View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5809_low_2 (Length: 715)
Name: NF5809_low_2
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5809_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 23 - 340
Target Start/End: Complemental strand, 37592517 - 37592200
Alignment:
| Q |
23 |
tagcagcattcattgcagtgtttccaatatatagacactgtcactatcataatcatcaatactactaactaacaaggacctaaaattgtactacgcacac |
122 |
Q |
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| T |
37592517 |
tagcagcattcattgcagtgtttccaatatatagacactgtcactatcataatcatcaatactactaactaacaaggacctaaaattgtactacgcaaac |
37592418 |
T |
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| Q |
123 |
agataggaacgaaaatggaaatcaaagaggaaatggaggatggtaagcagaaaggaatgagagaagcattgataggggaacacaacaaccaacttgtcca |
222 |
Q |
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| T |
37592417 |
agataggaacgaaaatggaaatcaaagaggaaatggaggatggtaagcagaaaggaatgagagaaccattgataggggaacacaacaaccaacttgtcca |
37592318 |
T |
|
| Q |
223 |
tgcaaacaaagatcatcattatccatggatgctttatttcaccacattcattgcagtttgtggttcttatgaatttggtgcttgtgtaagtcttcacttc |
322 |
Q |
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| T |
37592317 |
tgcaaacaaagatcatcattatccatggatgctttatttcaccacattcattgcagtttgtggttcttatgaatttggtgcttgtgtaagtcttcacttc |
37592218 |
T |
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| Q |
323 |
tttctctgtaaatcagca |
340 |
Q |
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|||||||||||||||||| |
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| T |
37592217 |
tttctctgtaaatcagca |
37592200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 394 - 700
Target Start/End: Complemental strand, 37592146 - 37591840
Alignment:
| Q |
394 |
ccagactggatattcatctccagctcaagatgctatcaggagggatcttaatctatctttggaagaggtaagccagtaatcattctctctcatattcttg |
493 |
Q |
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| T |
37592146 |
ccagactgggtattcatctccagctcaagatgctatcaggagggatcttaatctgtctttggaagaggtaagccagtaatcattctctctcatattcttg |
37592047 |
T |
|
| Q |
494 |
aaggaacctaagaattagatggattaattatagtttagggattacttgttatatttctatatatcaaaatggagagaaagtgatagtttagggaccaaat |
593 |
Q |
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| T |
37592046 |
aaggaacctaagaattagatggattaattatagtttagggattacttgttatatttctatatatcaaaatggagagaaagtgatagtttagggaccaaat |
37591947 |
T |
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| Q |
594 |
tcacggttcattcaaaacataggaaattgactgaaaatgattagcatacagttgagctttggctcctgaactattaagcagtttgcagcaagaaattaat |
693 |
Q |
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| T |
37591946 |
tcacggttcattcaaaacataggaaattgactgaaaatgattagcatacagttgagctttggctcctgaactattaagcaatttgcagcaagaaattaat |
37591847 |
T |
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| Q |
694 |
acaatgt |
700 |
Q |
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||||||| |
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| T |
37591846 |
acaatgt |
37591840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 137 - 340
Target Start/End: Original strand, 37461886 - 37462085
Alignment:
| Q |
137 |
atggaaatcaaagaggaaatggaggatggtaagcagaaaggaatgagagaagcattgataggggaacacaacaaccaacttgtccatgcaaacaaagatc |
236 |
Q |
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||||| ||||||||||| |||| | ||| || ||||||||||| |||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
37461886 |
atggatatcaaagaggatgtggaaggtggcaaacagaaaggaataagagaaccattgataggtgaacaaaacaaccaacttgtccatgcaaacaaagatc |
37461985 |
T |
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| Q |
237 |
atcattatccatggatgctttatttcaccacattcattgcagtttgtggttcttatgaatttggtgcttgtgtaagtcttcacttctttctctgtaaatc |
336 |
Q |
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| T |
37461986 |
atcatcatccatggatggtttacttcaccacattcattgcagtttgtggttcttatgaatttggtgcttgtgtaagtctttacttct----ctgtaaatc |
37462081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 399 - 473
Target Start/End: Original strand, 37462214 - 37462288
Alignment:
| Q |
399 |
ctggatattcatctccagctcaagatgctatcaggagggatcttaatctatctttggaagaggtaagccagtaat |
473 |
Q |
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||||||||||||||||| ||||||| ||||| |||| |||||||| ||| ||||||| ||||||||||||||||| |
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| T |
37462214 |
ctggatattcatctccaactcaagaagctattaggaaggatcttagtctgtctttggcagaggtaagccagtaat |
37462288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 594
Target Start/End: Complemental strand, 25492928 - 25492847
Alignment:
| Q |
511 |
gatggattaattatagtttagggattacttgttatatttctatatatcaaaatggagagaaagtgatagtttagggaccaaatt |
594 |
Q |
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||||||||||| |||||||| ||| || ||| || ||||||||| || ||| ||||||||| ||||||||||| |||||||||| |
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| T |
25492928 |
gatggattaataatagtttaaggactaattggtacatttctata-at-aaattggagagaatgtgatagtttaaggaccaaatt |
25492847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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