View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5809_low_24 (Length: 205)
Name: NF5809_low_24
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5809_low_24 |
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| [»] scaffold0536 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 13448251 - 13448067
Alignment:
| Q |
1 |
tagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13448251 |
tagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagctatacaagct |
13448152 |
T |
|
| Q |
101 |
attcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagaccttaaaagattgagag |
185 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13448151 |
attcaagaaggtggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagaccttaaaagattgagag |
13448067 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 13454722 - 13454552
Alignment:
| Q |
1 |
tagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagct |
100 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| |||| ||||||| |
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| T |
13454722 |
tagcatagagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaatatcagggtacgtgctcgagagtttggagaaaaggctacacaagct |
13454623 |
T |
|
| Q |
101 |
attcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagacct |
171 |
Q |
| |
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|||||| |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |
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| T |
13454622 |
attcaaaaaggtggctcatcttataataatttgttggctttgattgatgaacttaaaagattgagaaacct |
13454552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 13440085 - 13439919
Alignment:
| Q |
4 |
catagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctatt |
103 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||| ||||| ||||||||||||||| |||| |||||||||| |
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| T |
13440085 |
catagagaaggctgtgaggagattgatggagaatggtgatgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggctacacaagctatt |
13439986 |
T |
|
| Q |
104 |
caagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagacc |
170 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |
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| T |
13439985 |
caagaaggtggctcgtcttataataatttgttggctttaattgaagaacttaaaagattgagagacc |
13439919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 169
Target Start/End: Complemental strand, 28385219 - 28385054
Alignment:
| Q |
4 |
catagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctatt |
103 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||||| ||||||||||||||||| || | || |||||||||||| ||||| || |||| || |||| || |
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| T |
28385219 |
catagagaaggctatgaggaaattgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgtt |
28385120 |
T |
|
| Q |
104 |
caagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac |
169 |
Q |
| |
|
||||||| || || ||||||||||||||||| ||||| || |||||||||||||||| ||||||| |
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|
| T |
28385119 |
aaagaaggtggttcctcttataataatttgttagctttaatcgacgaacttaaaagattgagagac |
28385054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 12540571 - 12540413
Alignment:
| Q |
3 |
gcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctat |
102 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||||| |||||||||||||||| || |||| ||| |||||| ||||||| || |||| || |||| | |
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| T |
12540571 |
gcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgt |
12540472 |
T |
|
| Q |
103 |
tcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagat |
161 |
Q |
| |
|
||||||||| || || ||| ||||||||||||| ||||||| |||||| ||||||||| |
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|
| T |
12540471 |
tcaagaaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagat |
12540413 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 48965217 - 48965050
Alignment:
| Q |
1 |
tagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagct |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||| || || || | ||||| ||||||||||||||| |||| || ||| |
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| T |
48965217 |
tagcatagagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaaattagaagtcgtgctcaagagtttggagaaaaggctagacgagcc |
48965118 |
T |
|
| Q |
101 |
attcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagaga |
168 |
Q |
| |
|
||||||||||| ||||||||| |||| |||||||| || |||||||| || || ||||||| |||||| |
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| T |
48965117 |
attcaagaaggtggctcgtctcataagaatttgttagccttgattgatgatctcaaaagattgagaga |
48965050 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 5 - 169
Target Start/End: Complemental strand, 48961175 - 48961011
Alignment:
| Q |
5 |
atagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattc |
104 |
Q |
| |
|
||||||||||| || || | ||| |||||||||||||||||||| ||| |||| || | | ||||||||||||||| || || |||||| |||| ||| |
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| T |
48961175 |
atagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttc |
48961076 |
T |
|
| Q |
105 |
aagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac |
169 |
Q |
| |
|
||| ||| ||||| ||| ||||||||||||||||||| ||||| || |||||||||| ||||||| |
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|
| T |
48961075 |
aagtaggcggctcatctcataataatttgttggctttaattgatgatcttaaaagattgagagac |
48961011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 4 - 169
Target Start/End: Complemental strand, 48967343 - 48967178
Alignment:
| Q |
4 |
catagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctatt |
103 |
Q |
| |
|
||||||||| ||| |||| |||||||||||| || ||||||||||| || ||||| | || ||||||||| ||||||||||| |||| || ||| || |
|
|
| T |
48967343 |
catagagaaagctataagaagattgatggacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctacacgagcactt |
48967244 |
T |
|
| Q |
104 |
caagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac |
169 |
Q |
| |
|
|||||||| |||| ||||||||||||||| | ||||||||||| || ||||||||| ||||||| |
|
|
| T |
48967243 |
caagaaggtggcttgtcttataataatttacttgctttgattgatgatcttaaaagaatgagagac |
48967178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 48958028 - 48957876
Alignment:
| Q |
5 |
atagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattc |
104 |
Q |
| |
|
||||| |||||||| | |||||||||||||||||||||||||||||| | |||| | | ||||| |||||| |||||||| |||| || |||| ||| |
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|
| T |
48958028 |
atagaaaaggctgtgaagagattgatggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacacgagctgttc |
48957929 |
T |
|
| Q |
105 |
aagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaa |
157 |
Q |
| |
|
||||||| || || ||| |||| ||||||||| |||||||||| || |||||| |
|
|
| T |
48957928 |
aagaaggtggatcatctcataacaatttgttgtctttgattgatgatcttaaa |
48957876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 48912659 - 48912746
Alignment:
| Q |
24 |
gattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagg |
111 |
Q |
| |
|
||||||||||| |||||||||||||||| || ||||| | |||||||||||||||||| || ||||||| ||| || ||| ||||||| |
|
|
| T |
48912659 |
gattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaagg |
48912746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 5 - 170
Target Start/End: Original strand, 12641776 - 12641941
Alignment:
| Q |
5 |
atagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattc |
104 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| ||||||||||||| | | ||||| | || ||||| ||||||||| |||| |||| ||| ||| || |
|
|
| T |
12641776 |
atagagaaagctgtgaggagattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgctgttg |
12641875 |
T |
|
| Q |
105 |
aagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagacc |
170 |
Q |
| |
|
||||||| || |||||| |||| |||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
12641876 |
aagaaggcgggtcgtctcataacaatttgttggctttgattaacgatcttaaaagatcgagagacc |
12641941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 3417821 - 3417975
Alignment:
| Q |
4 |
catagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctatt |
103 |
Q |
| |
|
|||||||||||| | ||||||||||||||| || ||||||| |||||| ||| || |||| |||||||||| ||||||| || |||| || ||||||| |
|
|
| T |
3417821 |
catagagaaggcaatgaggagattgatggacagtagtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggctaaacgagctatt |
3417920 |
T |
|
| Q |
104 |
caagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaa |
158 |
Q |
| |
|
|||||||| || || || || |||||||||| ||||||| ||||||||||||| |
|
|
| T |
3417921 |
caagaaggtggttcctcacatcataatttgttaactttgatcgacgaacttaaaa |
3417975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 6809 - 6852
Alignment:
| Q |
8 |
gagaaggctgtaaggagattgatggacggtggtgatgaagctga |
51 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
6809 |
gagaaggctgtgaggagattgatggatggtggtgacgaagctga |
6852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 12590460 - 12590594
Alignment:
| Q |
1 |
tagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagct |
100 |
Q |
| |
|
||||||| |||| ||||| || ||||||||||| ||||| ||||||||| | ||||| | || | || |||||| || |||||||||| || |||| |
|
|
| T |
12590460 |
tagcataaagaatgctgtgagaagattgatggatggtggcattgaagctgaggaaatcagacgacgtagtcaagagttaggggaaaaagctagactagct |
12590559 |
T |
|
| Q |
101 |
attcaagaagggggctcgtcttataataatttgtt |
135 |
Q |
| |
|
||||| |||| ||||| ||| ||||||||||||| |
|
|
| T |
12590560 |
gttcaacaaggtggctcctctaataataatttgtt |
12590594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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