View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5811_high_30 (Length: 359)
Name: NF5811_high_30
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_high_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 7859024 - 7858688
Alignment:
| Q |
15 |
ataaactacaccaatatgttactgttttccgattgttgttgcattttttcacacaacaataaattaagggccctctattatgtcgttacttttttacaat |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7859024 |
ataaactacaccaatgtgttactgttttccgattgttgttgcattttttcacacaacaataaattaagggccctctattatgtcgttacttttttacaat |
7858925 |
T |
|
| Q |
115 |
cgacctaccttttaatctaataaacaaaatctccaataggaggtctctcttatcattcttagcttagttttaagagattaatttgggtttgtcatttgaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7858924 |
cgacctaccttttaatctaataaacaaaatctccaataggaggtctctcttatcattcttagcttagttttaagagattaatttgggtttgtcatttgaa |
7858825 |
T |
|
| Q |
215 |
tctttattatctacctagtggaaaatgacttctatgacaagcagacagttaacgatgttcaaaagaataaatcaatttcatgaaagcagcacttgaaagt |
314 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7858824 |
tctctattatctacctagtggaaaatgacttctatgacaagcagctagttaacgatgttcaaaagaataaatcaatttcatgaaagcagcacttgaaatt |
7858725 |
T |
|
| Q |
315 |
acttaaataattcaaaataagatttattgatattctt |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7858724 |
acttaaataattcaaaataagatttattgatattctt |
7858688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University