View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5811-Insertion-5 (Length: 630)

Name: NF5811-Insertion-5
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5811-Insertion-5
NF5811-Insertion-5
[»] chr1 (4 HSPs)
chr1 (459-630)||(50651257-50651428)
chr1 (161-238)||(50650959-50651036)
chr1 (327-408)||(50651125-50651206)
chr1 (27-77)||(50650818-50650868)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 9e-78; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 459 - 630
Target Start/End: Original strand, 50651257 - 50651428
Alignment:
Q  459 aaaatcacactcggatatattgcaattgccattttggttgaacgggttgaagcatagttggctcaacaaatatttatttttatttccnnnnnnnnataat 558  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||    
T  50651257 aaaatcacactcggatatattgcaattgccattttggttgaacgggttgaagcatagttggctcaacaaatatttatttttatttcctttttttaataat 50651356  T
Q  559 atttggcattgattgagaagataattctgtcaaatcccagctcaatactccacaaaaatgcatctaacaaag 630  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50651357 atttggcattgattgagaagataattctgtcaaatcccagctcaatactccacaaaaatgcatctaacaaag 50651428  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 50650959 - 50651036
Alignment:
Q  161 taagtagaaatcaaacttgataaatttataagtttataacgcacaaagtaaccactcgtgcttgatgaggcaataaac 238  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50650959 taagtagaaatcaaacttaataaatttataagtttataacgcacaaagtaaccacttgtgcttgatgaggcaataaac 50651036  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 327 - 408
Target Start/End: Original strand, 50651125 - 50651206
Alignment:
Q  327 ggatactttaagaataattgtaatttatgtgcaatgnnnnnnngacatagacaattgttttaacgcttagataatacaagca 408  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| ||||||||||||||    
T  50651125 ggatactttaagaataattgtaatttatgtgcaatgtttttttgacatagacaattgttttaacgctcagataatacaagca 50651206  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 50650818 - 50650868
Alignment:
Q  27 ataaactggtcaatttcttaaaataacattttataaacaagacataaaact 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50650818 ataaactggtcaatttcttaaaataacattttataaacaagacataaaact 50650868  T

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