View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5809_high_19 (Length: 250)
Name: NF5809_high_19
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5809_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 9727398 - 9727165
Alignment:
| Q |
1 |
tcaatgtcgatgcttttactttttcaagaaaatcaaaatctactcatgttttaactgtcggatctcgatcagacggtcctagatcccctgacggcaagga |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9727398 |
tcaatgtttatgcttttactttttcaagaaaatcaaaatcaactcatgttttaactgtcggatctcgatcagacggtcctagatcccctgacggcaagga |
9727299 |
T |
|
| Q |
101 |
atccgagttccataaataccaactcatatcccatactctccatcaagtacatccatccacccaaaaagtggaattattatttgttaaagcagcatcaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9727298 |
atccgagttccataaataccaactcatatcccatactctccatcaagtacatccatccacacaaaaagtggaattattatttgttaaagcagcatcaata |
9727199 |
T |
|
| Q |
201 |
gtcattttacattcgcctaataaaatagatttcg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
9727198 |
gtcattttacattcgcctaataaaatagatttcg |
9727165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University