatgtgttgtctaagtgcatttctgataaccagtctgctttcgtccccggtcgct 8563665  T
Q  209 ccattatggacaatgttatggtagcaat 236  Q
    ||||| | || |||| ||||||||||||    
T  8563666 ccattctagataatgctatggtagcaat 8563693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 6008701 - 6008559
Alignment:
Q  13 tttctccctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaatgtgc 112  Q
    |||| |||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| || || ||||| || ||||||     
T  6008701 tttccccctaatttgaatattactaacattgcccttatcccaaaaggttctacgcaggttagcatgaaggattggcgccctatagcactttgtaatgtgt 6008602  T
Q  113 tatataaaattgtttctaaagtactagtgaacaggttgaagaa 155  Q
    |||| |||||  |||| |||||  |||  ||| ||||||||||    
T  6008601 tatacaaaatcatttcgaaagtgttagcaaaccggttgaagaa 6008559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 17784288 - 17784430
Alignment:
Q  13 tttctccctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaatgtgc 112  Q
    |||| ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||| || ||||| || || ||||| || ||||||     
T  17784288 tttccccctgatttgaatattactaacattgcccttatttcaaaaggttctacgcaggttagcatgaaggactggcgccctatagcactttgtaatgtgt 17784387  T
Q  113 tatataaaattgtttctaaagtactagtgaacaggttgaagaa 155  Q
    |||| |||||  |||| |||||  |||  ||| ||||||||||    
T  17784388 tatacaaaatcatttcgaaagtgttagcaaaccggttgaagaa 17784430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 19085807 - 19085949
Alignment:
Q  13 tttctccctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaatgtgc 112  Q
    |||| ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||| || ||||| || || ||||| || ||||||     
T  19085807 tttccccctgatttgaatattactaacattgcccttatttcaaaaggttctacgcaggttagcatgaaggactggcgccctatagcactttgtaatgtgt 19085906  T
Q  113 tatataaaattgtttctaaagtactagtgaacaggttgaagaa 155  Q
    |||| |||||  |||| |||||  |||  ||| ||||||||||    
T  19085907 tatacaaaatcatttcgaaagtgttagcaaaccggttgaagaa 19085949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 19092915 - 19093057
Alignment:
Q  13 tttctccctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaatgtgc 112  Q
    |||| ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||| || ||||| || || ||||| || ||||||     
T  19092915 tttccccctgatttgaatattactaacattgcccttatttcaaaaggttctacgcaggttagcatgaaggactggcgccctatagcactttgtaatgtgt 19093014  T
Q  113 tatataaaattgtttctaaagtactagtgaacaggttgaagaa 155  Q
    |||| |||||  |||| |||||  |||  ||| ||||||||||    
T  19093015 tatacaaaatcatttcgaaagtgttagcaaaccggttgaagaa 19093057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 247 - 425
Target Start/End: Original strand, 31808721 - 31808896
Alignment:
Q  247 ttggcaaatgctccggatacccttgcatctacttcggcttctcagcatgctatggctgcgcatacgggggcctccacctcacaccaacacaacatgatct 346  Q
    ||||| ||| ||||||||  ||||||||| |||||| || |||||||||  ||| ||||||||| |||||||||| |||||||||| ||||  |   |      
T  31808721 ttggcgaattctccggatgtccttgcatccacttcgcctcctcagcatgtcatgcctgcgcatatgggggcctcctcctcacaccaccacagtagagt-- 31808818  T
Q  347 aattgtggcagcctcctatgtcaggtagatataaatgtaatatcgacgcatcattttcttctcatcataaccgcacagg 425  Q
     |||||||||||| || |  |||||||||||||||||||||||||||||| | || ||  |||||||||| ||||||||    
T  31808819 -attgtggcagccccccacatcaggtagatataaatgtaatatcgacgcagcgttctcaactcatcataatcgcacagg 31808896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 49640081 - 49640235
Alignment:
Q  19 cctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaatgtgctatata 118  Q
    |||||||| ||||||||||||||| | |||||||||||||||| | |||| ||||| ||||| |||||||| || || ||||| || |||||  | || |    
T  49640081 cctgatttgaatattactaacattgctcttattccaaaaggttatgcgcatgttagtatgaaggattggcgccctatagcactttgtaatgtcttgtaca 49640180  T
Q  119 aaattgtttctaaagtactagtgaacaggttgaagaatgtattatctcagtgcat 173  Q
    ||||| |||| || |||||||  |||||||||||||| || || ||||| |||||    
T  49640181 aaattatttccaaggtactagcaaacaggttgaagaaagttttgtctcaatgcat 49640235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 426
Target Start/End: Original strand, 8565573 - 8565749
Alignment:
Q  247 ttggcaaatgctccggatacccttgcatctacttcggcttctcagcatgctatggctgcgcatacgggggcctccacctcacaccaacacaa-catgatc 345  Q
    ||||| ||| ||||||||   |||||||| |||||| || |||||||||| ||| || |||||| |||||| ||| ||||||| || ||||| || | ||    
T  8565573 ttggcgaattctccggatgttcttgcatccacttcgtctcctcagcatgccatgcctacgcatatgggggcttcctcctcacatcatcacaatcaag-tc 8565671  T
Q  346 taattgtggcagcctcctatgtcaggtagatataaatgtaatatcgacgcatcattttcttctcatcataaccgcacaggt 426  Q
    |   |||||||||| || |  ||||||||||||||||| ||||| |||||| | || || |||||||| || |||||||||    
T  8565672 t---tgtggcagccccccacttcaggtagatataaatgcaatattgacgcagcgttctcatctcatcacaatcgcacaggt 8565749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 31661455 - 31661382
Alignment:
Q  349 ttgtggcagcctcctatgtcaggtagatataaatgtaatatcgacgcatcattttcttctcatcataaccgcac 422  Q
    ||||||||||| ||||  ||||||||||| || ||||||||||| ||  | || |||||||||||||| |||||    
T  31661455 ttgtggcagccccctacatcaggtagatacaagtgtaatatcgatgcggccttatcttctcatcataatcgcac 31661382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 25102099 - 25102316
Alignment:
Q  19 cctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaatgtgctatata 118  Q
    |||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||| |||||| ||| | ||||||||| ||||||    
T  25102099 cctgatttaaatattactaacattgcacttattcctaaaggttctacgcaggttagcatgaaagattggcagccaatagcattatgcaatgtgttatata 25102198  T
Q  119 aaattgtttctaaagtactagtgaacaggttgaagaatgtattatctcagtgcatctctaacaatcagttcgcgtttgttcccggacgttccattatgga 218  Q
    ||||| | || |||||  |||  |||||||||||||| |||||  |||||||||||||| | || | || ||||||||||||||| || |||||| | ||    
T  25102199 aaattatatccaaagtgttagcaaacaggttgaagaacgtattgcctcagtgcatctctgataacccgtccgcgtttgttcccggtcgctccattctaga 25102298  T
Q  219 caatgttatggtagcaat 236  Q
     |||| ||||||||||||    
T  25102299 taatgctatggtagcaat 25102316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 20658733 - 20658774
Alignment:
Q  49 attccaaaaggttctacgcaggttagcatgaaagattggcgg 90  Q
    ||||||||||||||  |||||||||||||||| |||||||||    
T  20658733 attccaaaaggttcctcgcaggttagcatgaaggattggcgg 20658774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 45011398 - 45011467
Alignment:
Q  65 cgcaggttagcatgaaagattggcggccaattgcactgtgcaatgtgctatataaaattgtttctaaagt 134  Q
    ||||||||||||||||||||||||| || || || || |||||||  ||||| |||||| | ||||||||    
T  45011398 cgcaggttagcatgaaagattggcgtcccatagctctttgcaatgccctatacaaaattatatctaaagt 45011467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 5382 - 5521
Alignment:
Q  19 cctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaatgtgctatata 118  Q
    |||||||||||||||| ||||||| | |||||||| ||||||| | ||||||||||||||||||||||||||||||| ||||| ||||||||  ||||||    
T  5382 cctgatttaaatattattaacattgcacttattcctaaaggttattcgcaggttagcatgaaagattggcggccaatagcactttgcaatgttttatata 5481  T
Q  119 aaattgtttctaaagtactagtgaacaggttgaagaatgt 158  Q
    ||||| | ||||||||  |||  |||||||||||| ||||    
T  5482 aaattatatctaaagtgttaggaaacaggttgaagcatgt 5521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 426
Target Start/End: Original strand, 7476 - 7654
Alignment:
Q  245 atttggcaaatgctccggatacccttgcatctacttcggcttctcagcatgctatggctgcgcatacgggggcctccacctcacaccaacacaacatgat 344  Q
    ||||||| ||| ||||||||  ||||||||| |||||| || |||| ||||  ||| ||||||||| |||||||||| |||||||||| ||||| |   |    
T  7476 atttggcgaattctccggatgtccttgcatccacttcgcctcctcaacatgtcatgcctgcgcatatgggggcctcctcctcacaccaccacaatagagt 7575  T
Q  345 ctaattgtggcagcctcctatgtcaggtagatataaatgtaatatcgacgcatcattttcttctcatcataaccgcacaggt 426  Q
       ||||||||||||||| |  |||||||||||||  ||||||||  ||||| | || || ||||||||||| |||||||||    
T  7576 ---attgtggcagcctcccacatcaggtagatataggtgtaatattaacgcagcgttctcatctcatcataatcgcacaggt 7654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 247 - 416
Target Start/End: Original strand, 16084630 - 16084796
Alignment:
Q  247 ttggcaaatgctccggatacccttgcatctacttcggcttctcagcatgctatggctgcgcatacgggggcctccacctcacaccaacacaacatgatct 346  Q
    ||||| |||||||| |||  ||||||||| |||||| || |||||||||  ||||||||||||| | |||||||| ||||||||||||||| ||  ||      
T  16084630 ttggcgaatgctccagatgtccttgcatccacttcgcctcctcagcatgtaatggctgcgcatatgagggcctcctcctcacaccaacacaccagaat-- 16084727  T
Q  347 aattgtggcagcctcctatgtcaggtagatataaatgtaatatcgacgcatcattttcttctcatcataa 416  Q
     |||||||||||| ||||  |||| ||||||||||||||||||||||||  ||||||||||||| |||||    
T  16084728 -attgtggcagccccctacatcagatagatataaatgtaatatcgacgcggcattttcttctcaccataa 16084796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 22289850 - 22289917
Alignment:
Q  13 tttctccctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaa 80  Q
    |||| ||||||||| ||||||||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  22289850 tttccccctgatttgaatattactaacattgcccttatcccaaaaggttctaagcaggttagcatgaa 22289917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 28244125 - 28244234
Alignment:
Q  13 tttctccctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaatgtgc 112  Q
    |||| ||||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||| |||||| || || || || || ||||| || ||||||     
T  28244125 tttccccctgatttgaatattactaatattgcccttatcccaaaaggttctacgcaggttaacatgaaggactgacgacctatagcactttgtaatgtgt 28244224  T
Q  113 tatataaaat 122  Q
    |||| |||||    
T  28244225 tatacaaaat 28244234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 257 - 423
Target Start/End: Original strand, 9958796 - 9958959
Alignment:
Q  257 ctccggatacccttgcatctacttcggcttctcagcatgctatggctgcgcatacgggggcctccacctcacaccaacacaacatgatctaattgtggca 356  Q
    ||||||||  ||||||||| |||||| || || ||||||  ||||  ||||||| |||||||||| ||||||| ||||||||||| ||   |||||||||    
T  9958796 ctccggatgtccttgcatccacttcgcctccttagcatgtcatggtcgcgcatatgggggcctcctcctcacagcaacacaacataat---attgtggca 9958892  T
Q  357 gcctcctatgtcaggtagatataaatgtaatatcgacgcatcattttcttctcatcataaccgcaca 423  Q
    ||| || |  |||||||||||||| ||||||||||||||||| |||||||||| |||||| ||||||    
T  9958893 gccccccacatcaggtagatataagtgtaatatcgacgcatcgttttcttctcttcataatcgcaca 9958959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 26904985 - 26905127
Alignment:
Q  10 cagtttctccctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaatg 109  Q
    ||||||| ||| ||||| || |||||||||||| | |||||||| ||||||||| ||||||||||||||   |||||||| || ||||| || || ||||    
T  26904985 cagtttcccccggatttgaacattactaacattgctcttattccgaaaggttcttcgcaggttagcatgcgcgattggcgtcccattgctctatgtaatg 26905084  T
Q  110 tgctatataaaattgtttctaaagtactagtgaacaggttgaa 152  Q
    | || ||||||||| |||| || ||  |||  |||||||||||    
T  26905085 ttctttataaaattatttcgaaggtcttagcaaacaggttgaa 26905127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 426
Target Start/End: Original strand, 31028708 - 31028863
Alignment:
Q  268 cttgcatctacttcggcttctcagcatgctatggctgcgcatacgggggcctccacctcacaccaacacaacatgatctaattgtggcagcctcctatgt 367  Q
    ||||||||| ||||| || |||||||||| ||| ||||||||| |||||| ||| |||||||||  | |||   | |   ||||||||||||||| |  |    
T  31028708 cttgcatctccttcgtctcctcagcatgccatgcctgcgcatatgggggcttcctcctcacaccctcccaatcaggt---attgtggcagcctcccactt 31028804  T
Q  368 caggtagatataaatgtaatatcgacgcatcattttcttctcatcataaccgcacaggt 426  Q
    |||||||||||||||| ||||| |||||| | ||||| |||||| | || |||||||||    
T  31028805 caggtagatataaatgcaatattgacgcagcgttttcatctcataacaatcgcacaggt 31028863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 30856836 - 30856978
Alignment:
Q  13 tttctccctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaatgtgc 112  Q
    |||| ||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || | ||| || || ||||| || ||||||     
T  30856836 tttccccctgatttgaatattactaacattgcccttatcccaaaaggttctacgcaggttagcatgaaggactagcgccctatagcactttgtaatgtgt 30856935  T
Q  113 tatataaaattgtttctaaagtactagtgaacaggttgaagaa 155  Q
    |||| |||||  |||| |||||  |||  ||| ||||||||||    
T  30856936 tatacaaaatcatttcgaaagtgttagcaaaccggttgaagaa 30856978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 55225088 - 55225156
Alignment:
Q  21 tgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcg 89  Q
    |||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || |||||    
T  55225088 tgatttgaatattactaacattgcccttatcccaaaaggttctacgcaggttagcatgaaggactggcg 55225156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 29338554 - 29338397
Alignment:
Q  19 cctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcggccaattgcactgtgcaatgtgctatata 118  Q
    |||||||| ||||||||||||||| | |||||||||||||||||||||||||||||  |||  |||||||| || ||  |||| || |||||  | ||||    
T  29338554 cctgatttgaatattactaacattgctcttattccaaaaggttctacgcaggttagtttgagggattggcgccctataacactttgtaatgtcttgtata 29338455  T
Q  119 aaattgtttctaaagtactagtgaacaggttgaagaatgtattatctcagtgcatctc 176  Q
    ||||| |||| || || || |  |||||||||||||| || || ||||| ||||||||    
T  29338454 aaattatttccaaggtcctcgcaaacaggttgaagaaagttttgtctcaatgcatctc 29338397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 14503195 - 14503262
Alignment:
Q  13 tttctccctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaa 80  Q
    |||| ||||||||| ||||||||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  14503195 tttccccctgatttgaatattactaacattgcccttatcccaaaaggttctaagcaggttagcatgaa 14503262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 15993076 - 15993009
Alignment:
Q  22 gatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattggcg 89  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || |||||    
T  15993076 gatttgaatattactaacattgcccttatcccaaaaggttctacgcaggttagcatgaaggactggcg 15993009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 416
Target Start/End: Original strand, 27978356 - 27978471
Alignment:
Q  298 atggctgcgcatacgggggcctccacctcacaccaacacaacatgatctaattgtggcagcctcctatgtcaggtagatataaatgtaatatcgacgcat 397  Q
    ||||||||| | | |||||||| | |||||||||||||||| |  ||||   |||| || || |||||||||||||||||||||||||||||||||||      
T  27978356 atggctgcgaacatgggggcctgctcctcacaccaacacaatagaatct---tgtgacaaccccctatgtcaggtagatataaatgtaatatcgacgcgg 27978452  T
Q  398 cattttcttctcatcataa 416  Q
    | ||||||| |||||||||    
T  27978453 ctttttcttgtcatcataa 27978471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 416
Target Start/End: Original strand, 28035625 - 28035740
Alignment:
Q  298 atggctgcgcatacgggggcctccacctcacaccaacacaacatgatctaattgtggcagcctcctatgtcaggtagatataaatgtaatatcgacgcat 397  Q
    ||||||||| | | |||||||| | |||||||||||||||| |  ||||   |||| || || |||||||||||||||||||||||||||||||||||      
T  28035625 atggctgcgaacatgggggcctgctcctcacaccaacacaatagaatct---tgtgacaaccccctatgtcaggtagatataaatgtaatatcgacgcgg 28035721  T
Q  398 cattttcttctcatcataa 416  Q
    | ||||||| |||||||||    
T  28035722 ctttttcttgtcatcataa 28035740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 426
Target Start/End: Original strand, 4517913 - 4518089
Alignment:
Q  247 ttggcaaatgctccggatacccttgcatctacttcggcttctcagcatgctatggctgcgcatacgggggcctccacctcacaccaacacaacatgatct 346  Q
    ||||| ||| ||||||||   |||||||| |||||| || ||| |||||| ||| ||||||||| |||||  ||| ||||||| || |||||  | |  |    
T  4517913 ttggcgaattctccggatgttcttgcatccacttcgtctcctctgcatgccatgcctgcgcatatgggggtttcctcctcacatcaccacaa--tcaagt 4518010  T
Q  347 aattgtggcagcctcctatgtcaggtagatataaatgtaatatcgacgcatcattttcttctcatcataaccgcacaggt 426  Q
    | |||||||| || || |  ||||||||||||||||| |||||||||||| | || || ||||||||||| |||||||||    
T  4518011 a-ttgtggcaaccccccacatcaggtagatataaatgcaatatcgacgcagcgttctcatctcatcataatcgcacaggt 4518089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 426
Target Start/End: Original strand, 35284614 - 35284769
Alignment:
Q  268 cttgcatctacttcggcttctcagcatgctatggctgcgcatacgggggcctccacctcacaccaacacaacatgatctaattgtggcagcctcctatgt 367  Q
    ||||||||| ||||| || |||||||||| ||| ||||||||| |||||| ||| ||||||||   | |||   | |   ||||||||||||||| |  |    
T  35284614 cttgcatctccttcgtctcctcagcatgccatgcctgcgcatatgggggcttcctcctcacacactcccaatcaggt---attgtggcagcctcccacat 35284710  T
Q  368 caggtagatataaatgtaatatcgacgcatcattttcttctcatcataaccgcacaggt 426  Q
    |||||||||||||||| ||||| |||||| | || || |||||| | || |||||||||    
T  35284711 caggtagatataaatgcaatattgacgcagcgttctcatctcataacaatcgcacaggt 35284769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 189139 - 189071
Alignment:
Q  19 cctgatttaaatattactaacatttcccttattccaaaaggttctacgcaggttagcatgaaagattgg 87  Q
    |||||||| ||||||||||||||| | ||||||||||||||||||||||| ||||| ||||| ||||||    
T  189139 cctgatttgaatattactaacattgctcttattccaaaaggttctacgcaagttagtatgaaggattgg 189071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0789 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 4682 - 4616
Alignment:
Q  320 ccacctcacaccaacacaacatgatctaattgtggcagcctcctatgtcaggtagatataaatgtaatat 389  Q
    ||||||||||||||||||||| |||||   ||||||| || |||||||||||||||||||| || |||||    
T  4682 ccacctcacaccaacacaacaggatct---tgtggcaaccccctatgtcaggtagatataagtgcaatat 4616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 426
Target Start/End: Complemental strand, 21701937 - 21701878
Alignment:
Q  367 tcaggtagatataaatgtaatatcgacgcatcattttcttctcatcataaccgcacaggt 426  Q
    ||||||||||||||||||||||||||||     ||||||||||| ||||| |||||||||    
T  21701937 tcaggtagatataaatgtaatatcgacgtggtgttttcttctcaccataatcgcacaggt 21701878  T

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