View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811-Insertion-9 (Length: 348)
Name: NF5811-Insertion-9
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811-Insertion-9 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 344
Target Start/End: Original strand, 34741445 - 34741782
Alignment:
| Q |
8 |
aaaagtttcaccaacacagttacaacatagaccaactaaaagatcagaaggctgatcacataag----actaaaaataagaaataaatagaaaatagaac |
103 |
Q |
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| T |
34741445 |
aaaagtttcaccaacacagttacaacatagaccaactaagagattagaaggctgatcacataagtaagactaaaaataagaaataaatagaaaatagaac |
34741544 |
T |
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| Q |
104 |
ttttgttcattcaaaacttgcagcaaaaattgcaaagaatattgctttattcatgtatcgtttgatctatatgattgttgcaataaagagaatggtgact |
203 |
Q |
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| T |
34741545 |
ttttgttcattcaaaacttgcagcaaaaattgcaaagaatattgctttattcatgtatcgtttgatctatatgattgttgcaataaaaagaatggtgact |
34741644 |
T |
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| Q |
204 |
tcaatttgatannnnnnnngactcaaaatacaaa-ttagggctagatacaaatcaaattcataatgcctctgatttgattgcttctcgatgccacaatcc |
302 |
Q |
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| T |
34741645 |
tcaatttgatattttttgtgactcaaaaaaaaaaattagggctagatacaaatcaaattcataatgcctctgatttgattgcttctcgatgccacaatcc |
34741744 |
T |
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| Q |
303 |
acatgttgataattctcatagcaattaatcaaattcccttac |
344 |
Q |
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| T |
34741745 |
acatgtagataattctcatagcaat----caaattcccttac |
34741782 |
T |
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