View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5809_low_17 (Length: 258)
Name: NF5809_low_17
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5809_low_17 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 22247615 - 22247856
Alignment:
| Q |
1 |
agatcaaagaagtttgggtcgccagagtgacggagcatggaaagcagtagcatacaatgctgcagctgatgcgttgtctgcacgttttaatgtccagctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22247615 |
agatcaaagaagtttgggtcgccagagtgacggagcatggaaagcagtggcatacaatgctgcaactgatgcgttgtctgcacgttttaatgtccagctt |
22247714 |
T |
|
| Q |
101 |
atcggagataatgtgataaaccacatcaaactttggcgaggatggtacgagatagtaagtgatatcctcagtcaaagtggatttgattgggatgccccaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22247715 |
atcggagataatgtgataaaccacatcaaactttggcaaggatggtacgagatagtaagtgatatcctcagtcaaagtggatttgatcgggatgccccaa |
22247814 |
T |
|
| Q |
201 |
aatgcatgattaatgttgaagatgaaaatgcatggaatgaat |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
22247815 |
aatgcatgattaatgttgaagatgaaaatgcatggaatgaat |
22247856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 41316094 - 41316335
Alignment:
| Q |
1 |
agatcaaagaagtttgggtcgccagagtgacggagcatggaaagcagtagcatacaatgctgcagctgatgcgttgtctgcacgttttaatgtccagctt |
100 |
Q |
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||||||||||||| |||| ||||||| | ||||| |||||| ||| ||||||||| ||||||||||||| ||||||| ||||||||||||| |||||| |
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| T |
41316094 |
agatcaaagaagtatgggccgccagactaacggaatttggaaaacagaagcatacaaagctgcagctgatgtgttgtctacacgttttaatgttcagctt |
41316193 |
T |
|
| Q |
101 |
atcggagataatgtgataaaccacatcaaactttggcgaggatggtacgagatagtaagtgatatcctcagtcaaagtggatttgattgggatgccccaa |
200 |
Q |
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|||||||| ||||||| ||||| | |||||||||||||| ||||||| | |||||| | |||||| |||||||||| |||||||| |||||||| | ||| |
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| T |
41316194 |
atcggagagaatgtgaaaaaccgcgtcaaactttggcgaagatggtatgggatagttaatgatattctcagtcaaaatggatttggttgggatggcacaa |
41316293 |
T |
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| Q |
201 |
aatgcatgattaatgttgaagatgaaaatgcatggaatgaat |
242 |
Q |
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| || ||||||| || ||||||||||||||||||||||||| |
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| T |
41316294 |
actgtatgattaccgtcgaagatgaaaatgcatggaatgaat |
41316335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 44612009 - 44612250
Alignment:
| Q |
1 |
agatcaaagaagtttgggtcgccagagtgacggagcatggaaagcagtagcatacaatgctgcagctgatgcgttgtctgcacgttttaatgtccagctt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
44612009 |
agatcaaagaagtttgggtcgccagagtgacggagcatggaaagcagtggcatagaacgctgcagctgatgtgttgtcagcacgttttaatgtccagctt |
44612108 |
T |
|
| Q |
101 |
atcggagataatgtgataaaccacatcaaactttggcgaggatggtacgagatagtaagtgatatcctcagtcaaagtggatttgattgggatgccccaa |
200 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
44612109 |
atcggagataatgtgaaaaaccgaatcaaactttggcgaggatggtacgggatagtaagtgatattcttagtcaaagtggatttgattgggatgccccaa |
44612208 |
T |
|
| Q |
201 |
aatgcatgattaatgttgaagatgaaaatgcatggaatgaat |
242 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44612209 |
aatgcatgattaatgtcgaagatgaaaatgcatggaatgaat |
44612250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 10070 - 9835
Alignment:
| Q |
7 |
aagaagtttgggtcgccagagtgacggagcatggaaagcagtagcatacaatgctgcagctgatgcgttgtctgcacgttttaatgtccagcttatcgga |
106 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
10070 |
aagaagtttgggtcgccagagtgatggagcatggaaagcagtggcatacaacgctgcagctgatgtgttgtcagcacgttttaatgtccagcttatcgga |
9971 |
T |
|
| Q |
107 |
gataatgtgataaaccacatcaaactttggcgaggatggtacgagatagtaagtgatatcctcagtcaaagtggatttgattgggatgccccaaaatgca |
206 |
Q |
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|||||||||| ||| | |||||||||||| |||||||||||| ||||||||||||||| || ||||||||||||||||||||| ||||||||||||||| |
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| T |
9970 |
gataatgtgaaaaatcgaatcaaactttggtgaggatggtacgggatagtaagtgatattcttagtcaaagtggatttgattggaatgccccaaaatgca |
9871 |
T |
|
| Q |
207 |
tgattaatgttgaagatgaaaatgcatggaatgaat |
242 |
Q |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
9870 |
tgattaatgtcgaagatgaaaatgcatggaatgaat |
9835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 106 - 242
Target Start/End: Original strand, 1991568 - 1991700
Alignment:
| Q |
106 |
agataatgtgataaaccacatcaaactttggcgaggatggtacgagatagtaagtgatatcctcagtcaaagtggatttgattgggatgccccaaaatgc |
205 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
1991568 |
agataatgtgaaaaactgaatcaaactttggcgaggatggtac-agata---agtgatattctcggtcaaagtggatttgattgggatgccccaaaatgc |
1991663 |
T |
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| Q |
206 |
atgattaatgttgaagatgaaaatgcatggaatgaat |
242 |
Q |
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||||||||||| |||||||||||| ||||||||||| |
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| T |
1991664 |
atgattaatgtcgaagatgaaaataaatggaatgaat |
1991700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 3297658 - 3297747
Alignment:
| Q |
153 |
tagtaagtgatatcctcagtcaaagtggatttgattgggatgccccaaaatgcatgattaatgttgaagatgaaaatgcatggaatgaat |
242 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3297658 |
tagttagtgatatcctcaggcaaagtggatttgattgggatgacccaaaatgcatgattaatgttgaagatgaaaatgcatggaatgaat |
3297747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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