View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811-Insertion-4 (Length: 790)
Name: NF5811-Insertion-4
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 637; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 9 - 655
Target Start/End: Original strand, 35022204 - 35022850
Alignment:
| Q |
9 |
ggaatcgcgctttttcaagaacatccgtttaacttccgtgacgatttcactaccggagttcgttataaaaacctctttgatattatggttgatgctgtgg |
108 |
Q |
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| T |
35022204 |
ggaatcgcgctttttcaagaacatccgtttaacttccgtgacgatttcactaccggagttcgttataaaaacctctttgatattatggttgatgctgtgg |
35022303 |
T |
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| Q |
109 |
tttcagcaatggcgctggaaggttacgaaacgattccggtgattgttacggaaaccggttggcctagctctggaagtgagcttgatgcgaattcggctta |
208 |
Q |
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| T |
35022304 |
tttcagcaatggcgctggaaggttacgaaacgattccggtgattgttacagaaaccggttggcctagctctggaagtgagcttgatgcgaattcggctta |
35022403 |
T |
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| Q |
209 |
tgcagagatttatctgaagggattggtgaagcatttgaagtccggtgccggaacgccattgttgaaagatggagtgaaaggggtttatctgtatgaattg |
308 |
Q |
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| T |
35022404 |
tgcagagatttatctgaagggattggtgaagcatttgaagtccggtgccggaacgccattgttgaaagatggagtgaaaggggtttatctgtatgaattg |
35022503 |
T |
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| Q |
309 |
tttgataaggaaggtgctggaaatggaaggaattgggggattttgtatccgaatggttcgacaaagtatgataagattgatttctcttctggatggaaaa |
408 |
Q |
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| T |
35022504 |
tttgataaggaaggtgctggaaatggaaggaattgggggattttgtatccgaatggttcgacaaagtatgataagattgatttctcttctggatggaaaa |
35022603 |
T |
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| Q |
409 |
gattggtgaatgtgggtttcattttgttgctgattgttcttcaggtttgttgttgattagctctgttttagtgttaatgttgtttaagtttygatgttta |
508 |
Q |
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| T |
35022604 |
gattggtgaatgtgggtttcattttgttgctgattgttcttcaggtttgttgttgattagctctgttttagtgttaatgttgtttaagttttgatgttta |
35022703 |
T |
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| Q |
509 |
gtgataatgattagttaattgggttttaagatttgtaattagattggtttatgaaaccaacaggaacagaaagtttgtattcttctgtagagaactattg |
608 |
Q |
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| T |
35022704 |
gtgataatgattagttaattgggttttaagatttgtaattagattggtttatgaaaccaacagaaacagaaagtttgtattcttctgtagagaactattg |
35022803 |
T |
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| Q |
609 |
tgaattgtgtttgagttaatgactcaatgaagcttgaattcagattc |
655 |
Q |
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| T |
35022804 |
tgaattgtgtttgagttaatgactcaatgaagcttgaattcagattc |
35022850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 720 - 790
Target Start/End: Original strand, 35022915 - 35022985
Alignment:
| Q |
720 |
atgaaaatgatttctttggaaactgctaaatttgtgtaaattagatgtgtggttttaaataaattctgcgg |
790 |
Q |
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| T |
35022915 |
atgaaaatgatttctttggaaactgctaaatttgtgtaaattagatgtgtggttttaaataaattctgcgg |
35022985 |
T |
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