View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811-Insertion-8 (Length: 362)
Name: NF5811-Insertion-8
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811-Insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 13885655 - 13885340
Alignment:
| Q |
8 |
attcatagcaatatcaaaacatctcgttttgaaaaagagtacaagaaggaattgtcatcaaataggtctaacataccacctgccaacaacacataagtcc |
107 |
Q |
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| T |
13885655 |
attcgtagcaatatcaaaacatctcgttttgaaaaagagtacaagaaggaattgtcatcaaataggtctaacataccacctg------------aagtct |
13885568 |
T |
|
| Q |
108 |
cactatcggaggaacatgaagaggaagttcgcgacattgtcgaagtttctcaaccatcttctgtttcgccaccaattctcactgattcaatactgttcgg |
207 |
Q |
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| T |
13885567 |
cactatcggaggaatgtgaagaggaagttcacgacattgtcgaagtttctcaaccatcttctgtttcaacggcaattctcattgaatcaatactgctcgg |
13885468 |
T |
|
| Q |
208 |
caaaggtgacattgaaaattcacaaggtgattcccaacgatctctgataccagcaaaacatgtagaagataatgaaattgttgaagattctgaggaatct |
307 |
Q |
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| T |
13885467 |
ca---------ttgaaaattcacagggtgattcccaacaatctcggatcccagcaaaacatgtagaagataatgaaattgttgaagattctgaggaatct |
13885377 |
T |
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| Q |
308 |
ttcatttgtaaacaacaaacgccgtggtgaaaattca |
344 |
Q |
| |
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|||| ||||||||||||||||||| ||| ||| |||| |
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| T |
13885376 |
ttcagttgtaaacaacaaacgccgaggtcaaacttca |
13885340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 29092079 - 29092162
Alignment:
| Q |
8 |
attcatagcaatatcaaaacatctcgttttgaaaaagagtacaagaaggaattgtcatcaaataggtctaacataccacctgcc |
91 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| || |||||| |
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| T |
29092079 |
attcatagcaatatcaaaacatctcgtttcgaaaaagagtacaagaaggaattgtcatcaaatagatctatcatgcctcctgcc |
29092162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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