View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_high_18 (Length: 425)
Name: NF5811_high_18
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 29465530 - 29465114
Alignment:
| Q |
1 |
caatgatctattatcgcatcatttcatgagtctgataaattatgtttaaacaagtgaatatgcaaattggttcgaaattgtaagcaaagctcaaataatc |
100 |
Q |
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| T |
29465530 |
caatgatctattatcgcatcatttcatgagtctgataaattatgtttaaacaagtgaatatacaaattggttcaaaattgtaagcaaagctcaaataatc |
29465431 |
T |
|
| Q |
101 |
tcttatgtcattcaagattattcatttgttaagttctatcgttagagactatgatgtgatatgttaactggacatgttacattgcttgttgatgttacat |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29465430 |
tcttatgtcattcaagattaatcatttgttaagttctatcgttagagactatgatgtaatatgttaactggacatgttacattgcttgttgatgttacat |
29465331 |
T |
|
| Q |
201 |
caatactagctcaaaagcgacaaatgtttctatgaaatttaggtcatttcagagacaaatttgcaggcagttacaattgtgcatgaactaactaccatca |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29465330 |
caatacgagctcaaaagcgacaaatgtttctatgaaatttaggtcatttcagagacaaatttgcaggcagttacaattgtgcatgaactaactactatca |
29465231 |
T |
|
| Q |
301 |
aattagtccatgaaagcgtaagtttcatagacaaattaatctcgtgtaatgatattgatatgggatcaacgtggaaggattgcatattcgacaaacatat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29465230 |
aattagtccatgaaagcgtaagtttcatagacaaattaatctcgtgtaatgatattgatgtgggatcaacgtggaaggattgcatattcgacaaacatat |
29465131 |
T |
|
| Q |
401 |
catatcataaaccgtaa |
417 |
Q |
| |
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| T |
29465130 |
cacatcataaaccgtaa |
29465114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 22602464 - 22602531
Alignment:
| Q |
137 |
tatcgttagagactatgatgtgatatgttaactggacatgttacattgcttgttgatgttacatcaat |
204 |
Q |
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|||| |||||| ||||||||||| ||||||||||||||||| ||||||| |||||| | |||||||| |
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| T |
22602464 |
tatctttagaggctatgatgtgacatgttaactggacatgtcacattgcacgttgatctcacatcaat |
22602531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 23693525 - 23693472
Alignment:
| Q |
140 |
cgttagagactatgatgtgatatgttaactggacatgttacattgcttgttgat |
193 |
Q |
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|||||||| ||||||||||| ||| |||||| |||||| ||||||| ||||||| |
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| T |
23693525 |
cgttagagtctatgatgtgacatgctaactgaacatgtcacattgcgtgttgat |
23693472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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