View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_high_49 (Length: 283)
Name: NF5811_high_49
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_high_49 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 39 - 212
Target Start/End: Complemental strand, 9862968 - 9862794
Alignment:
| Q |
39 |
aaacatggcatactaagacaaactt-aaaatcttcaaaacaaatagcacattttctctccttttcaacttcctccaatccctcaacacatgactttgctg |
137 |
Q |
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| T |
9862968 |
aaacatggcatactaagacaaactttaaaatcttcaaaacaaatagcacattttctctccttttcaacttcctccaatccctcaacacatgactttgccg |
9862869 |
T |
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| Q |
138 |
caggaaccaatccattatcttcttcatcttcgttgttttcactgctttcactattttcatcaacaaattcaaaat |
212 |
Q |
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| T |
9862868 |
caggaaccaatccattatcttcttcatcttcgctgttttcactgctttcactattttcatcaacaaattcaaaat |
9862794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 90
Target Start/End: Complemental strand, 9857995 - 9857967
Alignment:
| Q |
62 |
ttaaaatcttcaaaacaaatagcacattt |
90 |
Q |
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| T |
9857995 |
ttaaaatcttcaaaacaaatagcacattt |
9857967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 26042347 - 26042280
Alignment:
| Q |
211 |
atcagtatcatcttcactagccctatttacgccaagatcgacttgaatagaaagaaccctttgcttct |
278 |
Q |
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|||||||||||||||||| ||||| | | || |||| ||||| ||||||||||||||||||| |||| |
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| T |
26042347 |
atcagtatcatcttcactggcccttgtaatgctaagaacgactcgaatagaaagaaccctttgattct |
26042280 |
T |
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