View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5811_high_38 (Length: 343)

Name: NF5811_high_38
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5811_high_38
NF5811_high_38
[»] chr6 (22 HSPs)
chr6 (8-325)||(33285123-33285440)
chr6 (210-325)||(28870331-28870446)
chr6 (190-325)||(9166472-9166607)
chr6 (191-325)||(33644702-33644836)
chr6 (190-325)||(33304195-33304330)
chr6 (206-325)||(33387881-33388000)
chr6 (207-325)||(33057306-33057424)
chr6 (210-325)||(33262357-33262472)
chr6 (194-325)||(31562986-31563117)
chr6 (210-325)||(33409709-33409824)
chr6 (190-263)||(33358644-33358717)
chr6 (29-100)||(33271375-33271446)
chr6 (206-325)||(33398799-33398918)
chr6 (266-325)||(33271582-33271641)
chr6 (43-100)||(33644942-33644999)
chr6 (61-125)||(33358500-33358564)
chr6 (61-125)||(33387739-33387803)
chr6 (25-100)||(33304027-33304102)
chr6 (25-91)||(9166292-9166358)
chr6 (190-236)||(33271515-33271561)
chr6 (40-101)||(33409530-33409591)
chr6 (61-93)||(31563224-31563256)
[»] scaffold1408 (1 HSPs)
scaffold1408 (190-325)||(355-490)
[»] scaffold0428 (1 HSPs)
scaffold0428 (190-325)||(6101-6236)
[»] chr4 (4 HSPs)
chr4 (185-325)||(31499217-31499357)
chr4 (200-325)||(31472712-31472837)
chr4 (200-321)||(31479174-31479295)
chr4 (190-324)||(31156934-31157068)
[»] chr2 (1 HSPs)
chr2 (190-325)||(17441030-17441159)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 325
Target Start/End: Original strand, 33285123 - 33285440
Alignment:
Q  8 ccaagaatataacagctgattttttcaaacttatcataggactctctagagaggtagattatccatagatgacttgatttggtcgtaataagatatctct 107  Q
    |||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33285123 ccaacaatgtaacaactgattttttcaaatttatcataggactctctagagaggtagattatccatagatgacttgatttggtcgtaataagatatctct 33285222  T
Q  108 taagaattactggaacacaaaaggaagaaagagaatcaataaccaattttatatcggctatccatggaaggatctcttgattaggtgccacggaaaacac 207  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33285223 taagaattactggaacactaaaggaagaaagagaatcaataaccaattttatatcggctatccacggaaggatctcttgattaggtgccacggaaaacac 33285322  T
Q  208 tgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctctgattgttaatccaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33285323 tgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagatctgtctattggtattgaactacccacgctctgattattaatccaa 33285422  T
Q  308 cttggtatttcacttcct 325  Q
    ||||||||||||||||||    
T  33285423 cttggtatttcacttcct 33285440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 28870446 - 28870331
Alignment:
Q  210 cacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctctgattgttaatccaact 309  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||  ||||||| ||||||||| ||||| |||||||||||||||||||||    
T  28870446 cacaacatacaaagccaatgatattattgttattgtcatttataataggagattcgtctatttgtattgaaccacccatgctctgattgttaatccaact 28870347  T
Q  310 tggtatttcacttcct 325  Q
    ||||||||||||||||    
T  28870346 tggtatttcacttcct 28870331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 9166472 - 9166607
Alignment:
Q  190 aggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacg 289  Q
    |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |  |||||||||||| |||| | |||||    
T  9166472 aggtgccatggagaatactgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagttaggtctattggtatcgaaccatccacg 9166571  T
Q  290 ctctgattgttaatccaacttggtatttcacttcct 325  Q
    ||| ||||||| |||||||||||||||||| |||||    
T  9166572 ctccgattgttgatccaacttggtatttcaattcct 9166607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 33644836 - 33644702
Alignment:
Q  191 ggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgc 290  Q
    ||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||  ||||||| ||||||||  |||||| |    
T  33644836 ggtgccatggtaaatactgcacaacatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaataacccacac 33644737  T
Q  291 tctgattgttaatccaacttggtatttcacttcct 325  Q
    | |||||||| ||||||||||||||||||||||||    
T  33644736 tttgattgttgatccaacttggtatttcacttcct 33644702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 33304195 - 33304330
Alignment:
Q  190 aggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacg 289  Q
    |||||||| |||||| || |||||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||| ||||||||  |||||||    
T  33304195 aggtgccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacg 33304294  T
Q  290 ctctgattgttaatccaacttggtatttcacttcct 325  Q
    |||| |||||| |||||| ||||||||||| |||||    
T  33304295 ctcttattgttgatccaaattggtatttcatttcct 33304330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 206 - 325
Target Start/End: Original strand, 33387881 - 33388000
Alignment:
Q  206 actgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctctgattgttaatcc 305  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||  || |||||||| ||||||||  ||||| |||||||||||| ||||    
T  33387881 actgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttgatcc 33387980  T
Q  306 aacttggtatttcacttcct 325  Q
    |||| |||||||||||||||    
T  33387981 aactcggtatttcacttcct 33388000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 33057306 - 33057424
Alignment:
Q  207 ctgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctctgattgttaatcca 306  Q
    |||||||||||||||  |||||||||||||||| |||||||| | |||||||||||| |||||||| |||||||  |||||  ||||||||||| |||||    
T  33057306 ctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagatcggtctattgctattgaataacccatcctctgattgttgatcca 33057405  T
Q  307 acttggtatttcacttcct 325  Q
    |||||||||||||||||||    
T  33057406 acttggtatttcacttcct 33057424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 33262357 - 33262472
Alignment:
Q  210 cacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctctgattgttaatccaact 309  Q
    ||||||||| |||||||||||||||||||||||| |||| ||||||||||| |  ||||| ||||||||||  ||||| |||||||||||| ||||||||    
T  33262357 cacaacatagaaagccaatgatattattgttattatcatgcataataggagtttggtctactggtattgaatcacccatgctctgattgttgatccaact 33262456  T
Q  310 tggtatttcacttcct 325  Q
    |||||||||| |||||    
T  33262457 tggtatttcatttcct 33262472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 194 - 325
Target Start/End: Complemental strand, 31563117 - 31562986
Alignment:
Q  194 gccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctct 293  Q
    ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||| ||||  ||||||    |||||||||||||||  ||||| ||| |    
T  31563117 gccacggaaaatactgcacaacatacaaagccaatgatatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctat 31563018  T
Q  294 gattgttaatccaacttggtatttcacttcct 325  Q
    ||||||| |||||| | |||||||||||||||    
T  31563017 gattgttgatccaattcggtatttcacttcct 31562986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 33409709 - 33409824
Alignment:
Q  210 cacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctctgattgttaatccaact 309  Q
    |||||| |||||||||||| |||||||||||||||||||  |||| |||||||   || |||| |||||||  |||||||||||||||||| ||||||||    
T  33409709 cacaacttacaaagccaataatattattgttattgtcatttataacaggagattcatcaattgatattgaagcacccacgctctgattgttgatccaact 33409808  T
Q  310 tggtatttcacttcct 325  Q
    ||||||||||||||||    
T  33409809 tggtatttcacttcct 33409824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 33358644 - 33358717
Alignment:
Q  190 aggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatc 263  Q
    ||||| || |||||| ||||||||||||||||| ||||||| ||||||||||||||||| | ||||||||||||    
T  33358644 aggtgtcatggaaaatactgcacaacatacaaaaccaatgacattattgttattgtcatgcctaataggagatc 33358717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 33271375 - 33271446
Alignment:
Q  29 ttttcaaacttatcataggactctctagagaggtagattatccatagatgacttgatttggtcgtaataaga 100  Q
    |||||||| |||||||||||| ||| || |||| |||| |||||||| ||||||||||||||||||||||||    
T  33271375 ttttcaaatttatcataggaccctcgagggaggaagatcatccataggtgacttgatttggtcgtaataaga 33271446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 325
Target Start/End: Original strand, 33398799 - 33398918
Alignment:
Q  206 actgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctctgattgttaatcc 305  Q
    ||||||||||||||||||  |  | | | ||||||||| |||| ||||  |||||||  ||||||| ||||||||  |||||| | ||||||||| ||||    
T  33398799 actgcacaacatacaaagtaatggctctgattgttattatcatgcatagcaggagataggtctatttgtattgaatcacccacacactgattgttgatcc 33398898  T
Q  306 aacttggtatttcacttcct 325  Q
    ||||||||||||||||||||    
T  33398899 aacttggtatttcacttcct 33398918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 33271582 - 33271641
Alignment:
Q  266 tctattggtattgaactacccacgctctgattgttaatccaacttggtatttcacttcct 325  Q
    ||||||||||| |||  ||||| |||||||||||| ||||||||||||||||||||||||    
T  33271582 tctattggtatcgaatcacccatgctctgattgttgatccaacttggtatttcacttcct 33271641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 33644999 - 33644942
Alignment:
Q  43 ataggactctctagagaggtagattatccatagatgacttgatttggtcgtaataaga 100  Q
    |||||| |||| || || ||||||||||||||| ||||||||||||||||||||||||    
T  33644999 ataggaatctcgagggaagtagattatccataggtgacttgatttggtcgtaataaga 33644942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 33358500 - 33358564
Alignment:
Q  61 gtagattatccatagatgacttgatttggtcgtaataagatatctcttaagaattactggaacac 125  Q
    |||||||||||| || ||||||||||||| ||||||||||  ||  || ||||||||||||||||    
T  33358500 gtagattatccacaggtgacttgatttgggcgtaataagacctccattgagaattactggaacac 33358564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 33387739 - 33387803
Alignment:
Q  61 gtagattatccatagatgacttgatttggtcgtaataagatatctcttaagaattactggaacac 125  Q
    ||||||||||||||| ||||||||||||||||||| ||||  ||  || ||||| ||||||||||    
T  33387739 gtagattatccataggtgacttgatttggtcgtaacaagacctccattgagaatgactggaacac 33387803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 33304027 - 33304102
Alignment:
Q  25 gattttttcaaacttatcataggactctctagagaggtagattatccatagatgacttgatttggtcgtaataaga 100  Q
    |||||||||||| | |  |||||||||||  | || ||||||||||||||| ||||||||||||||| ||| ||||    
T  33304027 gattttttcaaattcactataggactctcgggggaagtagattatccataggtgacttgatttggtcataacaaga 33304102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 9166292 - 9166358
Alignment:
Q  25 gattttttcaaacttatcataggactctctagagaggtagattatccatagatgacttgatttggtc 91  Q
    ||||||| |||| | ||| ||||||||||  | |||||||||||||||||| ||||| |||||||||    
T  9166292 gatttttccaaattcatcgtaggactctcgggggaggtagattatccataggtgactggatttggtc 9166358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 33271515 - 33271561
Alignment:
Q  190 aggtgccacggaaaacactgcacaacatacaaagccaatgatattat 236  Q
    ||||||||||||||| ||| |||| ||||||||||||||| ||||||    
T  33271515 aggtgccacggaaaatactacacagcatacaaagccaatggtattat 33271561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 33409530 - 33409591
Alignment:
Q  40 atcataggactctctagagaggtagattatccatagatgacttgatttggtcgtaataagat 101  Q
    ||||||||||||||  | || ||||| || |||||| |||||||||||||| ||||||||||    
T  33409530 atcataggactctcgggggaagtagactagccataggtgacttgatttggttgtaataagat 33409591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 31563256 - 31563224
Alignment:
Q  61 gtagattatccatagatgacttgatttggtcgt 93  Q
    ||||||||||||||| |||||||||||||||||    
T  31563256 gtagattatccataggtgacttgatttggtcgt 31563224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 355 - 490
Alignment:
Q  190 aggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacg 289  Q
    |||||||| | |||| ||||||||| |||||||||||||||||||||| ||||||||||  |||| |||||||  ||||||| ||||||||| ||||| |    
T  355 aggtgccatgcaaaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatg 454  T
Q  290 ctctgattgttaatccaacttggtatttcacttcct 325  Q
    ||||||||||| ||||| ||||||||||||||||||    
T  455 ctctgattgttgatccagcttggtatttcacttcct 490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 6101 - 6236
Alignment:
Q  190 aggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacg 289  Q
    |||||||| | |||| ||||||||| |||||||||||||||||||||| ||||||||||  |||| |||||||  ||||||| ||||||||| ||||| |    
T  6101 aggtgccatgcaaaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatg 6200  T
Q  290 ctctgattgttaatccaacttggtatttcacttcct 325  Q
    ||||||||||| ||||| ||||||||||||||||||    
T  6201 ctctgattgttgatccagcttggtatttcacttcct 6236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 31499357 - 31499217
Alignment:
Q  185 tgattaggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactac 284  Q
    |||| ||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||  ||||||| ||||||||  ||    
T  31499357 tgatgaggtgccatagaaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcac 31499258  T
Q  285 ccacgctctgattgttaatccaacttggtatttcacttcct 325  Q
    ||  ||||||||| |||| |||||||| |||||||||||||    
T  31499257 ccttgctctgattcttaaaccaacttgatatttcacttcct 31499217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 31472837 - 31472712
Alignment:
Q  200 gaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctctgattgt 299  Q
    ||||| ||| ||||||||| | | ||||||||||||||||||||||||| |||||| ||||||  ||||| | |||| |||  ||||  | |||||||||    
T  31472837 gaaaatactacacaacatatacaaccaatgatattattgttattgtcatgcataatgggagatgagtctaatcgtatcgaatcacccttgttctgattgt 31472738  T
Q  300 taatccaacttggtatttcacttcct 325  Q
    | | ||||||||||||||||||||||    
T  31472737 tgaaccaacttggtatttcacttcct 31472712  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 321
Target Start/End: Complemental strand, 31479295 - 31479174
Alignment:
Q  200 gaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctctgattgt 299  Q
    ||||| ||| ||||||||||| |||||| |||||||||||||||||| | |||||| |||||    |||||| ||||| || |||||  |||||||||||    
T  31479295 gaaaatactacacaacatacacagccaacgatattattgttattgtcgtgcataatcggagaagaatctattcgtattaaattacccttgctctgattgt 31479196  T
Q  300 taatccaacttggtatttcact 321  Q
    | | ||||||||| ||||||||    
T  31479195 tgaaccaacttggcatttcact 31479174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 324
Target Start/End: Original strand, 31156934 - 31157068
Alignment:
Q  190 aggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacg 289  Q
    |||||| ||||| || |||||||||||  ||| |||||||| || ||||| |||||  | ||||||  |||||  ||| |||  |||||||  |||| ||    
T  31156934 aggtgcaacggagaatactgcacaacaagcaatgccaatgaaatcattgtcattgttgtccataatctgagataggtccattcttattgaatcaccctcg 31157033  T
Q  290 ctctgattgttaatccaacttggtatttcacttcc 324  Q
    ||||||||||| | |||| ||||||||||||||||    
T  31157034 ctctgattgttgaaccaaattggtatttcacttcc 31157068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 190 - 325
Target Start/End: Complemental strand, 17441159 - 17441030
Alignment:
Q  190 aggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacg 289  Q
    |||||||| |||||| ||||||||||||||||| ||||||||||||||||      ||| | |||||||||||  |||||||  |||||||  |||||||    
T  17441159 aggtgccatggaaaatactgcacaacatacaaaaccaatgatattattgt------catgcttaataggagattggtctattcttattgaatcacccacg 17441066  T
Q  290 ctctgattgttaatccaacttggtatttcacttcct 325  Q
    |||| |||||| ||||||||||||||||| ||||||    
T  17441065 ctcttattgttgatccaacttggtatttcgcttcct 17441030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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