View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5809_low_5 (Length: 402)

Name: NF5809_low_5
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5809_low_5
NF5809_low_5
[»] chr7 (5 HSPs)
chr7 (1-384)||(4646391-4646757)
chr7 (157-374)||(41598510-41598727)
chr7 (217-374)||(17244982-17245139)
chr7 (1-140)||(41600999-41601134)
chr7 (241-380)||(3207540-3207679)
[»] chr3 (10 HSPs)
chr3 (157-374)||(31932796-31933013)
chr3 (157-374)||(31663383-31663600)
chr3 (192-374)||(31952130-31952312)
chr3 (157-384)||(8563466-8563693)
chr3 (238-380)||(6008559-6008701)
chr3 (238-380)||(17784288-17784430)
chr3 (238-380)||(19085807-19085949)
chr3 (238-380)||(19092915-19093057)
chr3 (220-374)||(49640081-49640235)
chr3 (1-146)||(31808721-31808863)
[»] chr2 (3 HSPs)
chr2 (157-374)||(25102099-25102316)
chr2 (303-344)||(20658733-20658774)
chr2 (259-328)||(45011398-45011467)
[»] scaffold0252 (1 HSPs)
scaffold0252 (235-374)||(5382-5521)
[»] chr5 (3 HSPs)
chr5 (1-146)||(16084630-16084772)
chr5 (313-380)||(22289850-22289917)
chr5 (271-380)||(28244125-28244234)
[»] chr4 (2 HSPs)
chr4 (238-380)||(30856836-30856978)
chr4 (304-372)||(55225088-55225156)
[»] chr8 (5 HSPs)
chr8 (217-374)||(29338397-29338554)
chr8 (313-380)||(14503195-14503262)
chr8 (304-371)||(15993009-15993076)
chr8 (1-95)||(27978356-27978447)
chr8 (1-95)||(28035625-28035716)
[»] chr6 (2 HSPs)
chr6 (1-136)||(9958796-9958928)
chr6 (241-383)||(26904985-26905127)
[»] scaffold0011 (1 HSPs)
scaffold0011 (306-374)||(189071-189139)
[»] scaffold0789 (1 HSPs)
scaffold0789 (4-73)||(4616-4682)


Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 4646391 - 4646757
Alignment:
Q  1 tcgatattacatttatatctacctgacataggaggctgccacaattagatcatgttgtgttggtgtgaggtggaggcccccgtatgcgcagccatagcat 100  Q
    ||||||||||||||||||||||||| |||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4646391 tcgatattacatttatatctacctggcatatgaggctgccacaa---gatcatgttgtgttggtgtgaggtggaggcccccgtatgcgcaaccatagcat 4646487  T
Q  101 gctgagaagccgaagtagatgcaagggtatccggagcatttgccaaattccatagcattgctaccataacattgtccataatggaacgtccgggaacaaa 200  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||              |||| |||||||||||||||||||||    
T  4646488 gctgagaagctgaagtagatgcaagggtatccggagcattcgccaaatgccatagcattg--------------tccagaatggaacgtccgggaacaaa 4646573  T
Q  201 cgcgaactgattgttagagatgcactgagataatacattcttcaacctgttcactagtactttagaaacaattttatatagcacattgcacagtgcaatt 300  Q
    || | ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||    
T  4646574 cgtggactgattgtcagagatgcactgagataatacattcttcaacctgttcgctagtactttagaaacaattttatatagcacattgaacagtgctatt 4646673  T
Q  301 ggccgccaatctttcatgctaacctgcgtagaaccttttggaataagggaaatgttagtaatatttaaatcagggagaaactgt 384  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  4646674 gaccgccaatctttcatgctaacctgcgtagaaccttttggaataagggcaatgttagtaatatttaaatcagggggaaactgt 4646757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 157 - 374
Target Start/End: Complemental strand, 41598727 - 41598510
Alignment:
Q  157 attgctaccataacattgtccataatggaacgtccgggaacaaacgcgaactgattgttagagatgcactgagataatacattcttcaacctgttcacta 256  Q
    |||||||||||| |||| || | |||||| || ||||||||||||||  |||| || | |||||| ||||| || || |||||||||||||||||  |||    
T  41598727 attgctaccatatcattatctagaatggagcgaccgggaacaaacgcagactggttatcagagatacactgggacaaaacattcttcaacctgtttgcta 41598628  T
Q  257 gtactttagaaacaattttatatagcacattgcacagtgcaattggccgccaatctttcatgctaacctgcgtagaaccttttggaataagggaaatgtt 356  Q
      |||||||| | ||||||||||| ||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| | ||||||    
T  41598627 acactttagatataattttatataacacattgcatagtgctattggccgccaatctttcatactaacctgcgtggaacctttaggaataagtgcaatgtt 41598528  T
Q  357 agtaatatttaaatcagg 374  Q
    ||||||||||||||||||    
T  41598527 agtaatatttaaatcagg 41598510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 217 - 374
Target Start/End: Original strand, 17244982 - 17245139
Alignment:
Q  217 gagatgcactgagataatacattcttcaacctgttcactagtactttagaaacaattttatatagcacattgcacagtgcaattggccgccaatctttca 316  Q
    |||||||| ||||| || || ||||||||||||||  | ||||| || |||| ||||||||| |  ||||| || ||||| || || |||||||| ||||    
T  17244982 gagatgcattgagacaaaactttcttcaacctgtttgcgagtaccttggaaataattttatacaagacattacaaagtgctatagggcgccaatccttca 17245081  T
Q  317 tgctaacctgcgtagaaccttttggaataagggaaatgttagtaatatttaaatcagg 374  Q
    | ||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  17245082 tactaacctgcgtagaaccttttggaataagagcaatgttagtaatattcaaatcagg 17245139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 41601134 - 41600999
Alignment:
Q  1 tcgatattacatttatatctacctgacataggaggctgccacaattagatcatgttgtgttggtgtgaggtggaggcccccgtatgcgcagccatagcat 100  Q
    ||||||||||||||||||||||||||  |||| ||||||||||||   ||  || ||||||||||||||| |||||||| | |||||||||||||  |||    
T  41601134 tcgatattacatttatatctacctgatgtagg-ggctgccacaat---attttggtgtgttggtgtgaggaggaggccctcatatgcgcagccattacat 41601039  T
Q  101 gctgagaagccgaagtagatgcaagggtatccggagcatt 140  Q
    |||||| || |||||| |||||||||| ||| ||||||||    
T  41601038 gctgaggaggcgaagtggatgcaagggcatctggagcatt 41600999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 380
Target Start/End: Original strand, 3207540 - 3207679
Alignment:
Q  241 ttcaacctgttcactagtactttagaaacaattttatatagcacattgcacagtgcaattggccgccaatctttcatgctaacctgcgtagaaccttttg 340  Q
    |||||||| ||| |||| ||||| || |  ||||| || || || ||||| ||||| || |||||||| |||||||||||||||||| | ||| ||||||    
T  3207540 ttcaacctattcgctagcacttttgagatgattttgtaaaggacgttgcatagtgcgataggccgccagtctttcatgctaacctgcatggaaacttttg 3207639  T
Q  341 gaataagggaaatgttagtaatatttaaatcagggagaaa 380  Q
    ||||||| | ||||||||||| ||||||||||||| ||||    
T  3207640 gaataagtgcaatgttagtaaaatttaaatcagggggaaa 3207679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 157 - 374
Target Start/End: Complemental strand, 31933013 - 31932796
Alignment:
Q  157 attgctaccataacattgtccataatggaacgtccgggaacaaacgcgaactgattgttagagatgcactgagataatacattcttcaacctgttcacta 256  Q
    ||||||||||| ||||| || | |||||| || ||||||||||||||| |||| |||| |||||| |||||||  ||||||||||||||||||||  |||    
T  31933013 attgctaccatgacattatcaagaatggagcgaccgggaacaaacgcggactggttgtcagagatacactgaggcaatacattcttcaacctgtttgcta 31932914  T
Q  257 gtactttagaaacaattttatatagcacattgcacagtgcaattggccgccaatctttcatgctaacctgcgtagaaccttttggaataagggaaatgtt 356  Q
      ||||| || | ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||    
T  31932913 acactttggatataattttatataacacattgcatagtgctattggccgccaatctttcatgctaacctgcgtagaacctttaggaataagtgcaatgtt 31932814  T
Q  357 agtaatatttaaatcagg 374  Q
    |||||||||||| |||||    
T  31932813 agtaatatttaactcagg 31932796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 157 - 374
Target Start/End: Original strand, 31663383 - 31663600
Alignment:
Q  157 attgctaccataacattgtccataatggaacgtccgggaacaaacgcgaactgattgttagagatgcactgagataatacattcttcaacctgttcacta 256  Q
    ||||||||||| ||||| || | |||||| || ||||||||||||||| |||| |||| ||| || |||||||  ||||||||||||||||||||  |||    
T  31663383 attgctaccatgacattatcaagaatggagcgaccgggaacaaacgcggactggttgtcagatatacactgaggcaatacattcttcaacctgtttgcta 31663482  T
Q  257 gtactttagaaacaattttatatagcacattgcacagtgcaattggccgccaatctttcatgctaacctgcgtagaaccttttggaataagggaaatgtt 356  Q
      ||||| || | ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||    
T  31663483 acactttggatataattttatataacacattgcatagtgctattggccgccaatctttcatgctaacctgcgtagaacctttaggaataagtgcaatgtt 31663582  T
Q  357 agtaatatttaaatcagg 374  Q
    |||||||||||| |||||    
T  31663583 agtaatatttaactcagg 31663600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 192 - 374
Target Start/End: Complemental strand, 31952312 - 31952130
Alignment:
Q  192 gggaacaaacgcgaactgattgttagagatgcactgagataatacattcttcaacctgttcactagtactttagaaacaattttatatagcacattgcac 291  Q
    ||||||||||||| |||| |||| |||||| |||||||  ||||||||||||||||||||  |||  ||||| || | ||||||||||| |||||||||     
T  31952312 gggaacaaacgcggactggttgtcagagatacactgaggcaatacattcttcaacctgtttgctaacactttggatataattttatataacacattgcat 31952213  T
Q  292 agtgcaattggccgccaatctttcatgctaacctgcgtagaaccttttggaataagggaaatgttagtaatatttaaatcagg 374  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||    
T  31952212 agtgctattggccgccaatctttcatgctaacctgcgtagaacctttaggaataagtgcaatgttagtaatatttaaatcagg 31952130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 157 - 384
Target Start/End: Complemental strand, 8563693 - 8563466
Alignment:
Q  157 attgctaccataacattgtccataatggaacgtccgggaacaaacgcgaactgattgttagagatgcactgagataatacattcttcaacctgttcacta 256  Q
    |||||||||||| |||| || | |||||| || ||||| || || ||  |||| || | ||| ||||||| ||| || |||| ||||||||||||  |||    
T  8563693 attgctaccatagcattatctagaatggagcgaccggggacgaaagcagactggttatcagaaatgcacttagacaacacatgcttcaacctgtttgcta 8563594  T
Q  257 gtactttagaaacaattttatatagcacattgcacagtgcaattggccgccaatctttcatgctaacctgcgtagaaccttttggaataagggaaatgtt 356  Q
      |||||||||| |||||||||||  |||||||| ||||| |||||||||||||| |||||||||||||||| ||||||||| |||||||| | ||||||    
T  8563593 acactttagaaataattttatataaaacattgcaaagtgctattggccgccaatccttcatgctaacctgcgaagaacctttaggaataagtgcaatgtt 8563494  T
Q  357 agtaatatttaaatcagggagaaactgt 384  Q
    ||||||||||||||||||  ||||||||    
T  8563493 agtaatatttaaatcaggtggaaactgt 8563466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 238 - 380
Target Start/End: Original strand, 6008559 - 6008701
Alignment:
Q  238 ttcttcaacctgttcactagtactttagaaacaattttatatagcacattgcacagtgcaattggccgccaatctttcatgctaacctgcgtagaacctt 337  Q
    |||||||||| |||  |||  ||||| ||||  ||||| |||| |||||| || ||||| || || |||||||| |||||||||||||||||||||||||    
T  6008559 ttcttcaaccggtttgctaacactttcgaaatgattttgtataacacattacaaagtgctatagggcgccaatccttcatgctaacctgcgtagaacctt 6008658  T
Q  338 ttggaataagggaaatgttagtaatatttaaatcagggagaaa 380  Q
    |||| ||||||| ||||||||||||||| |||| |||| ||||    
T  6008659 ttgggataagggcaatgttagtaatattcaaattagggggaaa 6008701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 238 - 380
Target Start/End: Complemental strand, 17784430 - 17784288
Alignment:
Q  238 ttcttcaacctgttcactagtactttagaaacaattttatatagcacattgcacagtgcaattggccgccaatctttcatgctaacctgcgtagaacctt 337  Q
    |||||||||| |||  |||  ||||| ||||  ||||| |||| |||||| || ||||| || || ||||| || |||||||||||||||||||||||||    
T  17784430 ttcttcaaccggtttgctaacactttcgaaatgattttgtataacacattacaaagtgctatagggcgccagtccttcatgctaacctgcgtagaacctt 17784331  T
Q  338 ttggaataagggaaatgttagtaatatttaaatcagggagaaa 380  Q
    ||| |||||||| ||||||||||||||| ||||||||| ||||    
T  17784330 ttgaaataagggcaatgttagtaatattcaaatcagggggaaa 17784288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 238 - 380
Target Start/End: Complemental strand, 19085949 - 19085807
Alignment:
Q  238 ttcttcaacctgttcactagtactttagaaacaattttatatagcacattgcacagtgcaattggccgccaatctttcatgctaacctgcgtagaacctt 337  Q
    |||||||||| |||  |||  ||||| ||||  ||||| |||| |||||| || ||||| || || ||||| || |||||||||||||||||||||||||    
T  19085949 ttcttcaaccggtttgctaacactttcgaaatgattttgtataacacattacaaagtgctatagggcgccagtccttcatgctaacctgcgtagaacctt 19085850  T
Q  338 ttggaataagggaaatgttagtaatatttaaatcagggagaaa 380  Q
    ||| |||||||| ||||||||||||||| ||||||||| ||||    
T  19085849 ttgaaataagggcaatgttagtaatattcaaatcagggggaaa 19085807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 238 - 380
Target Start/End: Complemental strand, 19093057 - 19092915
Alignment:
Q  238 ttcttcaacctgttcactagtactttagaaacaattttatatagcacattgcacagtgcaattggccgccaatctttcatgctaacctgcgtagaacctt 337  Q
    |||||||||| |||  |||  ||||| ||||  ||||| |||| |||||| || ||||| || || ||||| || |||||||||||||||||||||||||    
T  19093057 ttcttcaaccggtttgctaacactttcgaaatgattttgtataacacattacaaagtgctatagggcgccagtccttcatgctaacctgcgtagaacctt 19092958  T
Q  338 ttggaataagggaaatgttagtaatatttaaatcagggagaaa 380  Q
    ||| |||||||| ||||||||||||||| ||||||||| ||||    
T  19092957 ttgaaataagggcaatgttagtaatattcaaatcagggggaaa 19092915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 220 - 374
Target Start/End: Complemental strand, 49640235 - 49640081
Alignment:
Q  220 atgcactgagataatacattcttcaacctgttcactagtactttagaaacaattttatatagcacattgcacagtgcaattggccgccaatctttcatgc 319  Q
    ||||| ||||| || || ||||||||||||||  ||||||| || |||| |||||| || |  ||||| || ||||| || || |||||||| ||||| |    
T  49640235 atgcattgagacaaaactttcttcaacctgtttgctagtaccttggaaataattttgtacaagacattacaaagtgctatagggcgccaatccttcatac 49640136  T
Q  320 taacctgcgtagaaccttttggaataagggaaatgttagtaatatttaaatcagg 374  Q
    |||| |||| | |||||||||||||||| | ||||||||||||||| ||||||||    
T  49640135 taacatgcgcataaccttttggaataagagcaatgttagtaatattcaaatcagg 49640081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 31808863 - 31808721
Alignment:
Q  1 tcgatattacatttatatctacctgacataggaggctgccacaattagatcatgttgtgttggtgtgaggtggaggcccccgtatgcgcagccatagcat 100  Q
    ||||||||||||||||||||||||||  | || ||||||||||||   |   |  |||| |||||||||| |||||||||| ||||||||| |||  |||    
T  31808863 tcgatattacatttatatctacctgatgtggggggctgccacaat---actctactgtggtggtgtgaggaggaggcccccatatgcgcaggcatgacat 31808767  T
Q  101 gctgagaagccgaagtagatgcaagggtatccggagcatttgccaa 146  Q
    |||||| || |||||| |||||||||  |||||||| ||| |||||    
T  31808766 gctgaggaggcgaagtggatgcaaggacatccggagaattcgccaa 31808721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 157 - 374
Target Start/End: Complemental strand, 25102316 - 25102099
Alignment:
Q  157 attgctaccataacattgtccataatggaacgtccgggaacaaacgcgaactgattgttagagatgcactgagataatacattcttcaacctgttcacta 256  Q
    |||||||||||| |||| || | |||||| || ||||||||||||||| || | || | ||||||||||||||  ||||| ||||||||||||||  |||    
T  25102316 attgctaccatagcattatctagaatggagcgaccgggaacaaacgcggacgggttatcagagatgcactgaggcaatacgttcttcaacctgtttgcta 25102217  T
Q  257 gtactttagaaacaattttatatagcacattgcacagtgcaattggccgccaatctttcatgctaacctgcgtagaaccttttggaataagggaaatgtt 356  Q
      ||||| || | ||||||||||| ||||||||| | ||| |||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||||    
T  25102216 acactttggatataattttatataacacattgcataatgctattggctgccaatctttcatgctaacctgcgtagaacctttaggaataagtgcaatgtt 25102117  T
Q  357 agtaatatttaaatcagg 374  Q
    ||||||||||||||||||    
T  25102116 agtaatatttaaatcagg 25102099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 344
Target Start/End: Complemental strand, 20658774 - 20658733
Alignment:
Q  303 ccgccaatctttcatgctaacctgcgtagaaccttttggaat 344  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  20658774 ccgccaatccttcatgctaacctgcgaggaaccttttggaat 20658733  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 328
Target Start/End: Complemental strand, 45011467 - 45011398
Alignment:
Q  259 actttagaaacaattttatatagcacattgcacagtgcaattggccgccaatctttcatgctaacctgcg 328  Q
    |||||||| | |||||| |||||  ||||||| || || || || |||||||||||||||||||||||||    
T  45011467 actttagatataattttgtatagggcattgcaaagagctatgggacgccaatctttcatgctaacctgcg 45011398  T

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Target: scaffold0252 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 235 - 374
Target Start/End: Complemental strand, 5521 - 5382
Alignment:
Q  235 acattcttcaacctgttcactagtactttagaaacaattttatatagcacattgcacagtgcaattggccgccaatctttcatgctaacctgcgtagaac 334  Q
    |||| ||||||||||||  |||  |||||||| | |||||||||||  |||||||| ||||| ||||||||||||||||||||||||||||||| | |||    
T  5521 acatgcttcaacctgtttcctaacactttagatataattttatataaaacattgcaaagtgctattggccgccaatctttcatgctaacctgcgaataac 5422  T
Q  335 cttttggaataagggaaatgttagtaatatttaaatcagg 374  Q
    |||| |||||||| | ||||||| ||||||||||||||||    
T  5421 ctttaggaataagtgcaatgttaataatatttaaatcagg 5382  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 16084772 - 16084630
Alignment:
Q  1 tcgatattacatttatatctacctgacataggaggctgccacaattagatcatgttgtgttggtgtgaggtggaggcccccgtatgcgcagccatagcat 100  Q
    ||||||||||||||||||||| ||||  |||| ||||||||||||   ||  || ||||||||||||||| |||||||| | |||||||||||||  |||    
T  16084772 tcgatattacatttatatctatctgatgtagggggctgccacaat---attctggtgtgttggtgtgaggaggaggccctcatatgcgcagccattacat 16084676  T
Q  101 gctgagaagccgaagtagatgcaagggtatccggagcatttgccaa 146  Q
    |||||| || |||||| |||||||||  ||| |||||||| |||||    
T  16084675 gctgaggaggcgaagtggatgcaaggacatctggagcattcgccaa 16084630  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 22289917 - 22289850
Alignment:
Q  313 ttcatgctaacctgcgtagaaccttttggaataagggaaatgttagtaatatttaaatcagggagaaa 380  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| ||||||||| ||||    
T  22289917 ttcatgctaacctgcttagaaccttttgggataagggcaatgttagtaatattcaaatcagggggaaa 22289850  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 380
Target Start/End: Complemental strand, 28244234 - 28244125
Alignment:
Q  271 attttatatagcacattgcacagtgcaattggccgccaatctttcatgctaacctgcgtagaaccttttggaataagggaaatgttagtaatatttaaat 370  Q
    ||||| |||| |||||| || ||||| || || || || || |||||| |||||||||||||||||||||| ||||||| ||| ||||||||||| ||||    
T  28244234 attttgtataacacattacaaagtgctataggtcgtcagtccttcatgttaacctgcgtagaaccttttgggataagggcaatattagtaatattcaaat 28244135  T
Q  371 cagggagaaa 380  Q
    ||||| ||||    
T  28244134 cagggggaaa 28244125  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 238 - 380
Target Start/End: Complemental strand, 30856978 - 30856836
Alignment:
Q  238 ttcttcaacctgttcactagtactttagaaacaattttatatagcacattgcacagtgcaattggccgccaatctttcatgctaacctgcgtagaacctt 337  Q
    |||||||||| |||  |||  ||||| ||||  ||||| |||| |||||| || ||||| || || ||| | || |||||||||||||||||||||||||    
T  30856978 ttcttcaaccggtttgctaacactttcgaaatgattttgtataacacattacaaagtgctatagggcgctagtccttcatgctaacctgcgtagaacctt 30856879  T
Q  338 ttggaataagggaaatgttagtaatatttaaatcagggagaaa 380  Q
    |||| ||||||| ||||||||||||||| ||||||||| ||||    
T  30856878 ttgggataagggcaatgttagtaatattcaaatcagggggaaa 30856836  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 55225156 - 55225088
Alignment:
Q  304 cgccaatctttcatgctaacctgcgtagaaccttttggaataagggaaatgttagtaatatttaaatca 372  Q
    ||||| || ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||    
T  55225156 cgccagtccttcatgctaacctgcgtagaaccttttgggataagggcaatgttagtaatattcaaatca 55225088  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 374
Target Start/End: Original strand, 29338397 - 29338554
Alignment:
Q  217 gagatgcactgagataatacattcttcaacctgttcactagtactttagaaacaattttatatagcacattgcacagtgcaattggccgccaatctttca 316  Q
    |||||||| ||||| || || ||||||||||||||  | || || || |||| ||||||||| |  ||||| || ||||  || || ||||||||  |||    
T  29338397 gagatgcattgagacaaaactttcttcaacctgtttgcgaggaccttggaaataattttatacaagacattacaaagtgttatagggcgccaatccctca 29338496  T
Q  317 tgctaacctgcgtagaaccttttggaataagggaaatgttagtaatatttaaatcagg 374  Q
      ||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  29338497 aactaacctgcgtagaaccttttggaataagagcaatgttagtaatattcaaatcagg 29338554  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 14503262 - 14503195
Alignment:
Q  313 ttcatgctaacctgcgtagaaccttttggaataagggaaatgttagtaatatttaaatcagggagaaa 380  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| ||||||||| ||||    
T  14503262 ttcatgctaacctgcttagaaccttttgggataagggcaatgttagtaatattcaaatcagggggaaa 14503195  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 371
Target Start/End: Original strand, 15993009 - 15993076
Alignment:
Q  304 cgccaatctttcatgctaacctgcgtagaaccttttggaataagggaaatgttagtaatatttaaatc 371  Q
    ||||| || ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||    
T  15993009 cgccagtccttcatgctaacctgcgtagaaccttttgggataagggcaatgttagtaatattcaaatc 15993076  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 27978447 - 27978356
Alignment:
Q  1 tcgatattacatttatatctacctgacataggaggctgccacaattagatcatgttgtgttggtgtgaggtggaggcccccgtatgcgcagccat 95  Q
    |||||||||||||||||||||||||||||||| || || ||||   ||||  | |||||||||||||||| | |||||||| | | |||||||||    
T  27978447 tcgatattacatttatatctacctgacatagggggttgtcaca---agattctattgtgttggtgtgaggagcaggcccccatgttcgcagccat 27978356  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 28035716 - 28035625
Alignment:
Q  1 tcgatattacatttatatctacctgacataggaggctgccacaattagatcatgttgtgttggtgtgaggtggaggcccccgtatgcgcagccat 95  Q
    |||||||||||||||||||||||||||||||| || || ||||   ||||  | |||||||||||||||| | |||||||| | | |||||||||    
T  28035716 tcgatattacatttatatctacctgacatagggggttgtcaca---agattctattgtgttggtgtgaggagcaggcccccatgttcgcagccat 28035625  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 9958928 - 9958796
Alignment:
Q  1 tcgatattacatttatatctacctgacataggaggctgccacaattagatcatgttgtgttggtgtgaggtggaggcccccgtatgcgcagccatagcat 100  Q
    ||||||||||| ||||||||||||||  | || ||||||||||||   || ||||||||||| ||||||| |||||||||| |||||||  ||||  |||    
T  9958928 tcgatattacacttatatctacctgatgtggggggctgccacaat---attatgttgtgttgctgtgaggaggaggcccccatatgcgcgaccatgacat 9958832  T
Q  101 gctgagaagccgaagtagatgcaagggtatccggag 136  Q
    ||| || || |||||| |||||||||  ||||||||    
T  9958831 gctaaggaggcgaagtggatgcaaggacatccggag 9958796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 383
Target Start/End: Complemental strand, 26905127 - 26904985
Alignment:
Q  241 ttcaacctgttcactagtactttagaaacaattttatatagcacattgcacagtgcaattggccgccaatctttcatgctaacctgcgtagaaccttttg 340  Q
    |||||||||||  |||  || || |||| ||||||||| || ||||| || || ||||| || ||||||||   |||||||||||||| ||||||||| |    
T  26905127 ttcaacctgtttgctaagaccttcgaaataattttataaagaacattacatagagcaatgggacgccaatcgcgcatgctaacctgcgaagaacctttcg 26905028  T
Q  341 gaataagggaaatgttagtaatatttaaatcagggagaaactg 383  Q
    ||||||| | |||||||||||| || ||||| ||| |||||||    
T  26905027 gaataagagcaatgttagtaatgttcaaatccgggggaaactg 26904985  T

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Target: scaffold0011 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 374
Target Start/End: Original strand, 189071 - 189139
Alignment:
Q  306 ccaatctttcatgctaacctgcgtagaaccttttggaataagggaaatgttagtaatatttaaatcagg 374  Q
    |||||| ||||| ||||| ||||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  189071 ccaatccttcatactaacttgcgtagaaccttttggaataagagcaatgttagtaatattcaaatcagg 189139  T

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Target: scaffold0789 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 4616 - 4682
Alignment:
Q  4 atattacatttatatctacctgacataggaggctgccacaattagatcatgttgtgttggtgtgaggtgg 73  Q
    ||||| || |||||||||||||||||||| || |||||||   ||||| |||||||||||||||||||||    
T  4616 atattgcacttatatctacctgacatagggggttgccaca---agatcctgttgtgttggtgtgaggtgg 4682  T

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