View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_high_17 (Length: 429)
Name: NF5811_high_17
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 419
Target Start/End: Complemental strand, 33701289 - 33700877
Alignment:
| Q |
19 |
tgaagatcaatctactaaaat----ggagtttctaaatttattttttcttttgttgaatagaaaggaaaatgtttgatatacatcttggtataaagagaa |
114 |
Q |
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| T |
33701289 |
tgaagatcaatctactaaaataaatggagtttctaaatttattttttcttttgttgaatagaaaggaaaatgtttgatatacatcttggtataaagagaa |
33701190 |
T |
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| Q |
115 |
aaaac--tgtgacgaggtagatataataggttggtataatgtgacatgaaggaagaaatatagagaaaatgaaacgttgaatgtttaataagttgcttat |
212 |
Q |
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| T |
33701189 |
aaaacagtgtgacgaggtagatataataggttggtataatgtgacatgaaggaagaaatatagataaaatgaaacgttgaatgtttaataggttgcttat |
33701090 |
T |
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| Q |
213 |
atagtcatgcatgactatttaagcaaaa---------cnnnnnnnnnnnnnngggttgaaaaataaatttaacaaggtctcattccttctaaggagatat |
303 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33701089 |
atagtcatgcatgactatttaagcaaaactattttttctgttttttttttttgggttgaaaaataaatttaacaaggtctcattccttctaaggagatat |
33700990 |
T |
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| Q |
304 |
tgtctatgagatacgaacatagacattagacacacaaacatgaatgtaaatacatgtgtcggtgtcgtgtttaagccacgctcttgttgtcttttgcttg |
403 |
Q |
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|||||||||||||||||||| || | ||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
33700989 |
tgtctatgagatacgaacatggagac---acacacaaacatgaatgtaaacacatgtgtcagtgtcgtgtttaagccacgttcttgttgtcttttgcttg |
33700893 |
T |
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| Q |
404 |
agactttttgcctatg |
419 |
Q |
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| T |
33700892 |
agagtttttgcctatg |
33700877 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 23851496 - 23851529
Alignment:
| Q |
344 |
tgaatgtaaatacatgtgtcggtgtcgtgtttaa |
377 |
Q |
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| T |
23851496 |
tgaatgtaaacacatgtgtcggtgtcgtgtttaa |
23851529 |
T |
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