View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5809_high_21 (Length: 241)
Name: NF5809_high_21
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5809_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 9521852 - 9521670
Alignment:
| Q |
42 |
caccactaagcaataacaactagccacctaaattgaattttaaaaacaacaatgataaataggaacatctaaatttaatacacatattcaacccttaatt |
141 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
9521852 |
caccaccaagcaataacaactagccacctaaattgaattttaaaaacaacaatgataaataggaacctctaaatttaatacacatatttaacccttaatt |
9521753 |
T |
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| Q |
142 |
ttctctctacccttctcttttttactcattgttttaac--atatannnnnnnngtagtggcccttgcatattttatgcattgt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| |
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| T |
9521752 |
ttctctctacccttctcttttttactcattgttttaacgtatattattttttggtagtagcccttgcatattttatgcattgt |
9521670 |
T |
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