View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5811-Insertion-14 (Length: 94)

Name: NF5811-Insertion-14
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5811-Insertion-14
NF5811-Insertion-14
[»] chr8 (33 HSPs)
chr8 (9-94)||(27979612-27979697)
chr8 (14-94)||(27979662-27979742)
chr8 (14-94)||(28036964-28037044)
chr8 (14-94)||(27872247-27872327)
chr8 (9-94)||(27872437-27872522)
chr8 (14-94)||(27872157-27872237)
chr8 (14-94)||(27872202-27872282)
chr8 (14-90)||(27979707-27979783)
chr8 (14-90)||(28037009-28037085)
chr8 (14-93)||(27872487-27872566)
chr8 (14-94)||(27872292-27872372)
chr8 (26-94)||(27885686-27885754)
chr8 (26-90)||(27967599-27967663)
chr8 (26-90)||(28024585-28024649)
chr8 (26-94)||(28036931-28036999)
chr8 (14-94)||(27872400-27872477)
chr8 (26-91)||(27884406-27884471)
chr8 (14-86)||(27872337-27872409)
chr8 (14-65)||(27885719-27885770)
chr8 (9-54)||(27884356-27884401)
chr8 (9-54)||(27885636-27885681)
chr8 (9-54)||(27967549-27967594)
chr8 (9-54)||(28024535-28024580)
chr8 (9-54)||(28036881-28036926)
chr8 (52-94)||(27872393-27872435)
chr8 (14-65)||(27967632-27967683)
chr8 (14-65)||(27979752-27979803)
chr8 (14-65)||(28024618-28024669)
chr8 (14-65)||(28037054-28037105)
chr8 (56-83)||(27967698-27967725)
chr8 (56-83)||(27979818-27979845)
chr8 (56-83)||(28024684-28024711)
chr8 (56-83)||(28037120-28037147)


Alignment Details
Target: chr8 (Bit Score: 66; Significance: 9e-30; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 9e-30
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 27979612 - 27979697
Alignment:
Q  9 ctgggggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtagga 94  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||    
T  27979612 ctgggggactgcctggtggtggtggacttcctggtgtaggatctggtggaggactgcctggtggtggtggacttcctggtgtagga 27979697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 27979662 - 27979742
Alignment:
Q  14 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtagga 94  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  27979662 ggactgcctggtggtggtggacttcctggtgtaggatctggtggaggactgcctggtggtggtggacttcctgttgtagga 27979742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 28036964 - 28037044
Alignment:
Q  14 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtagga 94  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  28036964 ggactgcctggtggtggtggacttcctggtgtaggatctggtggaggactgcctggtggtggtggacttcctgttgtagga 28037044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 9e-27
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 27872247 - 27872327
Alignment:
Q  14 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtagga 94  Q
    |||||||||||||||||||  ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  27872247 ggactgcctggtggtggtggacttcctgttgtaggatctggtggaggactgccttttggtggtggacttcctgttgtagga 27872327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 5e-25
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 27872437 - 27872522
Alignment:
Q  9 ctgggggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtagga 94  Q
    |||| |||||||||||||||||||  ||||||| |||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  27872437 ctggtggactgcctggtggtggtggacttcctgttgtaggatttggtggaggactgccttttggtggtggacttcctgttgtagga 27872522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 27872157 - 27872237
Alignment:
Q  14 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtagga 94  Q
    ||||||||||||||| |||  ||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27872157 ggactgcctggtggtcgtggacttcctaatgtaggatctggtggaggactgcctgttggtggtggacttcctgttgtagga 27872237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 27872202 - 27872282
Alignment:
Q  14 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtagga 94  Q
    |||||||||| ||||||||  ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  27872202 ggactgcctgttggtggtggacttcctgttgtaggatctggtggaggactgcctggtggtggtggacttcctgttgtagga 27872282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 27979707 - 27979783
Alignment:
Q  14 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgt 90  Q
    |||||||||||||||||||  ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||    
T  27979707 ggactgcctggtggtggtggacttcctgttgtaggatctggtggaggactgcctggtggtggtggacttcctgttgt 27979783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 28037009 - 28037085
Alignment:
Q  14 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgt 90  Q
    |||||||||||||||||||  ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||    
T  28037009 ggactgcctggtggtggtggacttcctgttgtaggatctggtggaggactgcctggtggtggtggacttcctgttgt 28037085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 27872487 - 27872566
Alignment:
Q  14 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtagg 93  Q
    |||||||||  ||||||||  ||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||    
T  27872487 ggactgccttttggtggtggacttcctgttgtaggatctggtggaggactgcctggtggtggtggacttcctgttgtagg 27872566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 27872292 - 27872372
Alignment:
Q  14 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtagga 94  Q
    |||||||||  ||||||||  ||||||| |||||||||| ||||||||||||||| || ||||||||||||||||||||||    
T  27872292 ggactgccttttggtggtggacttcctgttgtaggatctagtggaggactgcctggtggtggtggacttcctgttgtagga 27872372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 27885686 - 27885754
Alignment:
Q  26 ggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtagga 94  Q
    |||||||  |||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||    
T  27885686 ggtggtggacttcctggtgtaggatctggtggaggactgcctggtggtggtggacttcctggtgtagga 27885754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 27967599 - 27967663
Alignment:
Q  26 ggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgt 90  Q
    |||||||  |||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  27967599 ggtggtggacttcctggtgtaggatctggtggaggactgcctggtggtggtggacttcctgttgt 27967663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 28024585 - 28024649
Alignment:
Q  26 ggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgt 90  Q
    |||||||  |||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  28024585 ggtggtggacttcctggtgtaggatctggtggaggactgcctggtggtggtggacttcctgttgt 28024649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 28036931 - 28036999
Alignment:
Q  26 ggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtagga 94  Q
    |||||||  |||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||    
T  28036931 ggtggtggacttcctggtgtaggatctggtggaggactgcctggtggtggtggacttcctggtgtagga 28036999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 27872400 - 27872477
Alignment:
Q  14 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtagga 94  Q
    |||||||||||||||||||  ||||||| |||||||||||||   |||||||||| || ||||||||||||||||||||||    
T  27872400 ggactgcctggtggtggtggacttcctgttgtaggatctggt---ggactgcctggtggtggtggacttcctgttgtagga 27872477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 27884406 - 27884471
Alignment:
Q  26 ggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgta 91  Q
    |||||||  |||||||||||||||||||||||||||||||||| || |||||||||||||| ||||    
T  27884406 ggtggtggacttcctggtgtaggatctggtggaggactgcctggtggtggtggacttcctggtgta 27884471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 27872337 - 27872409
Alignment:
Q  14 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctg 86  Q
    |||||||||||||||||||  ||||||| ||||||||||||||||||||||||| ||| ||| ||||| ||||    
T  27872337 ggactgcctggtggtggtggacttcctgttgtaggatctggtggaggactgccttttggtggaggactgcctg 27872409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 27885719 - 27885770
Alignment:
Q  14 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgc 65  Q
    |||||||||||||||||||  ||||||||||||||||||||| |||||||||    
T  27885719 ggactgcctggtggtggtggacttcctggtgtaggatctggtagaggactgc 27885770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 27884356 - 27884401
Alignment:
Q  9 ctgggggactgcctggtggtggtgatcttcctggtgtaggatctgg 54  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||    
T  27884356 ctgggggactgcctggtggtggtggacttcctggtgtaggatctgg 27884401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 27885636 - 27885681
Alignment:
Q  9 ctgggggactgcctggtggtggtgatcttcctggtgtaggatctgg 54  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||    
T  27885636 ctgggggactgcctggtggtggtggacttcctggtgtaggatctgg 27885681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 27967549 - 27967594
Alignment:
Q  9 ctgggggactgcctggtggtggtgatcttcctggtgtaggatctgg 54  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||    
T  27967549 ctgggggactgcctggtggtggtggacttcctggtgtaggatctgg 27967594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 28024535 - 28024580
Alignment:
Q  9 ctgggggactgcctggtggtggtgatcttcctggtgtaggatctgg 54  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||    
T  28024535 ctgggggactgcctggtggtggtggacttcctggtgtaggatctgg 28024580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 28036881 - 28036926
Alignment:
Q  9 ctgggggactgcctggtggtggtgatcttcctggtgtaggatctgg 54  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||    
T  28036881 ctgggggactgcctggtggtggtggacttcctggtgtaggatctgg 28036926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 27872393 - 27872435
Alignment:
Q  52 tggtggaggactgcctgttgttggtggacttcctgttgtagga 94  Q
    ||||||||||||||||| || ||||||||||||||||||||||    
T  27872393 tggtggaggactgcctggtggtggtggacttcctgttgtagga 27872435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 27967632 - 27967683
Alignment:
Q  14 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgc 65  Q
    |||||||||||||||||||  ||||||| ||| ||||||||| |||||||||    
T  27967632 ggactgcctggtggtggtggacttcctgttgttggatctggtagaggactgc 27967683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 27979752 - 27979803
Alignment:
Q  14 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgc 65  Q
    |||||||||||||||||||  ||||||| ||| ||||||||| |||||||||    
T  27979752 ggactgcctggtggtggtggacttcctgttgttggatctggtagaggactgc 27979803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 28024618 - 28024669
Alignment:
Q  14 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgc 65  Q
    |||||||||||||||||||  ||||||| ||| ||||||||| |||||||||    
T  28024618 ggactgcctggtggtggtggacttcctgttgttggatctggtagaggactgc 28024669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 28037054 - 28037105
Alignment:
Q  14 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgc 65  Q
    |||||||||||||||||||  ||||||| ||| ||||||||| |||||||||    
T  28037054 ggactgcctggtggtggtggacttcctgttgttggatctggtagaggactgc 28037105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 83
Target Start/End: Original strand, 27967698 - 27967725
Alignment:
Q  56 ggaggactgcctgttgttggtggacttc 83  Q
    ||||||||||||||||||||||||||||    
T  27967698 ggaggactgcctgttgttggtggacttc 27967725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 83
Target Start/End: Original strand, 27979818 - 27979845
Alignment:
Q  56 ggaggactgcctgttgttggtggacttc 83  Q
    ||||||||||||||||||||||||||||    
T  27979818 ggaggactgcctgttgttggtggacttc 27979845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 83
Target Start/End: Original strand, 28024684 - 28024711
Alignment:
Q  56 ggaggactgcctgttgttggtggacttc 83  Q
    ||||||||||||||||||||||||||||    
T  28024684 ggaggactgcctgttgttggtggacttc 28024711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 83
Target Start/End: Original strand, 28037120 - 28037147
Alignment:
Q  56 ggaggactgcctgttgttggtggacttc 83  Q
    ||||||||||||||||||||||||||||    
T  28037120 ggaggactgcctgttgttggtggacttc 28037147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University