View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5809_low_4 (Length: 438)

Name: NF5809_low_4
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5809_low_4
NF5809_low_4
[»] chr7 (11 HSPs)
chr7 (11-421)||(7631228-7631638)
chr7 (157-294)||(7638024-7638158)
chr7 (82-157)||(23578097-23578172)
chr7 (44-156)||(11776403-11776514)
chr7 (50-147)||(2463445-2463541)
chr7 (76-129)||(36675211-36675264)
chr7 (49-145)||(27938762-27938857)
chr7 (44-148)||(33730108-33730211)
chr7 (52-109)||(7631020-7631076)
chr7 (84-125)||(8547326-8547367)
chr7 (47-147)||(21416200-21416299)
[»] chr2 (8 HSPs)
chr2 (44-157)||(19548134-19548246)
chr2 (69-157)||(40053444-40053531)
chr2 (76-161)||(28226323-28226408)
chr2 (44-160)||(19547856-19547972)
chr2 (44-104)||(10066574-10066633)
chr2 (79-147)||(39334462-39334530)
chr2 (76-147)||(13792581-13792652)
chr2 (44-114)||(40053195-40053264)
[»] chr8 (6 HSPs)
chr8 (44-158)||(2954564-2954677)
chr8 (44-147)||(5981498-5981600)
chr8 (76-157)||(2954312-2954393)
chr8 (97-156)||(23125199-23125258)
chr8 (44-153)||(5072975-5073084)
chr8 (44-112)||(5981790-5981856)
[»] chr6 (4 HSPs)
chr6 (51-147)||(7301647-7301742)
chr6 (51-149)||(15092057-15092154)
chr6 (83-129)||(11638107-11638153)
chr6 (49-141)||(28940818-28940911)
[»] chr5 (5 HSPs)
chr5 (90-158)||(26420849-26420917)
chr5 (44-105)||(27856171-27856231)
chr5 (88-145)||(21633404-21633461)
chr5 (88-145)||(21641651-21641708)
chr5 (44-105)||(28296083-28296143)
[»] chr3 (9 HSPs)
chr3 (44-147)||(43978631-43978733)
chr3 (44-158)||(43481578-43481690)
chr3 (76-161)||(53595946-53596031)
chr3 (76-161)||(53596261-53596346)
chr3 (47-147)||(43978928-43979027)
chr3 (44-112)||(40195876-40195943)
chr3 (76-147)||(16143438-16143509)
chr3 (44-157)||(32201029-32201141)
chr3 (122-158)||(28978989-28979025)
[»] chr1 (11 HSPs)
chr1 (51-157)||(43834485-43834590)
chr1 (44-157)||(11199913-11200025)
chr1 (78-156)||(8179758-8179836)
chr1 (44-153)||(38637504-38637612)
chr1 (44-112)||(6182407-6182474)
chr1 (44-147)||(4392248-4392350)
chr1 (44-147)||(15327856-15327958)
chr1 (78-156)||(5821717-5821795)
chr1 (44-161)||(26231711-26231825)
chr1 (44-105)||(50391947-50392007)
chr1 (51-147)||(12466283-12466378)
[»] chr4 (6 HSPs)
chr4 (44-145)||(47680623-47680723)
chr4 (76-113)||(10396450-10396487)
chr4 (44-113)||(11307635-11307703)
chr4 (47-146)||(11197227-11197325)
chr4 (44-157)||(8445845-8445957)
chr4 (44-112)||(51681284-51681352)
[»] scaffold0256 (1 HSPs)
scaffold0256 (52-147)||(13369-13463)
[»] scaffold0548 (1 HSPs)
scaffold0548 (44-106)||(4124-4185)


Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Original strand, 7631228 - 7631638
Alignment:
Q  11 cagagagcgtcgggagcggcaatgtgccaaacgtccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctcca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7631228 cagagagcgtcgggagcggcaatgtgccaaacgtccacccaaaagcttaagccattaggtatatggggtctcctctcttatatatccaacattttctcca 7631327  T
Q  111 ttttcagtagatgtgggacttaactactcacacttgaaacccaacaaatattccaattttacggaccaaatcaagtatttacgaaaatttcctctttttc 210  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||  || ||||||| |||||||||||||||||||| ||||||||||||||||||    
T  7631328 ttttcagtcgatgtgggacttaactactcacacttgaaacccaacaaaagttacaattttccggaccaaatcaagtatttatgaaaatttcctctttttc 7631427  T
Q  211 tcggcacgttggtgtatgatgaaagtgagaattaaattttttaaaataatttgtcaccggcctgtttgtgttgttgatttcaccaatttcaccattttga 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7631428 tcggcacgttggtgtatgatgaaagtgagaattaaattttttaaaataatttgtcaccggtctgtttgtgttgttgatttcaccaatttcaccattttga 7631527  T
Q  311 tatttactatgtcggtcagtgtatcatcgcatgttttatgtatcatttgtagccatactttttctgtatagatcatgggaggcatattgtcatctccagc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7631528 tatttactatgtcggtcagtgtatcatcgcatgttttatgtatcatttgtagccatactttttctgtatagatcatgggaggcatattgtcatctccagc 7631627  T
Q  411 aggcttacata 421  Q
    |||||||||||    
T  7631628 aggcttacata 7631638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 294
Target Start/End: Original strand, 7638024 - 7638158
Alignment:
Q  157 aatattccaattttacggaccaaatcaagtatttacgaaaatttcctctttttctcggcacgttggtgtatgatgaaagtgagaattaaattttttaaaa 256  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||  |||||||||||||||| ||||| | ||||   ||||| ||||||||||||  |||    
T  7638024 aatattacaattttactgaccaaatcaagtatttactaaaattatctctttttctcggcacattggtctgtgat-tgagtgaaaattaaattttt--aaa 7638120  T
Q  257 taatttgtcaccggcctgtttgtgttgttgatttcacc 294  Q
    |||||||||||| ||| |||||||| ||  ||||||||    
T  7638121 taatttgtcaccagccagtttgtgtcgtcaatttcacc 7638158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 23578097 - 23578172
Alignment:
Q  82 cctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaacccaacaa 157  Q
    ||||||||||||||||||| ||||||||||||  | | ||||||||||||||  |||||||| |||||||||||||    
T  23578097 cctctcttatatatccaacgttttctccatttctactcgatgtgggacttaatcactcacacatgaaacccaacaa 23578172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 11776403 - 11776514
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 143  Q
    ||||||||||||||||||  |||| ||||||||| || |||||||||||||| |||  ||| |||||||   ||| |||||||||| |||  ||||||||    
T  11776403 tccacccaaaaccttaaggtattatgtatatggg-tcccctctcttatatattcaatgtttcctccattcctagttgatgtgggacataatcactcacac 11776501  T
Q  144 ttgaaacccaaca 156  Q
    ||||| |||||||    
T  11776502 ttgaatcccaaca 11776514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 2463541 - 2463445
Alignment:
Q  50 caaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttga 147  Q
    |||||||||||| ||| ||||||||| | || |||||||||||||||||| |||| ||||||||  |    ||||||||| ||| |||||||||||||    
T  2463541 caaaaccttaaggcatcaggtatatgtg-tcccctctcttatatatccaatatttcctccatttctaaccaatgtgggacataattactcacacttga 2463445  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 36675264 - 36675211
Alignment:
Q  76 gggtctcctctcttatatatccaacattttctccattttcagtagatgtgggac 129  Q
    ||||||| ||||||||||||||||| ||||||||||||  ||| ||||||||||    
T  36675264 gggtctcatctcttatatatccaacgttttctccatttatagtcgatgtgggac 36675211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 27938857 - 27938762
Alignment:
Q  49 ccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacactt 145  Q
    ||||||||||||| | ||||||||||| | |||||| |||||||||||||||  || ||| ||||||||  ||||| |||| |||  ||||||||||    
T  27938857 ccaaaaccttaaggctttaggtatatgag-tctcctttcttatatatccaacgattcctcaattttcagccgatgtcggacataatcactcacactt 27938762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 33730108 - 33730211
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 143  Q
    |||| ||||||||||||  |||||| | |||||| || |||||||| ||||||||||||||   |||||   ||| ||||||||||||||| |||| |||    
T  33730108 tccatccaaaaccttaatgcattagctctatggg-tcacctctcttttatatccaacatttaacccattcatagtcgatgtgggacttaaccactcgcac 33730206  T
Q  144 ttgaa 148  Q
    |||||    
T  33730207 ttgaa 33730211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 7631076 - 7631020
Alignment:
Q  52 aaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctcc 109  Q
    |||||||||| ||| ||||| ||||| |||| |||||||||||||| |||||||||||    
T  7631076 aaaccttaaggcatcaggtacatggg-tctcatctcttatatatccgacattttctcc 7631020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 8547326 - 8547367
Alignment:
Q  84 tctcttatatatccaacattttctccattttcagtagatgtg 125  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||    
T  8547326 tctctgatatatccaacattttctccatttttagttgatgtg 8547367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 21416200 - 21416299
Alignment:
Q  47 acccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttg 146  Q
    |||||||||| |||| || | ||| |||||| |||||||||||||||||||||  |||  ||||| |  ||| |||||||||| |||  |||||||||||    
T  21416200 acccaaaaccctaaggcaatgggtttatggg-tctcctctcttatatatccaatttttgttccatgtctagttgatgtgggacataatcactcacacttg 21416298  T

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Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 19548246 - 19548134
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 143  Q
    |||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||| ||| ||||  ||| |||||||||| |||| |||||| |    
T  19548246 tccacccaaaaccttaagacattagatatatggg-tctcctctcttatatatccaacatttcctctatttctagtcgatgtgggacataaccactcacgc 19548148  T
Q  144 ttgaaacccaacaa 157  Q
    ||||||||||||||    
T  19548147 ttgaaacccaacaa 19548134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 157
Target Start/End: Complemental strand, 40053531 - 40053444
Alignment:
Q  69 gtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaacccaacaa 157  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||| ||  |||||||||| ||| || ||||||||||  ||||||||    
T  40053531 gtatatgggttc-cctctcttatatatccaacatttcctccatttttagccgatgtgggacataattattcacacttgattcccaacaa 40053444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 28226408 - 28226323
Alignment:
Q  76 gggtctcctctcttatatatccaacattttctccattttcagtagatgtgggac-ttaactactcacacttgaaacccaacaaatat 161  Q
    ||||||||||||||||||||||||| ||| ||||||||  ||| |||||||||| ||||| ||||||||||||   |||||||||||    
T  28226408 gggtctcctctcttatatatccaacgtttcctccatttctagtcgatgtgggacattaac-actcacacttgatttccaacaaatat 28226323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 160
Target Start/End: Complemental strand, 19547972 - 19547856
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcc-tctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcaca 142  Q
    ||||| |||||||||||  ||||| |||||| || ||||| |||||||||||||||||||||  |||||||  ||| ||| |  ||| ||| ||||||||    
T  19547972 tccacacaaaaccttaaagcattatgtatatagg-tctccctctcttatatatccaacatttcttccatttctagtcgatataagacataattactcaca 19547874  T
Q  143 cttgaaacccaacaaata 160  Q
    ||||||||| ||||||||    
T  19547873 cttgaaacctaacaaata 19547856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 10066633 - 10066574
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattt 104  Q
    ||||||||||| |||||| |||||||||||| || |||||| |||||||||||||||||||    
T  10066633 tccacccaaaatcttaaggcattaggtatat-ggatctcctatcttatatatccaacattt 10066574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 39334462 - 39334530
Alignment:
Q  79 tctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttga 147  Q
    |||||||| || |||||||||||||| ||| ||||| ||||||||| ||||||||  ||||||||||||    
T  39334462 tctcctcttttttatatccaacatttcctcgatttttagtagatgtaggacttaatcactcacacttga 39334530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 13792581 - 13792652
Alignment:
Q  76 gggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttga 147  Q
    ||||||||||||||||||||| || |||| ||||||||  ||| |||||||||| |||  ||||||||||||    
T  13792581 gggtctcctctcttatatatcaaatatttcctccatttctagttgatgtgggacataatcactcacacttga 13792652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 40053264 - 40053195
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccatttt 114  Q
    |||||| ||||||||||| ||| | ||||||||| || ||||||||||| ||| |||||||||||||||||    
T  40053264 tccacctaaaaccttaagacatcatgtatatggg-tcccctctcttataaatctaacattttctccatttt 40053195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 2954564 - 2954677
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 143  Q
    |||||| ||||||||||| ||| ||| ||||||| ||| ||||||||||||||||||||||||||||||   |||  ||||||||| |||  ||||||||    
T  2954564 tccaccgaaaaccttaaggcatcaggcatatggg-tcttctctcttatatatccaacattttctccattcctagtctatgtgggacataatcactcacac 2954662  T
Q  144 ttgaaacccaacaaa 158  Q
    |||||||||||||||    
T  2954663 ttgaaacccaacaaa 2954677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 5981498 - 5981600
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 143  Q
    |||||||||||||||||| ||| ||||| ||||| || ||||||||||||||||||| |||||||||||   ||| |||||||||| |||  ||||||||    
T  5981498 tccacccaaaaccttaaggcatcaggtacatggg-tcccctctcttatatatccaacgttttctccattcctagtcgatgtgggacataatcactcacac 5981596  T
Q  144 ttga 147  Q
    ||||    
T  5981597 ttga 5981600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 2954312 - 2954393
Alignment:
Q  76 gggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaacccaacaa 157  Q
    |||||||||||||||||||||||||||||||||||||   ||| |||||||||  |||  ||||||||||||||| ||||||    
T  2954312 gggtctcctctcttatatatccaacattttctccattcctagtcgatgtgggaaataatcactcacacttgaaactcaacaa 2954393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 23125258 - 23125199
Alignment:
Q  97 caacattttctccattttcagtagatgtgggacttaactactcacacttgaaacccaaca 156  Q
    ||||||||| |||||||  ||| ||||| ||||||||| |||||||||||||||||||||    
T  23125258 caacattttatccatttatagttgatgtaggacttaaccactcacacttgaaacccaaca 23125199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 153
Target Start/End: Complemental strand, 5073084 - 5072975
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaaca-ttttctccattttcagtagatgtgggacttaactactcaca 142  Q
    |||||||||||||||||| ||||| ||||||| |  | |||||||||||||||||||| ||||  |||||   |   |||||| || |||||||||||||    
T  5073084 tccacccaaaaccttaaggcattacgtatatgaga-cgcctctcttatatatccaacatttttacccattcataaccgatgtgagatttaactactcaca 5072986  T
Q  143 cttgaaaccca 153  Q
    |||||||||||    
T  5072985 cttgaaaccca 5072975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 5981790 - 5981856
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccatt 112  Q
    |||||||||||||||||| || | ||| |||||| || ||||||||||||||||||| ||| |||||||    
T  5981790 tccacccaaaaccttaaggcaat-ggtttatggg-tcccctctcttatatatccaacgtttcctccatt 5981856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 7301647 - 7301742
Alignment:
Q  51 aaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttga 147  Q
    |||||||||||  |||||||||||| | || ||||| ||||||||| ||||||||||||||||| ||| |||||||||| ||| |||||||||||||    
T  7301647 aaaaccttaagatattaggtatatgtg-tcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttga 7301742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 149
Target Start/End: Complemental strand, 15092154 - 15092057
Alignment:
Q  51 aaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaa 149  Q
    ||||||||||  ||| ||||||||||  || |||||| |||||||||||||||||||| ||||  | | ||||||| | ||||| ||||||||||||||    
T  15092154 aaaaccttaaagcatcaggtatatgga-tcccctctcgtatatatccaacattttctcaatttctaatcgatgtggtatttaaccactcacacttgaaa 15092057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 11638107 - 11638153
Alignment:
Q  83 ctctcttatatatccaacattttctccattttcagtagatgtgggac 129  Q
    ||||||||||||||||| |||||||||||||  ||| ||||||||||    
T  11638107 ctctcttatatatccaatattttctccatttctagttgatgtgggac 11638153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 28940818 - 28940911
Alignment:
Q  49 ccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaaca-ttttctccattttc-agtagatgtgggacttaactactcac 141  Q
    |||||| |||||| ||||||||||| | | |||| |||||||||| ||||||| |||||| ||||||| ||| |||||| ||||||||| |||||    
T  28940818 ccaaaatcttaagacattaggtatacgag-tctcttctcttatatgtccaacatttttcttcattttctagtcgatgtgagacttaactgctcac 28940911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 26420849 - 26420917
Alignment:
Q  90 atatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaacccaacaaa 158  Q
    ||||||||||||||| ||||||||  ||| |||||||||||||||||||||||||||||  ||||||||    
T  26420849 atatatccaacatttcctccatttctagtcgatgtgggacttaactactcacacttgaattccaacaaa 26420917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 27856231 - 27856171
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacatttt 105  Q
    |||||||||||| ||||| ||||||||||||| |  | ||||||||||||||||||||||||    
T  27856231 tccacccaaaactttaaggcattaggtatatgagc-cacctctcttatatatccaacatttt 27856171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 21633404 - 21633461
Alignment:
Q  88 ttatatatccaacattttctccattttcagtagatgtgggacttaactactcacactt 145  Q
    |||||||||||| |||||||||||||| | | ||||||| ||||||  ||||||||||    
T  21633404 ttatatatccaatattttctccatttttaattgatgtggaacttaaacactcacactt 21633461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 21641651 - 21641708
Alignment:
Q  88 ttatatatccaacattttctccattttcagtagatgtgggacttaactactcacactt 145  Q
    |||||||||||| |||||||||||||| | | ||||||| ||||||  ||||||||||    
T  21641651 ttatatatccaatattttctccatttttaattgatgtggaacttaaacactcacactt 21641708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 28296083 - 28296143
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacatttt 105  Q
    ||||||||||||||||||  ||||||||||| ||||| ||||||||||| || ||| |||||    
T  28296083 tccacccaaaaccttaagagattaggtatat-gggtcacctctcttatacattcaatatttt 28296143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 43978631 - 43978733
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 143  Q
    |||||||||||||||||| || |||||||||| | |||||||||||||||||||||  ||| |||||||   ||| |||||||||| |||  ||||||||    
T  43978631 tccacccaaaaccttaaggcaataggtatatgag-tctcctctcttatatatccaatgtttcctccattcctagtcgatgtgggacataatcactcacac 43978729  T
Q  144 ttga 147  Q
    ||||    
T  43978730 ttga 43978733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 43481690 - 43481578
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 143  Q
    |||||| |||| |||||  ||| ||||||||||| || ||||||||||||||||||||||| |||||||   ||| |||||| ||| |||  ||||||||    
T  43481690 tccacctaaaatcttaatgcatcaggtatatggg-tcccctctcttatatatccaacatttcctccattcctagtcgatgtgagacataatcactcacac 43481592  T
Q  144 ttgaaacccaacaaa 158  Q
    ||| |||||||||||    
T  43481591 ttg-aacccaacaaa 43481578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 53596031 - 53595946
Alignment:
Q  76 gggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaacccaacaaatat 161  Q
    ||||||||||||||||||||||||||||||||| ||||  |||  ||||||||| |||  |||| |||||||   |||||||||||    
T  53596031 gggtctcctctcttatatatccaacattttctctatttctagtcaatgtgggacataatcactcgcacttgatttccaacaaatat 53595946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 53596346 - 53596261
Alignment:
Q  76 gggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaacccaacaaatat 161  Q
    ||||||||||||||||||||||||||||||||| ||||  |||  ||||||||| |||  |||| |||||||   |||||||||||    
T  53596346 gggtctcctctcttatatatccaacattttctctatttctagtcaatgtgggacataatcactcgcacttgatttccaacaaatat 53596261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 43978928 - 43979027
Alignment:
Q  47 acccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttg 146  Q
    ||||||||||||||| || |||||||| |||| ||||||||||||| | ||||| ||| ||||||| | ||| |||||||||| |||  ||||||| |||    
T  43978928 acccaaaaccttaaggcaataggtatacgggg-ctcctctcttatacacccaacgtttcctccattcttagtcgatgtgggacataatcactcacatttg 43979026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 40195876 - 40195943
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccatt 112  Q
    ||||||||||||||  || ||| | ||||||||| |||||||||||||||||||||| ||| |||||||    
T  40195876 tccacccaaaacctctaggcatcatgtatatggg-tctcctctcttatatatccaacgtttcctccatt 40195943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 16143509 - 16143438
Alignment:
Q  76 gggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttga 147  Q
    ||||||| ||||||||||||||||||||| ||||||||  || |||||||| || | |  ||||||||||||    
T  16143509 gggtctcgtctcttatatatccaacatttgctccatttctagcagatgtggaacattatcactcacacttga 16143438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 32201141 - 32201029
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 143  Q
    ||||||||||| |||||| ||| | ||||||  | ||||||||||| |||||| ||||||| || |||||| ||| |||||| ||| |||  |||||||     
T  32201141 tccacccaaaatcttaaggcatcaagtatatatg-tctcctctcttgtatatcaaacatttccttcatttttagtcgatgtgagacataatcactcacat 32201043  T
Q  144 ttgaaacccaacaa 157  Q
    ||||  ||||||||    
T  32201042 ttgattcccaacaa 32201029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 28979025 - 28978989
Alignment:
Q  122 tgtgggacttaactactcacacttgaaacccaacaaa 158  Q
    |||| |||||||| |||||||||||||||||||||||    
T  28979025 tgtgagacttaaccactcacacttgaaacccaacaaa 28978989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 43834590 - 43834485
Alignment:
Q  51 aaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaac 150  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||| ||||||||  |||||| | ||  |||||| ||  |||  |||||||||||||||    
T  43834590 aaaaccttaagacattaggtatat-gggtcccctctcttatatattcaacatttcatccattcttagccgatgtgagatataatcactcacacttgaaac 43834492  T
Q  151 ccaacaa 157  Q
    |||||||    
T  43834491 ccaacaa 43834485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 11200025 - 11199913
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 143  Q
    |||||||||||||||||| ||||||| ||||| | || ||||||||||||||||||||||||  | |||   ||   ||||| |||||||| ||||||||    
T  11200025 tccacccaaaaccttaaggcattaggcatatgag-tcacctctcttatatatccaacattttacctattcataggcaatgtgagacttaaccactcacac 11199927  T
Q  144 ttgaaacccaacaa 157  Q
    || |||||||||||    
T  11199926 ttaaaacccaacaa 11199913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 8179758 - 8179836
Alignment:
Q  78 gtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaacccaaca 156  Q
    ||||||| ||||||||||| ||||||||||||||||| | | |||||| |||||||  ||| |||||  ||||||||||    
T  8179758 gtctcctatcttatatatcaaacattttctccattttaaatcgatgtgtgacttaatcactaacactcaaaacccaaca 8179836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 153
Target Start/End: Complemental strand, 38637612 - 38637504
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 143  Q
    ||||||||| |||||||| ||||||||||||  |||| |||| |||||||  |||||||||| |||||||  ||   || ||||||||||| || |||||    
T  38637612 tccacccaataccttaaggcattaggtatat-aggtcacctcacttatatggccaacattttatccatttataggcaatttgggacttaaccacccacac 38637514  T
Q  144 ttgaaaccca 153  Q
    || |||||||    
T  38637513 ttaaaaccca 38637504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 6182474 - 6182407
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccatt 112  Q
    ||||||||||| |||||| ||| |||||||| |  ||| ||||| ||||||||||||||||||||||||    
T  6182474 tccacccaaaatcttaaggcatcaggtatataga-tcttctctcatatatatccaacattttctccatt 6182407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 4392248 - 4392350
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 143  Q
    |||| |||||| |||||| ||| ||||||||||| |||||||| ||||||||||||  ||| |||||||   ||| |||||| ||| |||  ||||||||    
T  4392248 tccatccaaaatcttaaggcatcaggtatatggg-tctcctctgttatatatccaatgtttcctccattcatagtcgatgtgagacataatcactcacac 4392346  T
Q  144 ttga 147  Q
    ||||    
T  4392347 ttga 4392350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 15327958 - 15327856
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 143  Q
    |||||||||||||| ||| ||  ||||||||||| || ||||||||||||||| ||| ||| |||||||   ||| |||||| ||| |||  ||||||||    
T  15327958 tccacccaaaacctcaagacaacaggtatatggg-tcccctctcttatatatctaacgtttcctccattcctagtcgatgtgagacataatcactcacac 15327860  T
Q  144 ttga 147  Q
    ||||    
T  15327859 ttga 15327856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 5821795 - 5821717
Alignment:
Q  78 gtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaacccaaca 156  Q
    |||| |||||||||||||||||  ||| ||||||| ||  | |||||| ||| |||  |||||||||||||||||||||    
T  5821795 gtcttctctcttatatatccaatgtttcctccattctcgatcgatgtgagacataatcactcacacttgaaacccaaca 5821717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 26231711 - 26231825
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 143  Q
    ||||||||||||||||||  | | ||||||| ||||| ||||||||||||||  ||||||| ||| |||   | | |||||||||| ||| |||| ||||    
T  26231711 tccacccaaaaccttaaggtaattggtatat-gggtcccctctcttatatat--aacatttcctcaattcctaatcgatgtgggacataattacttacac 26231807  T
Q  144 ttgaaacccaacaaatat 161  Q
    || |||||||||| ||||    
T  26231808 ttaaaacccaacatatat 26231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 50391947 - 50392007
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacatttt 105  Q
    |||| ||||||||||||| |||||||||||| | ||| | | ||||||||||||||||||||    
T  50391947 tccatccaaaaccttaagacattaggtatat-gagtcacatatcttatatatccaacatttt 50392007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 12466378 - 12466283
Alignment:
Q  51 aaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttga 147  Q
    ||||||||||| ||||| ||||||  || |  ||||| |||||||||||| ||||||||||||  ||| |||||||||| |||  ||| ||||||||    
T  12466378 aaaaccttaaggcattaagtatat-aggcccactctcgtatatatccaacgttttctccatttctagttgatgtgggacataatcacttacacttga 12466283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 47680723 - 47680623
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 143  Q
    |||||||||||||||||| ||| |||||||| |||||||||||| ||||||| |||  ||| ||||||||  | | |||||||||| |||  ||||||||    
T  47680723 tccacccaaaaccttaaggcatcaggtatat-gggtctcctctcatatatattcaatgtttcctccatttataatcgatgtgggacataatcactcacac 47680625  T
Q  144 tt 145  Q
    ||    
T  47680624 tt 47680623  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 10396487 - 10396450
Alignment:
Q  76 gggtctcctctcttatatatccaacattttctccattt 113  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  10396487 gggtctcctctcttatatatccaacatttcctccattt 10396450  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 11307635 - 11307703
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattt 113  Q
    |||||||||||| ||||| ||| ||||||||| | || ||||||| ||||||||||||||| ||||||||    
T  11307635 tccacccaaaacattaagacatgaggtatatgtg-tcccctctctcatatatccaacatttcctccattt 11307703  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 11197325 - 11197227
Alignment:
Q  47 acccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttg 146  Q
    |||||||||| |||| || | ||| |||||| |||||||||||||||||||||| ||| ||||||||  ||| |||||| | | |||  |||||||||||    
T  11197325 acccaaaaccctaaggcaatgggtttatggg-tctcctctcttatatatccaacgtttcctccatttctagtcgatgtgaggcataatcactcacacttg 11197227  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 8445957 - 8445845
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 143  Q
    |||||| ||||||||||| ||| | ||||||| |  ||| ||||||||||||||||||||| || |||| |  |  |||||||||| |||  ||| | ||    
T  8445957 tccacctaaaaccttaaggcatcatgtatatgtgtcctc-tctcttatatatccaacatttccttcattgtgtgccgatgtgggacataatcacttagac 8445859  T
Q  144 ttgaaacccaacaa 157  Q
    ||||||||||||||    
T  8445858 ttgaaacccaacaa 8445845  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 51681352 - 51681284
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccatt 112  Q
    ||||||||||||||||||  ||  ||||||||||  | ||| ||||||||||||||  |||||||||||    
T  51681352 tccacccaaaaccttaaggtatatggtatatgggtccccctttcttatatatccaatgttttctccatt 51681284  T

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Target: scaffold0256 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 13463 - 13369
Alignment:
Q  52 aaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttga 147  Q
    |||||||||  |||||||||||| ||||| |||||||| || ||| ||||||| ||||||||  ||| |||||| |||||||  | ||||||||||    
T  13463 aaaccttaaagcattaggtatat-gggtcacctctcttttaaatctaacatttcctccatttctagtcgatgtgtgacttaatcattcacacttga 13369  T

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Target: scaffold0548 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 4124 - 4185
Alignment:
Q  44 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttc 106  Q
    |||||||||||| ||||| ||| ||||||||| | || ||||||| |||||||||||||||||    
T  4124 tccacccaaaacattaagacatgaggtatatgtg-tcccctctctcatatatccaacattttc 4185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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