View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_high_41 (Length: 318)
Name: NF5811_high_41
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 50273846 - 50274143
Alignment:
| Q |
19 |
tatgtcactaaaaagtaaccatcaaaactcttgtaaattttgatccattagatttggccttaaagattcaatatgacaacatatcatactaaaatttaat |
118 |
Q |
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| T |
50273846 |
tatgtcactaaaaagtaaccatcaaaactcttgtaaattttgatccattagatttggccttaaagattcaatatgacaacatatcatactaaaatttaat |
50273945 |
T |
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| Q |
119 |
aaagtactcaaagagcagacacttgcaaacgtacgaaattgcaacatattcttccaacttggacactattggatgtgatatactcatacatagattgacc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50273946 |
aaagtactcaaagagcagacacttgcaaacgtacgaaattgcaacatattcttccaacttggacactattggatgtgatatactcatacatagattgacc |
50274045 |
T |
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| Q |
219 |
actatcatgtatctcttatgttcctcaatttcttatacataaacctcataatccatttattttcatgtcacaattcataacttccttacatcaaccca |
316 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50274046 |
actatcatgtatctcttatgttcctcaatttattatacataaacctcataatccatttattttcatgtcacaattcataacttccttacatcaaccca |
50274143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 14463074 - 14463021
Alignment:
| Q |
251 |
ttatacataaacctcataatccatttattttcatgtcacaattcataacttcct |
304 |
Q |
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| T |
14463074 |
ttatacataaacctcataatccatttattttcatgtcacaattcataacttcct |
14463021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 14463121 - 14463075
Alignment:
| Q |
105 |
tactaaaatttaataaagtactcaaagagcagacacttgcaaacgta |
151 |
Q |
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| T |
14463121 |
tactaaaatttaataaagtactcaaagagcagacacttgcaaacgta |
14463075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 14463487 - 14463438
Alignment:
| Q |
64 |
cattagatttggccttaaagattcaatatgacaacatatcatactaaaat |
113 |
Q |
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| T |
14463487 |
cattagatttgaccttaaagattcaatatgacaacatatcatactaaaat |
14463438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 14463520 - 14463486
Alignment:
| Q |
54 |
aattttgatccattagatttggccttaaagattca |
88 |
Q |
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| T |
14463520 |
aattttgatccattagatttggccttaaagattca |
14463486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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