View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5809_high_6 (Length: 373)
Name: NF5809_high_6
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5809_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 84 - 353
Target Start/End: Original strand, 9522018 - 9522278
Alignment:
| Q |
84 |
ttgcattataaatgcctcaagaaacttggagttggatttggaaattactggtagcagctagtgttcaatgttttggcatacagaggtgccaatgtttctt |
183 |
Q |
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| T |
9522018 |
ttgcattataaatgtctcaagaaatttggagttggatttggaaattactggtagcagctagtgttcaatgttttggcatacagaggtgtcaatgtttctt |
9522117 |
T |
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| Q |
184 |
ctgattgtccattttggcataatgaaaacgagactattctccactgtctcctccattgctctcgatatgttgcagtttggcatggttgtagtttccctaa |
283 |
Q |
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| T |
9522118 |
ctgattgtccattttggcataatgaaaacgagactattctccaccgtctcctccattgctctcgatatgttgcggcttggcagggttgtggtttccctaa |
9522217 |
T |
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| Q |
284 |
tccaatttcattgtgcttaggtgtggatgtggataatatagctaaggtaatccacaaaactgtgaaggat |
353 |
Q |
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| T |
9522218 |
tccaatttcattgtg---------ggatgtggataatatagttaaggtaatccacaaaatagtgaaggat |
9522278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 9521946 - 9521994
Alignment:
| Q |
11 |
aataagaaaaccaattcacatcggtaataagtaaaattgcatcattctt |
59 |
Q |
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| T |
9521946 |
aataagaaaaccaattcacatcggtaataagtaaaattgcatcattctt |
9521994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 154 - 338
Target Start/End: Complemental strand, 8963254 - 8963070
Alignment:
| Q |
154 |
ttttggcatacagaggtgccaatgtttcttctgattgtccattttggcataatgaaaacgagactattctccactgtctcctccattgctctcgatatgt |
253 |
Q |
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| T |
8963254 |
ttttggcatacaaagatgtcaatgtttttttttattgtccattttgtcataatgaagatgagactattctccaccgtctcctccatagctctcgatctgt |
8963155 |
T |
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| Q |
254 |
tgcagtttggcatggttgtagtttccctaatccaatttcattgtgcttaggtgtggatgtggataatatagctaaggtaatccac |
338 |
Q |
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| T |
8963154 |
cgcggtttggcagggcggtcgtttccctgatccaattttattgtgcttagatgtggatgtggataatatagctaaggtaatccac |
8963070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 173 - 338
Target Start/End: Original strand, 8956121 - 8956286
Alignment:
| Q |
173 |
caatgtttcttctgattgtccattttggcataatgaaaacgagactattctccactgtctcctccattgctctcgatatgttgcagtttggcatggttgt |
272 |
Q |
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| T |
8956121 |
caatgtttttttttattgtccattttatcataatgaagatgagactattctccaccgtctcctccatagctctcgatctaccgcggtttggcagggctgt |
8956220 |
T |
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| Q |
273 |
agtttccctaatccaatttcattgtgcttaggtgtggatgtggataatatagctaaggtaatccac |
338 |
Q |
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| T |
8956221 |
cgtttccctgatccaatttcattgtgcttagatgtggatgtggataatatagctaaggtaatccac |
8956286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 9041544 - 9041684
Alignment:
| Q |
213 |
gagactattctccactgtctcctccattgctctcgatatgttgcagtttggcatggttgtagtttccctaatccaatttcattgtgcttaggtgtggatg |
312 |
Q |
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| T |
9041544 |
gagactattctccattgtctcctccattgctctcgatctgctgcggttttgcagggatgtggtttacctggtctaatttcattgtgcttaggtgtggatg |
9041643 |
T |
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| Q |
313 |
tggataatatagctaaggtaatccacaaaactgtgaaggat |
353 |
Q |
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| T |
9041644 |
tggataatatagctaaggtaatccataaaacagtgaaggat |
9041684 |
T |
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