View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5809_high_20 (Length: 246)

Name: NF5809_high_20
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5809_high_20
NF5809_high_20
[»] chr1 (2 HSPs)
chr1 (1-228)||(13062260-13062487)
chr1 (7-72)||(41035308-41035373)
[»] chr3 (3 HSPs)
chr3 (1-159)||(29346473-29346631)
chr3 (7-126)||(3395901-3396020)
chr3 (1-70)||(51524605-51524674)
[»] chr7 (2 HSPs)
chr7 (1-191)||(19408150-19408339)
chr7 (1-70)||(26449817-26449886)
[»] chr6 (2 HSPs)
chr6 (1-130)||(10989693-10989822)
chr6 (1-117)||(25167558-25167674)
[»] chr4 (3 HSPs)
chr4 (1-114)||(37049718-37049831)
chr4 (7-70)||(12580114-12580177)
chr4 (7-75)||(19852208-19852276)
[»] chr8 (3 HSPs)
chr8 (2-70)||(8831551-8831619)
chr8 (1-70)||(29368855-29368924)
chr8 (5-70)||(28226048-28226113)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13062260 - 13062487
Alignment:
Q  1 ccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcggcatgggagtaagcactggagtatccacccaagc 100  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  13062260 ccaagatttggcttgaagggagcttgtcaactgtcaaattagcatagctggtagttataggttgcggcataggagtaagtactggagtatccacccaagc 13062359  T
Q  101 ctttaacctgtctgaatccacaactctaacatcaatgctaccctgctcaaaagaaagggacgaagggttggggaatgacaccctcccaacattctgcctc 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13062360 ctttaacctgtctgaatccacaactctagcatcaatgctaccctgctcaaaagaaagggacgaagggttggggaatgacaccctcccaacattctgcctc 13062459  T
Q  201 atctgtttatcagaggagtcacccctag 228  Q
    ||||||||||||||||||| ||||||||    
T  13062460 atctgtttatcagaggagtgacccctag 13062487  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 41035308 - 41035373
Alignment:
Q  7 tttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcggcatgg 72  Q
    |||||||||||||||  ||||||  ||||||| || |||||  |||||||||||| ||||||||||    
T  41035308 tttggcttgaagggagtttgtcacttgtcaaactatcatagcgggtagttataggctgcggcatgg 41035373  T

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Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 29346631 - 29346473
Alignment:
Q  1 ccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcggcatgggagtaagcactggagtatccacccaagc 100  Q
    ||||||||||||||||||||| ||||||| ||||||||| ||||||| |||||| ||||||||||||||| || |||||||||||||||||||||||| |    
T  29346631 ccaaggtttggcttgaagggagcttgtcagctgtcaaataagcatagctggtaggtataggttgcggcataggggtaagcactggagtatccacccaaac 29346532  T
Q  101 ctttaacctgtctgaatccacaactctaacatcaatgctaccctgctcaaaagaaaggg 159  Q
    |||||||||||||||||||||| ||||| |||||| ||||||||||||||| |||||||    
T  29346531 ctttaacctgtctgaatccacacctctagcatcaaagctaccctgctcaaatgaaaggg 29346473  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 3395901 - 3396020
Alignment:
Q  7 tttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcggcatgggagtaagcactggagtatccacccaagcctttaa 106  Q
    ||||||||||||||| ||||  |  ||||||| |||||||| | |||||||||| |||||| || |||||||||||| ||||||| ||||||||||||||    
T  3395901 tttggcttgaagggagcttgctatttgtcaaactagcatagctagtagttatagcttgcggtataggagtaagcactagagtatctacccaagcctttaa 3396000  T
Q  107 cctgtctgaatccacaactc 126  Q
    |||||||| |||||||||||    
T  3396001 cctgtctggatccacaactc 3396020  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 51524674 - 51524605
Alignment:
Q  1 ccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcggcat 70  Q
    ||||| ||||||||||||||| |||||||  ||||||| || |||||  |||||||| ||| ||||||||    
T  51524674 ccaagatttggcttgaagggagcttgtcacttgtcaaactatcatagcgggtagttacaggctgcggcat 51524605  T

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Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 19408150 - 19408339
Alignment:
Q  1 ccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcggcatgggagtaagcactggagtatccacccaagc 100  Q
    ||||| ||||||||||||||| |||||||  |||||||||||||||| |||||||||||||||| | ||| ||||||||||||||||| |||| ||||||    
T  19408150 ccaagatttggcttgaagggagcttgtcagttgtcaaattagcatagctggtagttataggttgagacatcggagtaagcactggagtttccatccaagc 19408249  T
Q  101 ctttaacctgtctgaatccacaactctaacatcaatgctaccctgctcaaaagaaagggacgaagggttggggaatgacaccctcccaaca 191  Q
    ||||||| |||| | ||||| ||||||||||  | ||||| | ||||||| ||||||||||| ||||||||||||||||| ||||||||||    
T  19408250 ctttaacatgtcaggatccataactctaacagtagtgcta-cttgctcaatagaaagggacggagggttggggaatgacatcctcccaaca 19408339  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 26449817 - 26449886
Alignment:
Q  1 ccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcggcat 70  Q
    ||||| ||||| ||||||||| |||||||  ||||||| || |||||| |||||||| ||||||||||||    
T  26449817 ccaagttttggtttgaagggagcttgtcacttgtcaaactatcatagtaggtagttacaggttgcggcat 26449886  T

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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 10989822 - 10989693
Alignment:
Q  1 ccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcggcatgggagtaagcactggagtatccacccaagc 100  Q
    |||| |||||| ||||||||| |||||||| ||||||| ||||||||||||| ||| ||||||| ||||| |||||||||||||||||||| |||||| |    
T  10989822 ccaaagtttggtttgaagggagcttgtcaattgtcaaactagcatagttggttgttgtaggttgtggcataggagtaagcactggagtatctacccaatc 10989723  T
Q  101 ctttaacctgtctgaatccacaactctaac 130  Q
    ||| ||||||| || | |||||||||||||    
T  10989722 cttcaacctgtttggagccacaactctaac 10989693  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 25167674 - 25167558
Alignment:
Q  1 ccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcggcatgggagtaagcactggagtatccacccaagc 100  Q
    ||||| |||| |||||||||| |||||||  ||||||| |||||||| | |||||||||||||| ||||| |||||||||||||||||||| |||||||     
T  25167674 ccaagatttgacttgaagggagcttgtcaggtgtcaaactagcatagctagtagttataggttgaggcataggagtaagcactggagtatctacccaagt 25167575  T
Q  101 ctttaacctgtctgaat 117  Q
    ||||||||| |||||||    
T  25167574 ctttaacctatctgaat 25167558  T

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Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 37049831 - 37049718
Alignment:
Q  1 ccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcggcatgggagtaagcactggagtatccacccaagc 100  Q
    ||||| ||||||||||||||| |||||||  ||||||| |||||||| | |||||||||||||| ||||| ||||||||| |||||||||||||| |||     
T  37049831 ccaagatttggcttgaagggagcttgtcaggtgtcaaactagcatagctagtagttataggttgaggcataggagtaagccctggagtatccaccgaagt 37049732  T
Q  101 ctttaacctgtctg 114  Q
    ||||||||| ||||    
T  37049731 ctttaacctatctg 37049718  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 12580114 - 12580177
Alignment:
Q  7 tttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcggcat 70  Q
    ||||| ||||||||| |||||||  ||||||| || |||||| |||||||||||| ||||||||    
T  12580114 tttggtttgaagggagcttgtcacttgtcaaactatcatagtaggtagttataggctgcggcat 12580177  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 19852276 - 19852208
Alignment:
Q  7 tttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcggcatgggag 75  Q
    ||||||||||||||  |||||||  ||||||| |||||||  ||||||||| |||||| ||||| ||||    
T  19852276 tttggcttgaagggtgcttgtcacttgtcaaactagcataactggtagttacaggttgaggcataggag 19852208  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 8831551 - 8831619
Alignment:
Q  2 caaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcggcat 70  Q
    |||| ||||||||||||||| |||||||  ||||||| |||||||||||||||||| |||||| |||||    
T  8831551 caagatttggcttgaagggagcttgtcacttgtcaaactagcatagttggtagttacaggttgaggcat 8831619  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29368924 - 29368855
Alignment:
Q  1 ccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcggcat 70  Q
    |||| |||||||||||||||| ||| ||| |||||||| ||||||||||| |||| ||||||||| ||||    
T  29368924 ccaaagtttggcttgaagggagcttatcagctgtcaaactagcatagttgctagtaataggttgcagcat 29368855  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 28226048 - 28226113
Alignment:
Q  5 ggtttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcggcat 70  Q
    |||||||| |||||||| ||| |||  ||||||| |||||||||||||||||| | ||||||||||    
T  28226048 ggtttggcatgaagggatcttttcacttgtcaaactagcatagttggtagttacatgttgcggcat 28226113  T

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