View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5809-Insertion-4 (Length: 622)
Name: NF5809-Insertion-4
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5809-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 37591840 - 37592146
Alignment:
| Q |
8 |
acattgtattaatttcttgctgcaaactgcttaatagttcaggagccaaagctcaactgtatgctaatcattttcagtcaatttcctatgttttgaatga |
107 |
Q |
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| T |
37591840 |
acattgtattaatttcttgctgcaaattgcttaatagttcaggagccaaagctcaactgtatgctaatcattttcagtcaatttcctatgttttgaatga |
37591939 |
T |
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| Q |
108 |
accgtgaatttggtccctaaactatcactttctctccattttgatatatagaaatataacaagtaatccctaaactataattaatccatctaattcttag |
207 |
Q |
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| T |
37591940 |
accgtgaatttggtccctaaactatcactttctctccattttgatatatagaaatataacaagtaatccctaaactataattaatccatctaattcttag |
37592039 |
T |
|
| Q |
208 |
gttccttcaagaatatgagagagaatgattactggcttacctcttccaaagatagattaagatccctcctgatagcatcttgagctggagatgaatatcc |
307 |
Q |
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| T |
37592040 |
gttccttcaagaatatgagagagaatgattactggcttacctcttccaaagacagattaagatccctcctgatagcatcttgagctggagatgaataccc |
37592139 |
T |
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| Q |
308 |
agtctgg |
314 |
Q |
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||||||| |
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| T |
37592140 |
agtctgg |
37592146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 368 - 616
Target Start/End: Original strand, 37592200 - 37592448
Alignment:
| Q |
368 |
tgctgatttacagagaaagaagtgaagacttacacaagcaccaaattcataagaaccacaaactgcaatgaatgtggtgaaataaagcatccatggataa |
467 |
Q |
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| T |
37592200 |
tgctgatttacagagaaagaagtgaagacttacacaagcaccaaattcataagaaccacaaactgcaatgaatgtggtgaaataaagcatccatggataa |
37592299 |
T |
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| Q |
468 |
tgatgatctttgtttgcatggacaagttggttgttgtgttcccctatcaatgcttctctcattcctttctgcttaccatcctccatttcctctttgattt |
567 |
Q |
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| T |
37592300 |
tgatgatctttgtttgcatggacaagttggttgttgtgttcccctatcaatggttctctcattcctttctgcttaccatcctccatttcctctttgattt |
37592399 |
T |
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| Q |
568 |
ccattttcgttcctatctgtgtgcgtagtacaattttaggttcttgtta |
616 |
Q |
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| T |
37592400 |
ccattttcgttcctatctgtttgcgtagtacaattttaggtccttgtta |
37592448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 368 - 571
Target Start/End: Complemental strand, 37462085 - 37461886
Alignment:
| Q |
368 |
tgctgatttacagagaaagaagtgaagacttacacaagcaccaaattcataagaaccacaaactgcaatgaatgtggtgaaataaagcatccatggataa |
467 |
Q |
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| T |
37462085 |
tgctgatttacag----agaagtaaagacttacacaagcaccaaattcataagaaccacaaactgcaatgaatgtggtgaagtaaaccatccatggatga |
37461990 |
T |
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| Q |
468 |
tgatgatctttgtttgcatggacaagttggttgttgtgttcccctatcaatgcttctctcattcctttctgcttaccatcctccatttcctctttgattt |
567 |
Q |
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| T |
37461989 |
tgatgatctttgtttgcatggacaagttggttgttttgttcacctatcaatggttctcttattcctttctgtttgccaccttccacatcctctttgatat |
37461890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 37462288 - 37462214
Alignment:
| Q |
235 |
attactggcttacctcttccaaagatagattaagatccctcctgatagcatcttgagctggagatgaatatccag |
309 |
Q |
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||||||||||||||||| ||||||| ||| |||||||| |||| ||||| ||||||| ||||||||||||||||| |
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| T |
37462288 |
attactggcttacctctgccaaagacagactaagatccttcctaatagcttcttgagttggagatgaatatccag |
37462214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 25492847 - 25492928
Alignment:
| Q |
114 |
aatttggtccctaaactatcactttctctccattttgatatatagaaatataacaagtaatccctaaactataattaatccatc |
197 |
Q |
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| T |
25492847 |
aatttggtccttaaactatcacattctctccaattt-at-tatagaaatgtaccaattagtccttaaactattattaatccatc |
25492928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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