View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5809_low_7 (Length: 357)
Name: NF5809_low_7
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5809_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 23 - 349
Target Start/End: Complemental strand, 5303178 - 5302859
Alignment:
| Q |
23 |
atgttgtattcatcgatatttgtcgaggatgactctgatgaagtaattttcttattgctaaattgatgtcttaa-tgttttcttctctttttggttgctg |
121 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5303178 |
atgttgtattgatcgatatttgtcgaggatgactctgatgaagtaattttcttattgctaaattgatgtcttaaatgttttcttctctttttggttgctg |
5303079 |
T |
|
| Q |
122 |
gtaattaatatatttgacttacatacatctcatcatttttctttattcagccaccatctaattgcttcacatgtccaaaccaaatcatctaagtccaaat |
221 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5303078 |
gtaat----atatttgacttacatacatctcatcatttttctttattcagccaccatctaattgcttcacatgtccaaaccaaatcatctaagtccaaat |
5302983 |
T |
|
| Q |
222 |
tcattagtattaattttctgggtgaagttgagaaaacttttagttcaacccacctaaattgaaattcaactgtannnnnnnattaagaggtttttagacc |
321 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
5302982 |
tcattagt----attttctgggtgaagttgagaaaacttttagttcaacccacctaaattgaaattcaactgtatttttttagtaagaggtttttagacc |
5302887 |
T |
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| Q |
322 |
tatcgttgcctcagtattaacttcatct |
349 |
Q |
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||||||||||||||||||| |||||||| |
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| T |
5302886 |
tatcgttgcctcagtattagcttcatct |
5302859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 23 - 295
Target Start/End: Complemental strand, 54728785 - 54728522
Alignment:
| Q |
23 |
atgttgtattcatcgatatttgtcgaggatgactctgatgaagtaattttcttattgctaaattgatgtcttaatgttttcttctctttttggttgctgg |
122 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54728785 |
atgttgtattgatctatatttgtcgaggatgactctgatgaagtaattttcttattgctaaattgatgtcttaatgttttcttctctttttggttgctg- |
54728687 |
T |
|
| Q |
123 |
taattaatatatttgacttacatacatctcatcatttttctttattcagccaccatctaattgcttcacatgtccaaaccaaatcatctaagtccaaatt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54728686 |
----taatatatttgacttacatacatctcatcatttttctttattcagccaccatctaattgcttcacatgtccaaaccaaatcatctaagttcaaatt |
54728591 |
T |
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| Q |
223 |
cattagtattaattttctgggtgaagttgagaaaacttttagttcaacccacctaaattgaaattcaactgta |
295 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54728590 |
cattagt----attttctgggtgaagttgagaaaacttttagttcaacccacctaaattgaaattcaactgta |
54728522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 349
Target Start/End: Complemental strand, 54728230 - 54728196
Alignment:
| Q |
315 |
ttagacctatcgttgcctcagtattaacttcatct |
349 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
54728230 |
ttagacctatcgttgcctcagtattagcttcatct |
54728196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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