View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5811-Insertion-1 (Length: 1034)

Name: NF5811-Insertion-1
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5811-Insertion-1
NF5811-Insertion-1
[»] chr6 (38 HSPs)
chr6 (283-967)||(10578731-10579426)
chr6 (25-755)||(6596094-6596821)
chr6 (8-229)||(10579426-10579646)
chr6 (12-407)||(7131828-7132223)
chr6 (18-284)||(19632635-19632901)
chr6 (12-209)||(7119350-7119547)
chr6 (20-300)||(6395065-6395342)
chr6 (19-282)||(6426711-6426974)
chr6 (13-122)||(6589119-6589228)
chr6 (168-300)||(7993782-7993914)
chr6 (18-132)||(6416165-6416279)
chr6 (140-233)||(6410345-6410438)
chr6 (20-132)||(6410207-6410319)
chr6 (21-129)||(6432363-6432471)
chr6 (140-284)||(6602821-6602965)
chr6 (19-128)||(6423417-6423526)
chr6 (131-392)||(6403211-6403472)
chr6 (574-622)||(6423921-6423969)
chr6 (574-624)||(6395553-6395603)
chr6 (191-300)||(6432541-6432650)
chr6 (487-539)||(9412050-9412102)
chr6 (693-736)||(6423989-6424032)
chr6 (485-532)||(6436835-6436882)
chr6 (485-532)||(7993631-7993678)
chr6 (574-624)||(6410711-6410761)
chr6 (327-393)||(6423743-6423809)
chr6 (18-132)||(6602991-6603105)
chr6 (22-132)||(14820893-14821003)
chr6 (169-379)||(6594124-6594334)
chr6 (327-403)||(6410532-6410608)
chr6 (248-300)||(8913669-8913721)
chr6 (20-56)||(9411556-9411592)
chr6 (487-530)||(6432759-6432802)
chr6 (574-624)||(19633116-19633166)
chr6 (333-386)||(6427025-6427078)
chr6 (576-613)||(7132323-7132360)
chr6 (576-613)||(7135246-7135283)
chr6 (576-613)||(7138169-7138206)
[»] chr1 (11 HSPs)
chr1 (144-386)||(33160850-33161092)
chr1 (151-383)||(29690985-29691217)
chr1 (151-383)||(29718497-29718729)
chr1 (151-300)||(29658553-29658702)
chr1 (150-300)||(30827447-30827597)
chr1 (19-132)||(19468285-19468398)
chr1 (487-539)||(7555124-7555176)
chr1 (166-289)||(19468116-19468239)
chr1 (486-534)||(30827723-30827771)
chr1 (24-65)||(9581276-9581317)
chr1 (24-65)||(9586844-9586885)
[»] chr3 (4 HSPs)
chr3 (12-132)||(51764226-51764346)
chr3 (18-132)||(13470518-13470632)
chr3 (20-124)||(514519-514623)
chr3 (486-529)||(51763487-51763530)
[»] chr4 (12 HSPs)
chr4 (168-280)||(3438269-3438381)
chr4 (20-132)||(21834164-21834276)
chr4 (168-290)||(55908335-55908457)
chr4 (167-284)||(53761401-53761518)
chr4 (213-279)||(1600816-1600882)
chr4 (168-284)||(547283-547399)
chr4 (574-622)||(553775-553823)
chr4 (20-63)||(8186943-8186986)
chr4 (22-68)||(570737-570783)
chr4 (485-539)||(1755477-1755531)
chr4 (492-529)||(10633967-10634004)
chr4 (146-203)||(10634131-10634188)
[»] chr7 (6 HSPs)
chr7 (18-132)||(10614792-10614906)
chr7 (166-290)||(10169746-10169870)
chr7 (166-290)||(10177271-10177395)
chr7 (171-310)||(15091741-15091880)
chr7 (166-200)||(10167380-10167414)
chr7 (98-132)||(15091937-15091971)
[»] chr2 (1 HSPs)
chr2 (168-290)||(1037271-1037393)
[»] chr8 (3 HSPs)
chr8 (22-123)||(17627851-17627952)
chr8 (493-536)||(32151900-32151943)
chr8 (168-227)||(17627729-17627788)
[»] chr5 (6 HSPs)
chr5 (143-233)||(20477749-20477839)
chr5 (490-538)||(17205662-17205710)
chr5 (144-284)||(32267818-32267958)
chr5 (20-63)||(41901390-41901433)
chr5 (168-300)||(41889151-41889283)
chr5 (20-65)||(41889404-41889449)
[»] scaffold0262 (1 HSPs)
scaffold0262 (168-298)||(287-417)


Alignment Details
Target: chr6 (Bit Score: 477; Significance: 0; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 283 - 967
Target Start/End: Complemental strand, 10579426 - 10578731
Alignment:
Q  283 gagaactcggcaacatgtgtatcattaagnnnnnnngtgttgtaaagattcaaatgttgaatacatggacactttgataacagagagtgaattccattaa 382  Q
    |||||||||||||||||||||||||||||       |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10579426 gagaactcggcaacatgtgtatcattaagaaaaaaagtgttgtaaagactcaaatgttgaatacatggacactttgataacagagagtgaattccattaa 10579327  T
Q  383 tgaaatcagttcgattcttgaccaaccgacgttttgataacagagagtgacttcctccattcttgaaaatagtttgacttttgagaatagggcaactgag 482  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  10579326 tgaaatcagttcgattgttgaccaaccgacgttttgataacagagattgacttcc---attcttgaaaatagtttgacttttgagaatagggcaactgag 10579230  T
Q  483 ttcgaggttgagttcttcgagcaatgggaaacaatcggcaatgagtaacaagtcatttttgtataggaagtcagtagaacaagtaaaacatgtcaaagtt 582  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||| |||| ||||||||||    
T  10579229 ttcgaggttgagttctttgagcaatgggaaacaatcggcaacgagtaacaagtcatttttgtagagaaagtcagtagaacaagtgaaacttgtcaaagtt 10579130  T
Q  583 gttatgttttgggagaaagcttgcaacccatctgtgggaaagatgctttcgccggagagtgctagcgagttgagtttctcaaacgggaacttaggttcac 682  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10579129 gttatgttttgggagaaagctcgtaacccatctgtgggaaagatgctttcgccggagagagctagcgagttgagtttctcaaacgggaacttaggttcac 10579030  T
Q  683 cggagagaacgagcgatgtgagtttcttcaacgggaaactagagattaagcgaaaaatgttgtcaatgtcacaagaaatgccgacgcagtagttaagcgt 782  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  10579029 cggagagaacgagcgatgtgagtttcttcaac-ggaaactagtgattaagcgaaaaatgttgtcaacgtcacaagaaacgccgacgcagtagttaagcgt 10578931  T
Q  783 aatggaagtgaggttggggaaccttttgagtaggtgtttgagg-aagggactcttgagggatagacctcgagtgag-atagg-gactgctggttatggag 879  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||    
T  10578930 aatggaagtgaggttggggaaccttttgagtaggtatttgaggaaagggactcttgagggatagacgtcgagtgagaataggagactgttggttatggag 10578831  T
Q  880 agg-attg-ttggagacgagagatagag-attc-aatagt-accaccg-tttccttacag----atttcaaaatatattcc--acagtcatcaggtaaat 967  Q
    ||| |||| ||||||||||||||||||| |||| |||||| ||||||| ||||||||  |    |||||||||||||||||  |||||||||||||||||    
T  10578830 aggaattgtttggagacgagagatagagaattcaaatagtaaccaccgttttccttaacgaagtatttcaaaatatattcccaacagtcatcaggtaaat 10578731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 25 - 755
Target Start/End: Complemental strand, 6596821 - 6596094
Alignment:
Q  25 tcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggt 124  Q
    ||||||||||||||||| || ||||||||||||||  |||||||  |||||| || |||| |  |||||||||||||||||||||| |||||||||||||    
T  6596821 tcaagcagctgcaaattaggaaaaaaggaagctaatcttataatattttcattacttaaccaaaaatttctacccaaatagagagactttaattgagggt 6596722  T
Q  125 atacaccagatttcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctga 224  Q
    ||||| |||| ||| |||||||||   ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6596721 atacatcagaattctctacactctccgtcccaatagctgtgttttgcattttgatctcactaagcgaaggacaatttcttacgagggaaaacacggctga 6596622  T
Q  225 ttctgtgagccttgaacaacgattaaggtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgtgtatcattaagnnnnnnngtgttg 324  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||       |||       
T  6596621 ttctgtgagccttgaacaatgattaaggtttatagaaaccaaatcaccaagaaacaaagagaacccagcaacatgtgtatcattaagaaaaaaagtgcat 6596522  T
Q  325 taaagattcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagttcgattcttgaccaaccgacgttttgataaca 424  Q
    |  |||||||||||||||||| || |||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||| |||||||||||||||    
T  6596521 tccagattcaaatgttgaataaatcgacaatttgataacagagagtgaatttcgttaatgaaatcagttcgattgttgaccaactgacgttttgataaca 6596422  T
Q  425 gagagtgacttcctccattcttgaaaatagtttgacttttgagaatagggcaactgagttcgaggttgagttcttcgagcaatgggaaacaatcggcaat 524  Q
    |||||||| ||||   |||||||||| ||||||||| || || |||||||  | ||| ||||| ||||||||||| |||||||||||||||||| |||||    
T  6596421 gagagtgagttcc---attcttgaaattagtttgacattggaaaatagggttattgatttcgatgttgagttctttgagcaatgggaaacaatcagcaat 6596325  T
Q  525 gagtaacaagtcatttttgtataggaagtcagtagaacaagtaaaacatgtcaaagttgttatgttttgggagaaagcttgcaacccatctgtgggaaag 624  Q
    ||||||||||||||||||||| || ||||   |||||||||| | | | ||||||||||||||||||||||||||| || ||||||| || | |||||||    
T  6596324 gagtaacaagtcatttttgtagagaaagtttatagaacaagtgagagaggtcaaagttgttatgttttgggagaaaactcgcaacccgtcagcgggaaag 6596225  T
Q  625 atgctttcgccggagagtgctagcgagttgagtttctcaaacgggaacttaggttcaccggagagaacgagcgatgtgagtttcttcaacgggaaactag 724  Q
    |||||||||||||||||  | ||||| || ||||||| ||| |||||  ||||||| |||| || ||||||  |||||||||||||||||||||||||||    
T  6596224 atgctttcgccggagagaacgagcgatttaagtttcttaaatgggaatctaggttcgccggtgaaaacgagaaatgtgagtttcttcaacgggaaactag 6596125  T
Q  725 agattaagcgaaaaatgttgtcaatgtcaca 755  Q
    |||||||||||||||||||||| | ||||||    
T  6596124 agattaagcgaaaaatgttgtcgacgtcaca 6596094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 10579646 - 10579426
Alignment:
Q  8 attcgcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10579646 attcgcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacaatgaatttctacccaaatagag 10579547  T
Q  108 agattttaattgagggtatacaccagatttcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacg 207  Q
    ||||||||||||| ||||||||||||| ||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10579546 agattttaattga-ggtatacaccagaattctctacactctttgtccaaatagctgtgttttccattttgatctcactaagcgaaggacaatttcttacg 10579448  T
Q  208 agggaaaacaaggctgattctg 229  Q
    ||||||||||||||||||||||    
T  10579447 agggaaaacaaggctgattctg 10579426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 12 - 407
Target Start/End: Original strand, 7131828 - 7132223
Alignment:
Q  12 gcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagat 111  Q
    |||||||||||||||||| || || ||||||||||||||||||||||| |||| |||  ||||||||  ||||  | |||||||||| |||||||||||     
T  7131828 gcaagtattcaaatcaagaagttgtaaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgtaaatttctacctaaatagagagac 7131927  T
Q  112 tttaattgagggtatacaccagatttcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgaggg 211  Q
    ||||| ||||| ||||||| ||| ||| ||||||||| |||||| |||||||| | ||||||||||| ||||||||| ||||| || ||||| ||||| |    
T  7131928 tttaactgaggatatacactagaattccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtg 7132027  T
Q  212 aaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgtgtatcattaag 311  Q
    || |||||||| ||||||||||| |  ||||   |  |||||||| ||| |  || |||| ||||||| |||| ||||| | |||||||  |||||| ||    
T  7132028 aatacaaggctaattctgtgagcatccaacagtcacgaaggtttacagacagtaagtcacgaagaaaccaagacaactcagaaacatgttcatcattcag 7132127  T
Q  312 nnnnnnngtgttgtaaagattcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagttcgattcttgaccaa 407  Q
           |||     ||||||||||||||| |||||| | ||||| ||||||| | ||||||||||||||||||| | |||| |||| || |||||    
T  7132128 aaaatatgtgcacctaagattcaaatgttgtatacatcgccacttggataacatacagtgaattccattaatgaagttagtttgattgttcaccaa 7132223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 19632635 - 19632901
Alignment:
Q  18 attcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaat 117  Q
    ||||||||||||| ||| ||||||||| ||||| ||||| |||||| ||||| ||||||||| ||||  | |||||| ||||||||||||||| ||||||    
T  19632635 attcaaatcaagccgctacaaattgggaaaaaacgaagcgaacattgtaatcttttcatcacttaaccgtaaatttcgacccaaatagagagactttaat 19632734  T
Q  118 tgagggtatacaccagatttcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaaca 217  Q
    |||||||||||||||   ||| ||||||| | ||| | ||||| ||  ||||||||||||||||||||||| ||||||||||| || ||||| |||||||    
T  19632735 tgagggtatacaccaatattctctacactttcttttcaaatagatgcgttttccattttgatctcactaagtgaaggacaattactaacgagcgaaaaca 19632834  T
Q  218 aggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaatcaccaagaaacaaaga 284  Q
    | | | ||||||||||| |  ||||   ||||||||| ||||| |||||||||| | | ||||||||    
T  19632835 atgataattctgtgagcttccaacagtcattaaggttgatagacaccaaatcactatgcaacaaaga 19632901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 7119350 - 7119547
Alignment:
Q  12 gcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagat 111  Q
    |||||||||||||||||| || || ||||||||||||||||||||||| |||| |||  ||||||||  ||||  | |||||||||| |||||||||||     
T  7119350 gcaagtattcaaatcaagaagttgtaaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgtaaatttctacctaaatagagagac 7119449  T
Q  112 tttaattgagggtatacaccagatttcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgag 209  Q
    ||||| ||||| ||||||| ||| ||| ||||||||| |||||| |||||||| | ||||||||||| ||||||||| ||||| || ||||| |||||    
T  7119450 tttaactgaggatatacactagaattccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgag 7119547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 20 - 300
Target Start/End: Original strand, 6395065 - 6395342
Alignment:
Q  20 tcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattg 119  Q
    |||||||||| ||||| ||||||||||||| |||||  |||||||| || ||||||||   |||| |  ||||| |||||||||||||||| ||||| ||    
T  6395065 tcaaatcaagtagctgtaaattggggaaaatggaagtaaacattatgattatttcatctattaaccagtaatttgtacccaaatagagagagtttaactg 6395164  T
Q  120 agggtatacaccagatttcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaag 219  Q
    ||||||||||||||| | | | ||| ||| ||||||||||  ||| ||||||||||| |||||  ||||| ||||||| ||||| ||||| ||||| |||    
T  6395165 agggtatacaccagaatgcccaacagtctctttcccaatacatgtgttttccattttaatctcggtaagcaaaggacagtttctaacgagtgaaaaaaag 6395264  T
Q  220 gctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgt 300  Q
    | || |||||||||     ||| || |  |||||||||||| ||||||| |||||||||||||||||| ||  ||||||||    
T  6395265 gttgtttctgtgag---ataaccaccacaaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgt 6395342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 6426711 - 6426974
Alignment:
Q  19 ttcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaatt 118  Q
    ||||||||||| ||||| ||||||||||||| ||||||  ||||||| || |||||||||| |||| ||||||||||||||| ||||||||| || ||||    
T  6426711 ttcaaatcaagtagctgtaaattggggaaaatggaagcatacattatgatgatttcatcacttaaccatgaatttctacccagatagagagacttcaatt 6426810  T
Q  119 gagggtatacaccagatttcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaa 218  Q
    |||||||||||||||| |   ||| | | ||| ||||||| | |||   ||||||||| ||||||||||  |||||||| ||||| || || ||||||||    
T  6426811 gagggtatacaccagaatgttctaaagtatttatcccaattgatgtgccttccattttaatctcactaattgaaggacagtttctaacaagtgaaaacaa 6426910  T
Q  219 ggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaatcaccaagaaacaaa 282  Q
     | || |||||||||      ||||| | ||||||||||||| ||||| | ||||| |||||||    
T  6426911 tgttgtttctgtgagatgatgacaaccactaaggtttatagacaccaacttaccaaaaaacaaa 6426974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 6589228 - 6589119
Alignment:
Q  13 caagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagatt 112  Q
    |||| ||| |||||||||| ||  ||||||||||||| |||||| |||||||| ||  || |||||| |||| |||||||| |||||||||||||||| |    
T  6589228 caagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaatagagagact 6589129  T
Q  113 ttaattgagg 122  Q
    ||||||||||    
T  6589128 ttaattgagg 6589119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 168 - 300
Target Start/End: Complemental strand, 7993914 - 7993782
Alignment:
Q  168 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaa 267  Q
    |||||||||||| |||| ||| || ||||| ||||| ||||| |||||||||||||||||||||||| |   |||   | ||||||||||||| ||||||    
T  7993914 ttccattttgatttcacgaagtgatggacagtttctaacgagtgaaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaa 7993815  T
Q  268 tcaccaagaaacaaagagaactcggcaacatgt 300  Q
    ||||||||||  || || ||||| |||||||||    
T  7993814 tcaccaagaagtaatgacaactcagcaacatgt 7993782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 6416165 - 6416279
Alignment:
Q  18 attcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaat 117  Q
    ||||||||||||||||||||||||||||||   |||||  |||||||| ||   |||||| | |||| ||  |||| | |||||||||||||| ||||||    
T  6416165 attcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatcgcttaaccatttattttttcccaaatagagagactttaat 6416264  T
Q  118 tgagggtatacacca 132  Q
    |||||||||||||||    
T  6416265 tgagggtatacacca 6416279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 6410345 - 6410438
Alignment:
Q  140 ctacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgag 233  Q
    ||||||||| ||||||||||  |||| ||| ||||||||||||| |||| |||||||||||||| ||||| ||||||  |||| ||||||||||    
T  6410345 ctacactctctttcccaatacttgttcttttcattttgatctcattaagtgaaggacaatttctaacgagtgaaaactgggctaattctgtgag 6410438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 6410207 - 6410319
Alignment:
Q  20 tcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattg 119  Q
    |||||||||| || || |||||||| |||| |||||| ||||  || || |||||||||| |||||||| |||   | ||||||||||||| ||||||||    
T  6410207 tcaaatcaagtagttgtaaattgggaaaaatggaagcaaacaaaatgattatttcatcacttaacgatgtattgtaatccaaatagagagactttaattg 6410306  T
Q  120 agggtatacacca 132  Q
    |||||||||||||    
T  6410307 agggtatacacca 6410319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 6432363 - 6432471
Alignment:
Q  21 caaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattga 120  Q
    |||||||||  | |||||||||||||||| |||||| |||||||| ||| ||||||  | |||| |||||||   ||||||||||||||| ||||| |||    
T  6432363 caaatcaagatgttgcaaattggggaaaatggaagcaaacattatgatcctttcattccttaaccatgaattgtgacccaaatagagagactttaactga 6432462  T
Q  121 gggtataca 129  Q
    |||||||||    
T  6432463 gggtataca 6432471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 140 - 284
Target Start/End: Complemental strand, 6602965 - 6602821
Alignment:
Q  140 ctacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttga 239  Q
    ||||| ||| |||||||||| |||| | ||||||||||||||||||||| |||||||| ||| | || || |||||||||| | ||||||||||    ||    
T  6602965 ctacattctctttcccaatatctgtgtcttccattttgatctcactaagtgaaggacagtttttaacaagtgaaaacaaggataattctgtgaggtagga 6602866  T
Q  240 acaacgattaaggtttatagaaaccaaatcaccaagaaacaaaga 284  Q
    |||   | ||||||||||||| ||||||| |  ||||||||||||    
T  6602865 acattcactaaggtttatagacaccaaattagtaagaaacaaaga 6602821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 6423417 - 6423526
Alignment:
Q  19 ttcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaatt 118  Q
    ||||||||||| || |  ||||| ||||||| |||||| |||||||| || |||||||||| |||| | ||| |   ||||||||||||||| |||||||    
T  6423417 ttcaaatcaagtagttttaaattagggaaaatggaagcaaacattatgatgatttcatcacttaaccacgaagtgtaacccaaatagagagactttaatt 6423516  T
Q  119 gagggtatac 128  Q
    ||||||||||    
T  6423517 gagggtatac 6423526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 392
Target Start/End: Original strand, 6403211 - 6403472
Alignment:
Q  131 cagatttcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgt 230  Q
    |||| ||| |||||||||||||   ||||  ||| | |||||||||||| ||||| || |||||||||||    | ||| |||||||||| ||||| | |    
T  6403211 cagaattctctacactcttttttttaatacttgtgtgttccattttgatttcactgagtgaaggacaattcgaaaggagtgaaaacaaggttgattttct 6403310  T
Q  231 gagccttgaacaacgattaaggtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgtgtatcattaagnnnnnnngtgttgtaaaga 330  Q
     ||| |  ||||   ||||||||||||||| ||||| |||   ||||||||||| ||||| |||||||||  |||||| ||        |||| | ||||    
T  6403311 aagcatcaaacatgaattaaggtttatagacaccaactcatgtagaaacaaagaaaactcagcaacatgtaaatcattcagaaaataactgttattaaga 6403410  T
Q  331 ttcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagt 392  Q
    | ||||||||| ||||||  |||||| |||||||||||||  ||||||||||| || |||||    
T  6403411 tccaaatgttgtatacatctacacttggataacagagagtatattccattaataaagtcagt 6403472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 574 - 622
Target Start/End: Original strand, 6423921 - 6423969
Alignment:
Q  574 gtcaaagttgttatgttttgggagaaagcttgcaacccatctgtgggaa 622  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  6423921 gtcaaagttgttatgttttgggagaaagctcgcaacccatttgtgggaa 6423969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 574 - 624
Target Start/End: Original strand, 6395553 - 6395603
Alignment:
Q  574 gtcaaagttgttatgttttgggagaaagcttgcaacccatctgtgggaaag 624  Q
    ||||||||||| || |||||||||| |||||||||||||||||||||||||    
T  6395553 gtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaaag 6395603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 300
Target Start/End: Original strand, 6432541 - 6432650
Alignment:
Q  191 aaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaatcaccaagaaacaaagagaactc 290  Q
    ||||||| ||||  ||||| ||||||| |||||||||||||||   |  ||||  | ||||||||||||| ||||||||| |||||||||||||  || |    
T  6432541 aaggacagtttccaacgagtgaaaacagggctgattctgtgagatatcgacaattactaaggtttatagacaccaaatcagcaagaaacaaagacgaccc 6432640  T
Q  291 ggcaacatgt 300  Q
    ||||||||||    
T  6432641 ggcaacatgt 6432650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 487 - 539
Target Start/End: Original strand, 9412050 - 9412102
Alignment:
Q  487 aggttgagttcttcgagcaatgggaaacaatcggcaatgagtaacaagtcatt 539  Q
    |||||||||||||| ||||| |||||||| || ||||||||||||||||||||    
T  9412050 aggttgagttcttcaagcaaagggaaacattcagcaatgagtaacaagtcatt 9412102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 693 - 736
Target Start/End: Original strand, 6423989 - 6424032
Alignment:
Q  693 gagcgatgtgagtttcttcaacgggaaactagagattaagcgaa 736  Q
    |||||| |||||||||||||| ||||||||||||||||||||||    
T  6423989 gagcgacgtgagtttcttcaatgggaaactagagattaagcgaa 6424032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 485 - 532
Target Start/End: Original strand, 6436835 - 6436882
Alignment:
Q  485 cgaggttgagttcttcgagcaatgggaaacaatcggcaatgagtaaca 532  Q
    |||||||||||| || |||||| |||||||||||||||||||||||||    
T  6436835 cgaggttgagttgtttgagcaaagggaaacaatcggcaatgagtaaca 6436882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 485 - 532
Target Start/End: Complemental strand, 7993678 - 7993631
Alignment:
Q  485 cgaggttgagttcttcgagcaatgggaaacaatcggcaatgagtaaca 532  Q
    ||||||||||||||| |||||| |||||||||| ||||||||||||||    
T  7993678 cgaggttgagttctttgagcaaagggaaacaattggcaatgagtaaca 7993631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 574 - 624
Target Start/End: Original strand, 6410711 - 6410761
Alignment:
Q  574 gtcaaagttgttatgttttgggagaaagcttgcaacccatctgtgggaaag 624  Q
    ||||||||||| ||||||||||||||| |||||||||||| | ||||||||    
T  6410711 gtcaaagttgtaatgttttgggagaaaacttgcaacccatttatgggaaag 6410761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 327 - 393
Target Start/End: Original strand, 6423743 - 6423809
Alignment:
Q  327 aagattcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagtt 393  Q
    ||||||||||||||| |||||| ||||||| ||||||| |  | |||||||||||||||||| ||||    
T  6423743 aagattcaaatgttgtatacattgacacttggataacaaattgcgaattccattaatgaaattagtt 6423809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 6603105 - 6602991
Alignment:
Q  18 attcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaat 117  Q
    |||||||||||| ||||||||| |||||| | | ||||| |||||||| ||  ||| | ||| |||| || ||||   ||| ||||||||||| ||||||    
T  6603105 attcaaatcaagtagctgcaaactggggatagaagaagcaaacattatgattttttgaacacttaaccataaattgtcacctaaatagagagactttaat 6603006  T
Q  118 tgagggtatacacca 132  Q
    |||||||||| ||||    
T  6603005 tgagggtatatacca 6602991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 132
Target Start/End: Original strand, 14820893 - 14821003
Alignment:
Q  22 aaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgag 121  Q
    |||||||| ||||  ||||| ||||||| ||||||  |||  || || |||||||||  |||| |||||||   ||||||||||||||| || |||||||    
T  14820893 aaatcaagtagctttaaatttgggaaaatggaagcatacaaaatgattatttcatcatttaaccatgaattgtgacccaaatagagagacttcaattgag 14820992  T
Q  122 ggtatacacca 132  Q
    |||||||||||    
T  14820993 ggtatacacca 14821003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 379
Target Start/End: Complemental strand, 6594334 - 6594124
Alignment:
Q  169 tccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaat 268  Q
    ||||||||||| ||||||||  |||||||| |||| || || |||||||| ||||||||||||||       |||  | ||||||| || ||   ||||     
T  6594334 tccattttgatatcactaagtaaaggacaacttctaacaagtgaaaacaaagctgattctgtgagatggttgcaagaactaaggttaatggacttcaaac 6594235  T
Q  269 caccaagaaacaaagagaactcggcaacatgtgtatcattaagnnnnnnngtgttgtaaagattcaaatgttgaatacatggacactttgataacagaga 368  Q
    || ||||||||||||| |||||||||||||||  |||||| ||       | ||  | ||||||||||||||| |||||| ||||||| ||||||| |||    
T  6594234 cagcaagaaacaaagacaactcggcaacatgttgatcattcagaaaacgagcgtacttaagattcaaatgttgtatacatcgacacttggataacaaaga 6594135  T
Q  369 gtgaattccat 379  Q
    ||  |||||||    
T  6594134 gtacattccat 6594124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 327 - 403
Target Start/End: Original strand, 6410532 - 6410608
Alignment:
Q  327 aagattcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagttcgattcttga 403  Q
    ||||| || |||||| | |||| | ||||| ||||||||| ||||||||||||||||||||| || ||||| |||||    
T  6410532 aagatccatatgttgtaaacattggcacttggataacagatagtgaattccattaatgaaattagatcgatacttga 6410608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 8913721 - 8913669
Alignment:
Q  248 taaggtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgt 300  Q
    ||||||||||||| ||||||| ||||||||||||||| |||| | ||||||||    
T  8913721 taaggtttatagacaccaaattaccaagaaacaaagacaacttgacaacatgt 8913669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 9411556 - 9411592
Alignment:
Q  20 tcaaatcaagcagctgcaaattggggaaaaaggaagc 56  Q
    |||||||||||||||||||||||||||||| ||||||    
T  9411556 tcaaatcaagcagctgcaaattggggaaaatggaagc 9411592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 530
Target Start/End: Original strand, 6432759 - 6432802
Alignment:
Q  487 aggttgagttcttcgagcaatgggaaacaatcggcaatgagtaa 530  Q
    |||||||||| || |||||| |||||||||||||||||||||||    
T  6432759 aggttgagttgtttgagcaaagggaaacaatcggcaatgagtaa 6432802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 574 - 624
Target Start/End: Original strand, 19633116 - 19633166
Alignment:
Q  574 gtcaaagttgttatgttttgggagaaagcttgcaacccatctgtgggaaag 624  Q
    ||||||||||| ||| ||| |||||||||| ||||||||| ||||||||||    
T  19633116 gtcaaagttgtaatgctttcggagaaagctcgcaacccatttgtgggaaag 19633166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 6427025 - 6427078
Alignment:
Q  333 caaatgttgaatacatggacactttgataacagagagtgaattccattaatgaa 386  Q
    ||||||||| |||||||||||||| ||||||| | ||||||||  |||||||||    
T  6427025 caaatgttgtatacatggacacttggataacatacagtgaattgaattaatgaa 6427078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 576 - 613
Target Start/End: Original strand, 7132323 - 7132360
Alignment:
Q  576 caaagttgttatgttttgggagaaagcttgcaacccat 613  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  7132323 caaagttgtaatgttttgggagaaagctcgcaacccat 7132360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 576 - 613
Target Start/End: Original strand, 7135246 - 7135283
Alignment:
Q  576 caaagttgttatgttttgggagaaagcttgcaacccat 613  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccat 7135283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 576 - 613
Target Start/End: Original strand, 7138169 - 7138206
Alignment:
Q  576 caaagttgttatgttttgggagaaagcttgcaacccat 613  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  7138169 caaagttgtaatgttttgggagaaagctcgcaacccat 7138206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 8e-36; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 144 - 386
Target Start/End: Original strand, 33160850 - 33161092
Alignment:
Q  144 actctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaa 243  Q
    ||||| ||||||||||| |||   |||||||||||| |||||||| |||||||| ||| | || || |||||||| |||||||||||||||||  ||||     
T  33160850 actctctttcccaatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgtgagcctccaacat 33160949  T
Q  244 cgattaaggtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgtgtatcattaagnnnnnnngtgttgtaaagattcaaatgttgaa 343  Q
    | ||||||||||||||| |||||| || |||||||||||||||||||||||||||||  |||||| ||       ||||  |  |||| ||||| ||| |    
T  33160950 ccattaaggtttatagacaccaaagcagcaagaaacaaagagaactcggcaacatgttgatcattcagaaaataagtgtgatttagatccaaatattgta 33161049  T
Q  344 tacatggacactttgataacagagagtgaattccattaatgaa 386  Q
    || || |||| || ||||| |||||||||| ||||||||||||    
T  33161050 tatattgacagttggataagagagagtgaaatccattaatgaa 33161092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 151 - 383
Target Start/End: Complemental strand, 29691217 - 29690985
Alignment:
Q  151 ttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaa 250  Q
    |||||||||| ||| | |||||||||||| |||||||| |||||||||||| | ||||| |||||||| ||||||||||| ||| |  |||| | | |||    
T  29691217 ttcccaatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaa 29691118  T
Q  251 ggtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgtgtatcattaagnnnnnnngtgttgtaaagattcaaatgttgaatacatgg 350  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||||||  |||||| ||       ||||    ||||| ||||||||| ||| ||||    
T  29691117 ggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatatgg 29691018  T
Q  351 acactttgataacagagagtgaattccattaat 383  Q
    | | || ||||||||||||  ||||||||||||    
T  29691017 agagttggataacagagagctaattccattaat 29690985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 151 - 383
Target Start/End: Complemental strand, 29718729 - 29718497
Alignment:
Q  151 ttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaa 250  Q
    |||||||||| ||| | |||||||||||| |||||||| |||||||||||| | ||||| |||||||| ||||||||||| ||| |  |||| | | |||    
T  29718729 ttcccaatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaa 29718630  T
Q  251 ggtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgtgtatcattaagnnnnnnngtgttgtaaagattcaaatgttgaatacatgg 350  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||||||  |||||| ||       ||||    ||||| ||||||||| ||| ||||    
T  29718629 ggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatatgg 29718530  T
Q  351 acactttgataacagagagtgaattccattaat 383  Q
    | | || ||||||||||||  ||||||||||||    
T  29718529 agagttggataacagagagctaattccattaat 29718497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 151 - 300
Target Start/End: Complemental strand, 29658702 - 29658553
Alignment:
Q  151 ttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaa 250  Q
    |||||||||| ||| | |||||||||||| |||||||| |||||||||||| | ||||| |||||||| ||||||||||| ||| |  |||| | | |||    
T  29658702 ttcccaatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaa 29658603  T
Q  251 ggtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgt 300  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  29658602 ggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgt 29658553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 150 - 300
Target Start/End: Original strand, 30827447 - 30827597
Alignment:
Q  150 tttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgatta 249  Q
    ||||||||||| ||| |   |||||||||| ||| |||| |||||||||||| | ||||| |||||||| ||||||||||| ||| |  |||| ||| ||    
T  30827447 tttcccaatagttgtgtgaaccattttgatgtcagtaagtgaaggacaatttgtaacgagcgaaaacaaagctgattctgttagcttccaacatcgagta 30827546  T
Q  250 aggtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgt 300  Q
    ||||||||||| || |||| |  ||||| ||||||||| ||||||||||||    
T  30827547 aggtttatagacactaaatgaggaagaagcaaagagaagtcggcaacatgt 30827597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 19468398 - 19468285
Alignment:
Q  19 ttcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaatt 118  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||| ||  ||||||| | |||| |||||||   | |||| |||||| | |||||||    
T  19468398 ttcaaatcaagcagctgcaaattgggaaaaatggaagcaaacattatgatgttttcatcgcttaaccatgaattctcagccaagtagagatactttaatt 19468299  T
Q  119 gagggtatacacca 132  Q
    ||||| ||||||||    
T  19468298 gagggaatacacca 19468285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 487 - 539
Target Start/End: Original strand, 7555124 - 7555176
Alignment:
Q  487 aggttgagttcttcgagcaatgggaaacaatcggcaatgagtaacaagtcatt 539  Q
    |||||||||||||||||||| |||||||| || ||||||||||||||||||||    
T  7555124 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcatt 7555176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 289
Target Start/End: Complemental strand, 19468239 - 19468116
Alignment:
Q  166 ttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaacca 265  Q
    ||||||||||||||||||||||| ||||||||||| || ||||| | |||||||| ||| | ||||||      |||   | ||||||||||||| || |    
T  19468239 ttttccattttgatctcactaagtgaaggacaattcctaacgagtgtaaacaaggttgaatatgtgaggtccatacattcactaaggtttatagacacta 19468140  T
Q  266 aatcaccaagaaacaaagagaact 289  Q
    ||||||||||||||||||| ||||    
T  19468139 aatcaccaagaaacaaagacaact 19468116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 486 - 534
Target Start/End: Original strand, 30827723 - 30827771
Alignment:
Q  486 gaggttgagttcttcgagcaatgggaaacaatcggcaatgagtaacaag 534  Q
    ||||||||||| || |||||| |||||||||||||||||||||||||||    
T  30827723 gaggttgagttgtttgagcaaagggaaacaatcggcaatgagtaacaag 30827771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 9581276 - 9581317
Alignment:
Q  24 atcaagcagctgcaaattggggaaaaaggaagctaacattat 65  Q
    ||||||||||||||||||||||||||  ||||| ||||||||    
T  9581276 atcaagcagctgcaaattggggaaaattgaagcaaacattat 9581317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 9586844 - 9586885
Alignment:
Q  24 atcaagcagctgcaaattggggaaaaaggaagctaacattat 65  Q
    ||||||||||||||||||||||||||  ||||| ||||||||    
T  9586844 atcaagcagctgcaaattggggaaaattgaagcaaacattat 9586885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 5e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 51764346 - 51764226
Alignment:
Q  12 gcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagat 111  Q
    ||||| ||| |||||||||||||||||||||||||||| |||||| |||||||| ||  ||||||||| |||| ||| ||||  ||||| |||||||||     
T  51764346 gcaagaattaaaatcaagcagctgcaaattggggaaaatggaagcaaacattatgatgctttcatcacttaaccatgtattttcacccagatagagagac 51764247  T
Q  112 tttaattgagggtatacacca 132  Q
    |||||||||||||||||||||    
T  51764246 tttaattgagggtatacacca 51764226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 13470632 - 13470518
Alignment:
Q  18 attcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaat 117  Q
    |||||||||||||||||||||||||||||||  |||||| |||||||| ||   |||||||| |||| ||  |||| | |||||||||||||| ||||||    
T  13470632 attcaaatcaagcagctgcaaattggggaaattggaagcaaacattatgatgccttcatcacttaaccattgattttttcccaaatagagagactttaat 13470533  T
Q  118 tgagggtatacacca 132  Q
    |||||||||||||||    
T  13470532 tgagggtatacacca 13470518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 514623 - 514519
Alignment:
Q  20 tcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattg 119  Q
    |||||||||  ||||||||||| |||||||  ||||| ||||||||||   ||||||| | |||  |||||||   | ||||||||||||||||||||||    
T  514623 tcaaatcaattagctgcaaattcgggaaaattgaagcaaacattataaggttttcatctcttaagcatgaattgtgagccaaatagagagattttaattg 514524  T
Q  120 agggt 124  Q
    |||||    
T  514523 agggt 514519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 486 - 529
Target Start/End: Complemental strand, 51763530 - 51763487
Alignment:
Q  486 gaggttgagttcttcgagcaatgggaaacaatcggcaatgagta 529  Q
    ||||| |||||||||||||||||||||||| || ||||||||||    
T  51763530 gaggtcgagttcttcgagcaatgggaaacattccgcaatgagta 51763487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 2e-18; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 168 - 280
Target Start/End: Complemental strand, 3438381 - 3438269
Alignment:
Q  168 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaa 267  Q
    ||||||||| ||||||||||| ||||||||||| || | ||| ||||| |||||| ||| ||||||| | ||||||  | ||||||||||||| ||||||    
T  3438381 ttccatttttatctcactaagtgaaggacaattactaatgagtgaaaataaggctaattttgtgagcatcgaacaatcactaaggtttatagacaccaaa 3438282  T
Q  268 tcaccaagaaaca 280  Q
    |||||| ||||||    
T  3438281 tcaccatgaaaca 3438269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 21834276 - 21834164
Alignment:
Q  20 tcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattg 119  Q
    |||||||||||||||| |||||||||||||  ||||| |||||||| ||  ||||||||  |||| ||||||| |  |||||| ||||||| ||||||||    
T  21834276 tcaaatcaagcagctgtaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaaaagagagactttaattg 21834177  T
Q  120 agggtatacacca 132  Q
    |||||| ||||||    
T  21834176 agggtacacacca 21834164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 290
Target Start/End: Complemental strand, 55908457 - 55908335
Alignment:
Q  168 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaa 267  Q
    ||||||||||| |||| |||| ||||||||||| || ||||| | ||||| ||| || ||||||||| |   |||   | ||||||||||||| ||||||    
T  55908457 ttccattttgacctcaataagtgaaggacaattcctaacgagtgcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 55908358  T
Q  268 tcaccaagaaacaaagagaactc 290  Q
    ||||||||||||||||| |||||    
T  55908357 tcaccaagaaacaaagacaactc 55908335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 284
Target Start/End: Complemental strand, 53761518 - 53761401
Alignment:
Q  167 tttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaa 266  Q
    |||||||||||||||||||||| |||||||| ||| |  | || | |||||||||  ||| ||||| | |  |||||||| |||||||||| || |||||    
T  53761518 tttccattttgatctcactaagtgaaggacagtttttagcaagtgcaaacaaggccaattttgtgatcttataacaacgactaaggtttatggacaccaa 53761419  T
Q  267 atcaccaagaaacaaaga 284  Q
    ||||||||||| ||||||    
T  53761418 atcaccaagaagcaaaga 53761401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 1600816 - 1600882
Alignment:
Q  213 aaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaatcaccaagaaac 279  Q
    |||||||||||||||||||||| |   |||   | ||||||||||||||||||||||||||||||||    
T  1600816 aaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaac 1600882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 284
Target Start/End: Original strand, 547283 - 547399
Alignment:
Q  168 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaa 267  Q
    ||||||||||||||||||||| |||| |||||| || ||||| | |||||||||| | | ||||||      |||  || ||||||||||| |  |||||    
T  547283 ttccattttgatctcactaagtgaagcacaattactaacgagtgcaaacaaggctaaatttgtgagttgcccacactgactaaggtttataaactccaaa 547382  T
Q  268 tcaccaagaaacaaaga 284  Q
    |||||||||||||||||    
T  547383 tcaccaagaaacaaaga 547399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 574 - 622
Target Start/End: Original strand, 553775 - 553823
Alignment:
Q  574 gtcaaagttgttatgttttgggagaaagcttgcaacccatctgtgggaa 622  Q
    ||||||||||| |||||||||||||||||| ||||||||| || |||||    
T  553775 gtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaa 553823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 8186986 - 8186943
Alignment:
Q  20 tcaaatcaagcagctgcaaattggggaaaaaggaagctaacatt 63  Q
    |||||||||||| ||||||||||||||| ||||||| |||||||    
T  8186986 tcaaatcaagcaactgcaaattggggaataaggaagataacatt 8186943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 570737 - 570783
Alignment:
Q  22 aaatcaagcagctgcaaattggggaaaaaggaagctaacattataat 68  Q
    |||||||| || |||||||||||||||| |||||| |||||||||||    
T  570737 aaatcaagtagttgcaaattggggaaaatggaagcaaacattataat 570783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 485 - 539
Target Start/End: Original strand, 1755477 - 1755531
Alignment:
Q  485 cgaggttgagttcttcgagcaatgggaaacaatcggcaatgagtaacaagtcatt 539  Q
    |||||||||||||||| ||||| |||||||| || |||||||| || ||||||||    
T  1755477 cgaggttgagttcttcaagcaaagggaaacagtcagcaatgaggaagaagtcatt 1755531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 492 - 529
Target Start/End: Complemental strand, 10634004 - 10633967
Alignment:
Q  492 gagttcttcgagcaatgggaaacaatcggcaatgagta 529  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  10634004 gagttctttgagcaaagggaaacaatcggcaatgagta 10633967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 10634188 - 10634131
Alignment:
Q  146 tctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttct 203  Q
    |||||||||||||||  ||   ||||||||||||||||||||| |||||||| |||||    
T  10634188 tctttttcccaatagacgtgcattccattttgatctcactaagtgaaggacagtttct 10634131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 3e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 10614792 - 10614906
Alignment:
Q  18 attcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaat 117  Q
    ||||||||||||||| |||||||||||||||  |||||| ||| |||||||   |||||| | |||| |   |||| | |||||||||||||| ||||||    
T  10614792 attcaaatcaagcagttgcaaattggggaaattggaagcaaactttataatgccttcatcgcttaaccactgattttttcccaaatagagagactttaat 10614891  T
Q  118 tgagggtatacacca 132  Q
    |||||||||||||||    
T  10614892 tgagggtatacacca 10614906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 290
Target Start/End: Complemental strand, 10169870 - 10169746
Alignment:
Q  166 ttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaacca 265  Q
    ||||||||||||||||||||||| ||||||||||| || ||||| | |||||||| ||| | ||||| |    ||||  || ||||||||| ||| || |    
T  10169870 ttttccattttgatctcactaagtgaaggacaattcctaacgagtgcaaacaaggatgaatatgtgatctccaaacattgactaaggtttacagacacta 10169771  T
Q  266 aatcaccaagaaacaaagagaactc 290  Q
    ||||||||| ||||||||| |||||    
T  10169770 aatcaccaataaacaaagaaaactc 10169746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 290
Target Start/End: Complemental strand, 10177395 - 10177271
Alignment:
Q  166 ttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaacca 265  Q
    ||||||||||||||||||||||| ||||||||||| || ||||| | |||||||| ||| | ||||| |    ||||  || ||||||||| ||| || |    
T  10177395 ttttccattttgatctcactaagtgaaggacaattcctaacgagtgcaaacaaggatgaatatgtgatctccaaacattgactaaggtttacagacacta 10177296  T
Q  266 aatcaccaagaaacaaagagaactc 290  Q
    ||||||||| ||||||||| |||||    
T  10177295 aatcaccaataaacaaagaaaactc 10177271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 310
Target Start/End: Complemental strand, 15091880 - 15091741
Alignment:
Q  171 cattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaatca 270  Q
    ||||||||| ||| ||||||||||||| |||||  |||| |||||||||| || |||||||||  |   ||||  ||||||||||||||| ||||||| |    
T  15091880 cattttgatttcaataagcgaaggacagtttctaccgagtgaaaacaaggttgtttctgtgagattacgacaagcattaaggtttatagacaccaaatta 15091781  T
Q  271 ccaagaaacaaagagaactcggcaacatgtgtatcattaa 310  Q
    | |||||| | |||||| ||  ||||||||  ||||||||    
T  15091780 ctaagaaatagagagaaatcaacaacatgttgatcattaa 15091741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 10167414 - 10167380
Alignment:
Q  166 ttttccattttgatctcactaagcgaaggacaatt 200  Q
    ||||||||||||||||||||||| |||||||||||    
T  10167414 ttttccattttgatctcactaagtgaaggacaatt 10167380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 15091971 - 15091937
Alignment:
Q  98 ccaaatagagagattttaattgagggtatacacca 132  Q
    ||||||||||||| |||||||||||||||||||||    
T  15091971 ccaaatagagagactttaattgagggtatacacca 15091937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 290
Target Start/End: Complemental strand, 1037393 - 1037271
Alignment:
Q  168 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaa 267  Q
    ||||||||||| |||| |||| ||||||||||| || ||||| | ||||| ||| || ||||||||| |   |||   | ||||||||||||| ||||||    
T  1037393 ttccattttgacctcaataagtgaaggacaattcctaacgagtgcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 1037294  T
Q  268 tcaccaagaaacaaagagaactc 290  Q
    ||||||||||||||||| |||||    
T  1037293 tcaccaagaaacaaagacaactc 1037271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 17627952 - 17627851
Alignment:
Q  22 aaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgag 121  Q
    ||||||||||| |||||||||||||||| |||||| |||||| | ||  ||||||| | || | |||||||   | ||||||||||||||||||||||||    
T  17627952 aaatcaagcagttgcaaattggggaaaatggaagcaaacattttgatgttttcatcgcatagcaatgaattgaaagccaaatagagagattttaattgag 17627853  T
Q  122 gg 123  Q
    ||    
T  17627852 gg 17627851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 493 - 536
Target Start/End: Original strand, 32151900 - 32151943
Alignment:
Q  493 agttcttcgagcaatgggaaacaatcggcaatgagtaacaagtc 536  Q
    |||||||||||||| |||||||||||||||||||| ||||||||    
T  32151900 agttcttcgagcaaagggaaacaatcggcaatgaggaacaagtc 32151943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 17627788 - 17627729
Alignment:
Q  168 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattc 227  Q
    ||||||||| |||||| |||| |||||||| || || ||||| |||||||||||||||||    
T  17627788 ttccatttttatctcattaagtgaaggacatttactaacgagtgaaaacaaggctgattc 17627729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 20477839 - 20477749
Alignment:
Q  143 cactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgag 233  Q
    |||||| |||||| |||| ||| | ||||||||||||||||| ||| |||||||| ||||| || || ||| |||||||| ||||||||||    
T  20477839 cactctctttcccgatagatgtgtattccattttgatctcacaaagtgaaggacagtttctaactagtgaatacaaggctaattctgtgag 20477749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 538
Target Start/End: Original strand, 17205662 - 17205710
Alignment:
Q  490 ttgagttcttcgagcaatgggaaacaatcggcaatgagtaacaagtcat 538  Q
    |||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  17205662 ttgagttctttgagcaaagggaaacaatcggcaatgagtaacaggtcat 17205710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 284
Target Start/End: Original strand, 32267818 - 32267958
Alignment:
Q  144 actctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaa 243  Q
    ||||||||||||||||  ||| | ||||||||||||||||||||| ||||| || ||  | | |||   ||| |||||||||||||| ||| ||||||||    
T  32267818 actctttttcccaatacatgtgtgttccattttgatctcactaagtgaagggcagttcttaaggagaacaaagaaggctgattctgtaagcattgaacaa 32267917  T
Q  244 cgattaaggtttatagaaaccaaatcaccaagaaacaaaga 284  Q
     || | |  ||||||||  |||||||| |||||||| ||||    
T  32267918 tgagtcaaatttatagattccaaatcaacaagaaacgaaga 32267958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 41901433 - 41901390
Alignment:
Q  20 tcaaatcaagcagctgcaaattggggaaaaaggaagctaacatt 63  Q
    |||||||||||||||||||||||||||||| |||||| ||||||    
T  41901433 tcaaatcaagcagctgcaaattggggaaaatggaagcgaacatt 41901390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 300
Target Start/End: Complemental strand, 41889283 - 41889151
Alignment:
Q  168 ttccattttgatctcactaagcgaaggacaatttcttacgagg-gaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaa 266  Q
    ||||||||||||  ||| ||| ||||||||||| |||| || | | ||| || ||||||||||||||  | |||||| |||| | ||||||||| |||||    
T  41889283 ttccattttgataacacaaagtgaaggacaatt-cttaagaagtgcaaagaatgctgattctgtgagtatcgaacaatgattcaagtttatagataccaa 41889185  T
Q  267 atcaccaagaaacaaagagaactcggcaacatgt 300  Q
    ||||||||||||  |||| |||||  ||||||||    
T  41889184 atcaccaagaaatgaagacaactccacaacatgt 41889151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 41889449 - 41889404
Alignment:
Q  20 tcaaatcaagcagctgcaaattggggaaaaaggaagctaacattat 65  Q
    |||||||||| ||||||||||| ||||||| |||||| ||||||||    
T  41889449 tcaaatcaagtagctgcaaattagggaaaatggaagcaaacattat 41889404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 298
Target Start/End: Original strand, 287 - 417
Alignment:
Q  168 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaa 267  Q
    |||||||||||||||| |||| |||||| |||| || ||||| | ||||| || ||| | ||||||| |   |||   | |||| |||||||| ||||||    
T  287 ttccattttgatctcaataagtgaaggataattcctaacgagtgcaaacatggttgagtatgtgagcatgctacattcactaagatttatagacaccaaa 386  T
Q  268 tcaccaagaaacaaagagaactcggcaacat 298  Q
    || |||||||||||||| ||||| |||||||    
T  387 tcgccaagaaacaaagacaactctgcaacat 417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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