View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_high_29 (Length: 364)
Name: NF5811_high_29
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 350
Target Start/End: Original strand, 2590345 - 2590690
Alignment:
| Q |
11 |
agaatattgctagaataaagttgatggaacgtcactttagggttagatggagatatgggtcctacatgcaggttgtaaatgtcgacttcagttccctcag |
110 |
Q |
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| T |
2590345 |
agaaaattgctagaataaagttgatggaacgtcactttagggttagatggagatatgggtcctacatgcaggttgtaaatgtcgacttcagttccctcag |
2590444 |
T |
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| Q |
111 |
ttttaaaagaaggaaagatagaaagagaaagagataactattgcattgc------acttgcacttgcacacatacactgatatatgaatgaaggtacaat |
204 |
Q |
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| T |
2590445 |
ttttaaaagaaggaaagatagaaagagaaagagataactattgcattgcacttgcacttgcacttgcacacatacactgatatatgaatgaaggtacaat |
2590544 |
T |
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| Q |
205 |
ttactaaacaaaaagagacaggaatagaacaagagaaagatgggtcaccattcatgctgtaatcaacagaaggttaagagaggcctttggtcacctgaag |
304 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2590545 |
ttactaaacaaaaagagacaggcatagaacaagagaaagatgggtcaccattcatgctgtaatcaacagaaggttaagagaggcctttggtcacctgaag |
2590644 |
T |
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| Q |
305 |
aagatgagaaactcattagatacattactactcatggttatggttg |
350 |
Q |
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| T |
2590645 |
aagatgagaaactcattagatacattactactcatggttatggttg |
2590690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 244 - 347
Target Start/End: Complemental strand, 41351654 - 41351551
Alignment:
| Q |
244 |
atgggtcaccattcatgctgtaatcaacagaaggttaagagaggcctttggtcacctgaagaagatgagaaactcattagatacattactactcatggtt |
343 |
Q |
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| T |
41351654 |
atgggtcagcattcttgctgcaatcaacagaaggttaagagaggtctttggtcccctgaagaagatgaaaaactcatcacttacattaccactcatggct |
41351555 |
T |
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| Q |
344 |
atgg |
347 |
Q |
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|||| |
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| T |
41351554 |
atgg |
41351551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 5921496 - 5921445
Alignment:
| Q |
269 |
aacagaaggttaagagaggcctttggtcacctgaagaagatgagaaactcat |
320 |
Q |
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| T |
5921496 |
aacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcat |
5921445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 5949388 - 5949337
Alignment:
| Q |
269 |
aacagaaggttaagagaggcctttggtcacctgaagaagatgagaaactcat |
320 |
Q |
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| T |
5949388 |
aacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcat |
5949337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 5960654 - 5960603
Alignment:
| Q |
269 |
aacagaaggttaagagaggcctttggtcacctgaagaagatgagaaactcat |
320 |
Q |
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| T |
5960654 |
aacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcat |
5960603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 5984916 - 5984865
Alignment:
| Q |
269 |
aacagaaggttaagagaggcctttggtcacctgaagaagatgagaaactcat |
320 |
Q |
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| T |
5984916 |
aacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcat |
5984865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 5843420 - 5843363
Alignment:
| Q |
272 |
agaaggttaagagaggcctttggtcacctgaagaagatgagaaactcattagatacat |
329 |
Q |
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| T |
5843420 |
agaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacat |
5843363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 5850162 - 5850105
Alignment:
| Q |
272 |
agaaggttaagagaggcctttggtcacctgaagaagatgagaaactcattagatacat |
329 |
Q |
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||||||| || ||||| || |||||||||||||||||||| |||||||| | |||||| |
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| T |
5850162 |
agaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacat |
5850105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 42789183 - 42789122
Alignment:
| Q |
259 |
tgctgtaatcaacagaaggttaagagaggcctttggtcacctgaagaagatgagaaactcat |
320 |
Q |
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||||| ||| |||||||||| || ||||| || |||||||| ||||||||||| |||||||| |
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| T |
42789183 |
tgctgcaataaacagaaggtgaaaagaggactatggtcaccagaagaagatgaaaaactcat |
42789122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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