View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5811-Insertion-2 (Length: 802)

Name: NF5811-Insertion-2
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5811-Insertion-2
NF5811-Insertion-2
[»] chr2 (6 HSPs)
chr2 (8-274)||(36141850-36142116)
chr2 (315-583)||(36142158-36142414)
chr2 (622-802)||(36142453-36142633)
chr2 (169-223)||(32592574-32592628)
chr2 (133-179)||(32592642-32592688)
chr2 (168-241)||(5745812-5745885)
[»] chr6 (2 HSPs)
chr6 (142-261)||(1335540-1335659)
chr6 (15-82)||(1335736-1335801)
[»] chr4 (1 HSPs)
chr4 (153-239)||(42404010-42404096)
[»] chr1 (3 HSPs)
chr1 (169-239)||(17603412-17603482)
chr1 (169-229)||(3234043-3234103)
chr1 (169-225)||(42174841-42174897)
[»] chr5 (1 HSPs)
chr5 (169-239)||(16937911-16937981)
[»] chr3 (2 HSPs)
chr3 (169-239)||(20170495-20170565)
chr3 (169-239)||(39980701-39980771)


Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 36141850 - 36142116
Alignment:
Q  8 attcagaagtgctcaccataaaatttaagaatttgactactttaaagtaaagagtctaatggacatacacttttacgctaacatatcttatttgaacgaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36141850 attcagaagtgctcaccataaaatttaagaatttgactactttaaagtaaagagtctaatggacatacacttttacgctaacatatcttatttgaacgaa 36141949  T
Q  108 tctactgacataaatgttgtaagactctatttgtgagagcttataaaaacagcttacgacaattttcataagtcctcaaatattacttataaaaccaaca 207  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36141950 tctactgacataaatgttgtaagactctgtttgcgagagcttataaaaacagcttacgacaattttcataagtccccaaatattacttataaaaccaaca 36142049  T
Q  208 tatagcgtatacaaaaacaattgaacgttattatacatattctttgaatcctaaatattttttggac 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36142050 tatagcgtatacaaaaacaattgaacgttattatacatattctttgaatcctaaatagtttttggac 36142116  T

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Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 315 - 583
Target Start/End: Original strand, 36142158 - 36142414
Alignment:
Q  315 gagtgaataa-cttatatagtactcgcaattttctctcgatccaatttagtacagatacaaaataaactcaaaccaatttaacatttttctactagagac 413  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||     | ||||||||||||||||||| ||||||||||||||||  |||||    
T  36142158 gagtgaataaacttatatagtactcgcaattttctctcgatccaatttaggc---acacaaaataaactcaaaccagtttaacatttttctac--gagac 36142252  T
Q  414 aaattagttcatccgacctgactaagttgggcagagaaaattgcgaggaccaaattgaattttcagtcaatcaatctaattctcaatcacaaagcaatga 513  Q
    |||||||||||||||||| |||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36142253 aaattagttcatccgacccgactaag--------agaaaattgcgaggaccaaattgaattttcagtcaatcaatctaattctcaatcacaaagcaatga 36142344  T
Q  514 aacagtaaacctccacgtcatcaaataggaaaaaactaaggtaaatatgcatccacgtcatcatggagga 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36142345 aacagtaaacctccacgtcatcaaataggaaaaaactaaggtaaatatgcatccacgtcatcatggagga 36142414  T

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Target: chr2; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 622 - 802
Target Start/End: Original strand, 36142453 - 36142633
Alignment:
Q  622 gtggactaagttacatacagtgatcagccatgtcgaaggtagataagccggaatcagcataccggagcatagcttcaacggcgtcgtctcgatcaatcct 721  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36142453 gtggactaagttacatacagtgatcagccatgtcgaaggtagataagccggaatcagcataccggagcatagcttcaacggcgtcgtctcgatcaatcct 36142552  T
Q  722 cccccaaccaccacttgtctgccacattccattaagaactctacatatttccaatgaatcgttcccgttactcagtttcac 802  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36142553 cccccaaccaccacttgtctgccacattccattaagaactctacatatttccaatgaatcgttcccgttactcagtttcac 36142633  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 32592628 - 32592574
Alignment:
Q  169 attttcataagtcctcaaatattacttataaaaccaacatatagcgtatacaaaa 223  Q
    |||||||||||| ||| |||||| ||||||||| |||| ||||||||||||||||    
T  32592628 attttcataagttctccaatattgcttataaaaacaacttatagcgtatacaaaa 32592574  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 32592688 - 32592642
Alignment:
Q  133 tctatttgtgagagcttataaaaacagcttacgacaattttcataag 179  Q
    |||||||| |||| ||||| |||| ||||||||||||||||||||||    
T  32592688 tctatttgggagaacttatgaaaatagcttacgacaattttcataag 32592642  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 5745812 - 5745885
Alignment:
Q  168 aattttcataagtcctcaaatattacttataaaaccaacatatagcgtatacaaaaacaattgaacgttattat 241  Q
    ||||||| |||||||||||||||  |||||| ||  ||| |||||| |||| |||||||||| | |||||||||    
T  5745812 aattttcctaagtcctcaaatatagcttatagaaataacttatagcatataaaaaaacaattcagcgttattat 5745885  T

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Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 142 - 261
Target Start/End: Complemental strand, 1335659 - 1335540
Alignment:
Q  142 gagagcttataaaaacagcttacgacaattttcataagtcctcaaatattacttataaaaccaacatatagcgtatacaaaaacaattgaacgttattat 241  Q
    ||||||||| |||| |||| || ||||||||||||||||||||||| || | ||||||||| ||||||||| || || ||||||||| ||| |||||| |    
T  1335659 gagagcttacaaaagcagcctatgacaattttcataagtcctcaaagataatttataaaacgaacatatagtgtgtaaaaaaacaatcgaatgttattgt 1335560  T
Q  242 acatattctttgaatcctaa 261  Q
    |||||||||| |||||||||    
T  1335559 acatattcttcgaatcctaa 1335540  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 1335801 - 1335736
Alignment:
Q  15 agtgctcaccataaaatttaagaatttgactactttaaagtaaagagtctaatggacatacactttta 82  Q
    ||||||||||| ||||| |||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  1335801 agtgctcaccacaaaatataagaatttgactactt--aagtaaagagtccaatggacatacactttta 1335736  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 42404010 - 42404096
Alignment:
Q  153 aaaacagcttacgacaattttcataagtcctcaaatattacttataaaaccaacatatagcgtatacaaaaacaattgaacgttatt 239  Q
    ||||||||||| |||||||||||||||  |||||||||  ||||||||| || | || ||| | ||||||||||||| ||| |||||    
T  42404010 aaaacagcttatgacaattttcataagcactcaaatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattatt 42404096  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 17603412 - 17603482
Alignment:
Q  169 attttcataagtcctcaaatattacttataaaaccaacatatagcgtatacaaaaacaattgaacgttatt 239  Q
    ||||||| |||| ||| |||||  ||||||||| |||| |||||| ||||||||||||||| |||||||||    
T  17603412 attttcagaagttctccaatatagcttataaaaacaacttatagcatatacaaaaacaatttaacgttatt 17603482  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 3234043 - 3234103
Alignment:
Q  169 attttcataagtcctcaaatattacttataaaaccaacatatagcgtatacaaaaacaatt 229  Q
    |||||||||||| ||| |||||  ||||||||| |||| |||||| |||||||||||||||    
T  3234043 attttcataagttctccaatatagcttataaaaacaacttatagcatatacaaaaacaatt 3234103  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 42174897 - 42174841
Alignment:
Q  169 attttcataagtcctcaaatattacttataaaaccaacatatagcgtatacaaaaac 225  Q
    |||||||||||| ||| ||||| |||||||||| |||| |||||| |||||||||||    
T  42174897 attttcataagttctccaatataacttataaaaacaacttatagcatatacaaaaac 42174841  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 16937911 - 16937981
Alignment:
Q  169 attttcataagtcctcaaatattacttataaaaccaacatatagcgtatacaaaaacaattgaacgttatt 239  Q
    |||||| ||||| ||| |||||  | ||||||| |||| |||||| ||||||||||||||| |||||||||    
T  16937911 attttcctaagttctccaatatagcgtataaaaacaacttatagcatatacaaaaacaatttaacgttatt 16937981  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 20170565 - 20170495
Alignment:
Q  169 attttcataagtcctcaaatattacttataaaaccaacatatagcgtatacaaaaacaattgaacgttatt 239  Q
    |||||||| ||| |||||| || |||| ||||| |||| |||||| ||||||||||||||| ||| |||||    
T  20170565 attttcattagttctcaaaaataacttgtaaaaacaacttatagcatatacaaaaacaatttaacattatt 20170495  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 39980771 - 39980701
Alignment:
Q  169 attttcataagtcctcaaatattacttataaaaccaacatatagcgtatacaaaaacaattgaacgttatt 239  Q
    |||||||||||| ||| |||||  ||||||||| |||| |||||| | | ||||||||||| |||||||||    
T  39980771 attttcataagttctccaatatagcttataaaaacaacttatagcatgttcaaaaacaatttaacgttatt 39980701  T

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