View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5809_low_18 (Length: 252)

Name: NF5809_low_18
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5809_low_18
NF5809_low_18
[»] chr7 (5 HSPs)
chr7 (84-242)||(7543895-7544053)
chr7 (93-242)||(19407683-19407831)
chr7 (1-47)||(19407866-19407912)
chr7 (118-228)||(29132251-29132362)
chr7 (188-228)||(16099839-16099879)
[»] chr3 (6 HSPs)
chr3 (90-242)||(29346977-29347129)
chr3 (95-241)||(35526351-35526497)
chr3 (2-90)||(29346850-29346939)
chr3 (188-235)||(49106832-49106879)
chr3 (1-50)||(16893128-16893177)
chr3 (1-53)||(51524918-51524970)
[»] chr1 (6 HSPs)
chr1 (93-242)||(13061751-13061900)
chr1 (1-91)||(13061940-13062031)
chr1 (105-235)||(44163556-44163688)
chr1 (1-42)||(49491908-49491949)
chr1 (1-50)||(50903502-50903551)
chr1 (1-41)||(39332385-39332425)
[»] chr5 (6 HSPs)
chr5 (90-242)||(19215560-19215712)
chr5 (105-235)||(32278505-32278637)
chr5 (93-234)||(788078-788217)
chr5 (9-79)||(788265-788336)
chr5 (1-62)||(32278714-32278775)
chr5 (159-228)||(36868515-36868583)
[»] chr8 (3 HSPs)
chr8 (95-242)||(3801149-3801296)
chr8 (183-242)||(29369348-29369407)
chr8 (8-78)||(29369161-29369232)
[»] chr6 (3 HSPs)
chr6 (159-242)||(3949584-3949667)
chr6 (159-228)||(5605472-5605541)
chr6 (1-62)||(25167894-25167955)
[»] chr4 (5 HSPs)
chr4 (183-242)||(7492271-7492330)
chr4 (105-235)||(37050195-37050326)
chr4 (183-242)||(7500322-7500381)
chr4 (1-51)||(37050052-37050102)
chr4 (1-43)||(24239870-24239912)
[»] chr2 (5 HSPs)
chr2 (1-78)||(31092367-31092445)
chr2 (1-59)||(37344670-37344728)
chr2 (1-62)||(18811713-18811774)
chr2 (188-235)||(37344844-37344891)
chr2 (183-237)||(31092561-31092615)
[»] scaffold0531 (1 HSPs)
scaffold0531 (1-43)||(10310-10352)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 84 - 242
Target Start/End: Complemental strand, 7544053 - 7543895
Alignment:
Q  84 atagatggcagtcttgtagctgttgtttggcctagaatggtcatagtttgactagttttctattcaatgtctgtatttgacacctctttcattaggccct 183  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| |||||||||||    
T  7544053 atagagggcagtcttttagctgttgtttggcctagaatggtcatagtttgactagttttctgttcagtggctgtatttgacacctcttacattaggccct 7543954  T
Q  184 ttcttttcttgggatagacccggtttctcttttcataggttttactctatgtatctctg 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7543953 ttcttttcttgggatagacccggtttctcttttcataggttttactctatgtatctctg 7543895  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 93 - 242
Target Start/End: Complemental strand, 19407831 - 19407683
Alignment:
Q  93 agtcttgtagctgttgtttggcctagaatggtcatagtttgactagttttctattcaatgtctgtatttgacacctctttcattaggccctttcttttct 192  Q
    |||||| |||||||||||||||| ||||||||| || | | ||||||||||| |||||||  ||| |||||||||| |||||| ||| |||||| ||| |    
T  19407831 agtcttttagctgttgtttggccaagaatggtc-taatctaactagttttctgttcaatggttgtctttgacacctgtttcatcagggcctttccttttt 19407733  T
Q  193 tgggatagacccggtttctcttttcataggttttactctatgtatctctg 242  Q
    | ||||| |||||||||||||||||||||||||||| |||||||||||||    
T  19407732 tcggataaacccggtttctcttttcataggttttacactatgtatctctg 19407683  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 19407912 - 19407866
Alignment:
Q  1 cagccgaaatgaggacccgtgcccaaaagagtacctccaaagccgcc 47  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||    
T  19407912 cagccggaatgaggacccgtgcccaaaagggtacctccaaagccgcc 19407866  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 29132362 - 29132251
Alignment:
Q  118 gaatggtcatagtttgactagttttc-tattcaatgtctgtatttgacacctctttcattaggccctttcttttcttgggatagacccggtttctctttt 216  Q
    ||||||||||| |||||||||||||  | | |||||   || ||||||||||||||  ||||  | |||| ||||||||||||||  |||||| ||||||    
T  29132362 gaatggtcataatttgactagtttttatgtacaatggtcgtctttgacacctctttttttagaacttttcctttcttgggatagattcggtttttctttt 29132263  T
Q  217 cataggttttac 228  Q
    |||| |||||||    
T  29132262 cataagttttac 29132251  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 16099839 - 16099879
Alignment:
Q  188 tttcttgggatagacccggtttctcttttcataggttttac 228  Q
    ||||| |||||||| ||||||||||||| ||||||||||||    
T  16099839 tttctcgggatagatccggtttctctttccataggttttac 16099879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 90 - 242
Target Start/End: Original strand, 29346977 - 29347129
Alignment:
Q  90 ggcagtcttgtagctgttgtttggcctagaatggtcatagtttgactagttttctattcaatgtctgtatttgacacctctttcattaggccctttcttt 189  Q
    ||||||||| ||| ||||||||||||| ||||||||||||||||||||||||| | |||||||  ||||||||||||||||||||||||||| |||||||    
T  29346977 ggcagtcttttagttgttgtttggcctggaatggtcatagtttgactagttttatgttcaatggttgtatttgacacctctttcattaggccttttcttt 29347076  T
Q  190 tcttgggatagacccggtttctcttttcataggttttactctatgtatctctg 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29347077 tcttgggatagacccggtttctcttttcataggttttactctatgtatctctg 29347129  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 35526497 - 35526351
Alignment:
Q  95 tcttgtagctgttgtttggcctagaatggtcatagtttgactagttttctattcaatgtctgtatttgacacctctttcattaggccctttcttttcttg 194  Q
    |||| ||||| ||||| |||| |  ||||||||| ||||||||||||| | | |||||  ||| |||||||||| |||||||||||| |||| |||||||    
T  35526497 tcttttagctattgttgggccaaacatggtcataatttgactagttttatgtacaatggttgtttttgacacctgtttcattaggccatttcctttcttg 35526398  T
Q  195 ggatagacccggtttctcttttcataggttttactctatgtatctct 241  Q
    | ||||  | |||||||||||||||| ||||||||||||||||||||    
T  35526397 gaatagctctggtttctcttttcataagttttactctatgtatctct 35526351  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 29346850 - 29346939
Alignment:
Q  2 agccgaaatgaggacccgtgcccaaaagagtacctccaaagccgccttgacaaatacagaa-aattggtccagttgcaaaagtatagatg 90  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||| || | |||||||| |||||| ||||||||||    
T  29346850 agccggaatgaggacccgtgcacaaaagagtacctccaaagccgccttgacagatacataatagttggtccaattgcaagagtatagatg 29346939  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 49106879 - 49106832
Alignment:
Q  188 tttcttgggatagacccggtttctcttttcataggttttactctatgt 235  Q
    |||||||||||||| |||||||||||||||||||||||| | ||||||    
T  49106879 tttcttgggatagatccggtttctcttttcataggtttttcactatgt 49106832  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 16893128 - 16893177
Alignment:
Q  1 cagccgaaatgaggacccgtgcccaaaagagtacctccaaagccgccttg 50  Q
    |||||| ||||||||||||||| |||||| || |||||||||| ||||||    
T  16893128 cagccggaatgaggacccgtgctcaaaagggtgcctccaaagctgccttg 16893177  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 51524918 - 51524970
Alignment:
Q  1 cagccgaaatgaggacccgtgcccaaaagagtacctccaaagccgccttgaca 53  Q
    |||||| |||||||||||||||||||||| |  ||||||||||  ||||||||    
T  51524918 cagccggaatgaggacccgtgcccaaaagggctcctccaaagctaccttgaca 51524970  T

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Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 93 - 242
Target Start/End: Complemental strand, 13061900 - 13061751
Alignment:
Q  93 agtcttgtagctgttgtttggcctagaatggtcatagtttgactagttttctattcaatgtctgtatttgacacctctttcattaggccctttcttttct 192  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||||||||| |||| |||||    
T  13061900 agtcttttagctgttgtttggcctagaatggtcgtagtttgactagttttctgttcaatggttgtatttgacacctctttcattaggccttttcatttct 13061801  T
Q  193 tgggatagacccggtttctcttttcataggttttactctatgtatctctg 242  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13061800 tgggatagactcggtttctcttttcataggttttactctatgtatctctg 13061751  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 13062031 - 13061940
Alignment:
Q  1 cagccgaaatgaggacccgtgcccaaaagagtacctccaaagccgccttgacaaatacagaa-aattggtccagttgcaaaagtatagatgg 91  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  13062031 cagccgaaatgaggacccgtgctgaaaagagtacctccaaagccgccttgacaaatacagaataattggtccaattgcaaaagtatagatgg 13061940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 44163688 - 44163556
Alignment:
Q  105 gttgtttggcctagaatggtcatagttt-gactagttttc-tattcaatgtctgtatttgacacctctttcattaggccctttcttttcttgggatagac 202  Q
    ||||||||||| |||||||||||| ||| ||||||||||  | |||  || |||| |||||||| || ||| | ||| | || | ||||||||||||||     
T  44163688 gttgtttggccaagaatggtcatactttagactagtttttatgttctttgactgtctttgacacatcgttcctcagggcattacctttcttgggatagat 44163589  T
Q  203 ccggtttctcttttcataggttttactctatgt 235  Q
    |||||||||||||||||||||||||| ||||||    
T  44163588 ccggtttctcttttcataggttttacactatgt 44163556  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 49491949 - 49491908
Alignment:
Q  1 cagccgaaatgaggacccgtgcccaaaagagtacctccaaag 42  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  49491949 cagccggaatgaggacccgtgcccaaaagggtacctccaaag 49491908  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 50903551 - 50903502
Alignment:
Q  1 cagccgaaatgaggacccgtgcccaaaagagtacctccaaagccgccttg 50  Q
    |||||||||||||||||||||||||||   ||||||||||||||| ||||    
T  50903551 cagccgaaatgaggacccgtgcccaaagcggtacctccaaagccgacttg 50903502  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39332385 - 39332425
Alignment:
Q  1 cagccgaaatgaggacccgtgcccaaaagagtacctccaaa 41  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  39332385 cagccgaaatgaggacccgtgcccaaaagggtaccttcaaa 39332425  T

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Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 90 - 242
Target Start/End: Original strand, 19215560 - 19215712
Alignment:
Q  90 ggcagtcttgtagctgttgtttggcctagaatggtcatagtttgactagttttctattcaatgtctgtatttgacacctctttcattaggccctttcttt 189  Q
    ||||||||| |||||||||||||||| ||||  | |||| ||||||||||||||| |  ||||  ||| |||||||||| |||||||||| |||||| ||    
T  19215560 ggcagtcttttagctgttgtttggccaagaacagacataatttgactagttttctgtataatggttgtctttgacacctatttcattaggtcctttcctt 19215659  T
Q  190 tcttgggatagacccggtttctcttttcataggttttactctatgtatctctg 242  Q
    |||||| ||||| |  |||||||||||||||||||||| |||||| |||||||    
T  19215660 tcttggaatagatctagtttctcttttcataggttttagtctatgcatctctg 19215712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 32278637 - 32278505
Alignment:
Q  105 gttgtttggcctagaatggtcatagttt-gactagtttt-ctattcaatgtctgtatttgacacctctttcattaggccctttcttttcttgggatagac 202  Q
    ||||||||||| |||||||||||| ||| |||||||||| || |||| ||  ||| ||||||||||| ||| ||||| | || ||||||||||||||||     
T  32278637 gttgtttggccaagaatggtcatacttttgactagtttttctgttcattggttgtctttgacacctcgttccttaggacattccttttcttgggatagat 32278538  T
Q  203 ccggtttctcttttcataggttttactctatgt 235  Q
    |||||||||||||||||||||||||| ||||||    
T  32278537 ccggtttctcttttcataggttttacactatgt 32278505  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 234
Target Start/End: Complemental strand, 788217 - 788078
Alignment:
Q  93 agtcttgtagctgttgtttggcctagaatggtcatagtttgactagttttctattcaatgtctgtatttgacacctctttcattaggccctttcttttct 192  Q
    |||||| ||||||| ||||||||  ||||||||||| |||| |||||||| ||  |||||  ||| ||||||||||||||| ||| |  ||||| |||||    
T  788217 agtcttttagctgtggtttggccatgaatggtcataatttgtctagtttttta--caatggttgtctttgacacctctttccttaaggtctttcctttct 788120  T
Q  193 tgggatagacccggtttctcttttcataggttttactctatg 234  Q
    ||| |||||  |  |||||||||| |||| |||||| |||||    
T  788119 tggaatagattcattttctctttttatagattttacactatg 788078  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 788336 - 788265
Alignment:
Q  9 atgaggacccgtgcccaaaagagtacctccaaagccgccttgacaaatacagaa-aattggtccagttgcaa 79  Q
    |||||||| |||||||||||| || |||||||||||||||||||| ||| |||| ||||||| || ||||||    
T  788336 atgaggactcgtgcccaaaagggttcctccaaagccgccttgacatatatagaataattggttcaattgcaa 788265  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 32278775 - 32278714
Alignment:
Q  1 cagccgaaatgaggacccgtgcccaaaagagtacctccaaagccgccttgacaaatacagaa 62  Q
    |||||| ||||| ||  ||| |||||||| ||||||||||||||||||||||| ||||||||    
T  32278775 cagccggaatgaagattcgttcccaaaagggtacctccaaagccgccttgacagatacagaa 32278714  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 36868515 - 36868583
Alignment:
Q  159 tttgacacctctttcattaggccctttcttttcttgggatagacccggtttctcttttcataggttttac 228  Q
    |||||||||| |||| ||||| | |||| |||||||||||||| ||| ||| ||||||||||||| ||||    
T  36868515 tttgacacctttttc-ttaggtcttttcctttcttgggatagatccgatttttcttttcataggtcttac 36868583  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 3801149 - 3801296
Alignment:
Q  95 tcttgtagctgttgtttggcctagaatggtcatagtttgactagttttctattcaatgtctgtatttgacacctctttcattaggccctttcttttcttg 194  Q
    |||| |||||||||||||||| |||||||||||| |||||| |||||| | |   | |  ||| ||||||||||||||| ||||| |||| | ||||||     
T  3801149 tcttttagctgttgtttggccaagaatggtcataatttgaccagttttatgtaatacggttgtctttgacacctctttccttaggtccttgcctttctta 3801248  T
Q  195 ggatagacccggtttctcttttcataggttttactctatgtatctctg 242  Q
    ||||||| ||||||||||||||||||||||||| || |||||||||||    
T  3801249 ggatagatccggtttctcttttcataggttttattccatgtatctctg 3801296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 29369348 - 29369407
Alignment:
Q  183 tttcttttcttgggatagacccggtttctcttttcataggttttactctatgtatctctg 242  Q
    |||| ||||||||||| || |||| |||||||||||||||||||||||||||||||||||    
T  29369348 tttcctttcttgggattgatccggattctcttttcataggttttactctatgtatctctg 29369407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 29369161 - 29369232
Alignment:
Q  8 aatgaggacccgtgcccaaaagagtacctccaaagccgccttgacaaatacagaa-aattggtccagttgca 78  Q
    ||||||||||||||||||||||  ||| |||||| |||||||| || |||||||| | |||||||| |||||    
T  29369161 aatgaggacccgtgcccaaaaggatacatccaaatccgccttggcagatacagaatagttggtccaattgca 29369232  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 3949584 - 3949667
Alignment:
Q  159 tttgacacctctttcattaggccctttcttttcttgggatagacccggtttctcttttcataggttttactctatgtatctctg 242  Q
    ||||||||||| ||| ||||| | || | |||||| ||||||| |||||||||||||||||||||||||| |||||| ||||||    
T  3949584 tttgacacctcgttccttaggtcattccctttcttaggatagatccggtttctcttttcataggttttacactatgtgtctctg 3949667  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 5605541 - 5605472
Alignment:
Q  159 tttgacacctctttcattaggccctttcttttcttgggatagacccggtttctcttttcataggttttac 228  Q
    ||||||||||||||| ||||| |||||| |||||| ||||| |||||  || ||||||||||||||||||    
T  5605541 tttgacacctctttctttagggcctttcctttctttggatatacccgacttttcttttcataggttttac 5605472  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25167894 - 25167955
Alignment:
Q  1 cagccgaaatgaggacccgtgcccaaaagagtacctccaaagccgccttgacaaatacagaa 62  Q
    |||||| || |||||| | |||||||||| ||||||||||||||||||||||| ||||||||    
T  25167894 cagccggaaagaggactcatgcccaaaagggtacctccaaagccgccttgacagatacagaa 25167955  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 7492271 - 7492330
Alignment:
Q  183 tttcttttcttgggatagacccggtttctcttttcataggttttactctatgtatctctg 242  Q
    |||| ||||||||||| || |||| ||||||||| |||||||||||||||||||||||||    
T  7492271 tttcctttcttgggattgatccggattctcttttaataggttttactctatgtatctctg 7492330  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 235
Target Start/End: Original strand, 37050195 - 37050326
Alignment:
Q  105 gttgtttggcctagaatggtcatagttt-gactagttttctattcaatgtctgtatttgacacctctttcattaggccctttcttttcttgggatagacc 203  Q
    ||||||||||| || ||||||||| ||| |||||||||| | |||| ||  ||| ||||| ||||| ||| || || | || | ||| |||||||||| |    
T  37050195 gttgtttggccaagtatggtcatacttttgactagttttttgttcattggttgtctttgatacctcgttcctttggacattccctttattgggatagatc 37050294  T
Q  204 cggtttctcttttcataggttttactctatgt 235  Q
    | ||||||||||||||||||||||| ||||||    
T  37050295 cagtttctcttttcataggttttacactatgt 37050326  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 7500322 - 7500381
Alignment:
Q  183 tttcttttcttgggatagacccggtttctcttttcataggttttactctatgtatctctg 242  Q
    |||| ||||||||||| || |||| ||||||||| |||||||||||||||||||| ||||    
T  7500322 tttcctttcttgggattgatccggattctcttttaataggttttactctatgtatttctg 7500381  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37050052 - 37050102
Alignment:
Q  1 cagccgaaatgaggacccgtgcccaaaagagtacctccaaagccgccttga 51  Q
    |||||| ||||||||| |||||||||||| |||||||||||||||| ||||    
T  37050052 cagccggaatgaggactcgtgcccaaaagggtacctccaaagccgctttga 37050102  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 24239912 - 24239870
Alignment:
Q  1 cagccgaaatgaggacccgtgcccaaaagagtacctccaaagc 43  Q
    |||||| |||||||||||||||||||||| ||||||| |||||    
T  24239912 cagccggaatgaggacccgtgcccaaaagggtacctcaaaagc 24239870  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 31092367 - 31092445
Alignment:
Q  1 cagccgaaatgaggacccgtgcccaaaagagtacctccaaagccgccttgacaaatacagaa-aattggtccagttgca 78  Q
    |||||| ||||||||| |||||||||||| |||||||||||| || |||| || |||||||| | |||||||| |||||    
T  31092367 cagccggaatgaggactcgtgcccaaaagggtacctccaaagtcgtcttgccagatacagaatagttggtccatttgca 31092445  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37344670 - 37344728
Alignment:
Q  1 cagccgaaatgaggacccgtgcccaaaagagtacctccaaagccgccttgacaaataca 59  Q
    |||||| ||||||||  |||||||||||| ||| ||||||||||||||||||| |||||    
T  37344670 cagccggaatgaggattcgtgcccaaaagggtatctccaaagccgccttgacatataca 37344728  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 18811774 - 18811713
Alignment:
Q  1 cagccgaaatgaggacccgtgcccaaaagagtacctccaaagccgccttgacaaatacagaa 62  Q
    |||||| |||||||||||||||||||||| |  ||||||||||  |||||||| ||||||||    
T  18811774 cagccggaatgaggacccgtgcccaaaagggctcctccaaagctaccttgacagatacagaa 18811713  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 37344844 - 37344891
Alignment:
Q  188 tttcttgggatagacccggtttctcttttcataggttttactctatgt 235  Q
    |||||||||||||| ||| ||||||||||| |||||||||| ||||||    
T  37344844 tttcttgggatagatccgatttctcttttcgtaggttttacactatgt 37344891  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 31092561 - 31092615
Alignment:
Q  183 tttcttttcttgggatagacccggtttctcttttcataggttttactctatgtat 237  Q
    |||| ||||||||||| || |  | ||||||||||||||||||||||||||||||    
T  31092561 tttcctttcttgggattgatctagattctcttttcataggttttactctatgtat 31092615  T

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Target: scaffold0531 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 10310 - 10352
Alignment:
Q  1 cagccgaaatgaggacccgtgcccaaaagagtacctccaaagc 43  Q
    |||||| |||||||||||||||| ||||||||| |||||||||    
T  10310 cagccggaatgaggacccgtgcctaaaagagtaactccaaagc 10352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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