View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_high_34 (Length: 348)
Name: NF5811_high_34
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 192 - 341
Target Start/End: Complemental strand, 10578502 - 10578353
Alignment:
| Q |
192 |
tgagattgtttaatctgatgatttttcatatcaggatcaaggaggttgagcattagcttttgtgggtatataatcattttatttgatttgattcctgnnn |
291 |
Q |
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| T |
10578502 |
tgagattgtttaatctgatgatttttcatatcaggatcaaggaggttgagcattagcttttgtgggtatataatcattttatttgatttgattcctgttt |
10578403 |
T |
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| Q |
292 |
nnnnnnnnnggattaatgattcctcttgtttaaattgttattgatgatgt |
341 |
Q |
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| T |
10578402 |
ttattttttggattaatgattcctcttgtttaaattgttattgttgatgt |
10578353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 10578667 - 10578591
Alignment:
| Q |
19 |
agtgacgctattggattcactctttcacataaggtatcgctctatgaaatttgtttcatctttcaatcctcaaaaag |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10578667 |
agtgacgctattggattcactctttcacataaggtatcgctctacgaaatttgtttcatctttcaatcctcaaaaag |
10578591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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