View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5811_high_55 (Length: 269)
Name: NF5811_high_55
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_high_55 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 49755366 - 49755592
Alignment:
| Q |
19 |
aatagggtgtatagagcttcattggttggtgagaatggagataaggtggaagctatggcggtttgtcatatggatacatcacaatgggcaccaagtcatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49755366 |
aatagggtgtatagagcttcattggttggtgagaatggagataaggtggaagctatggcggtttgtcatatggatacatcacaatgggcaccaagtcatg |
49755465 |
T |
|
| Q |
119 |
tttcatttcaagttcttgaggttacaccaggaacctcttctgtgtgtcactttttcccagcggataattacatctgggtccctaaattgaaatcacaagg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49755466 |
tttcatttcaagttcttgaggttacaccaggaacctcttctgtgtgtcactttttcccagcggataattacatctgggtccctaaattgaaatcacaagg |
49755565 |
T |
|
| Q |
219 |
ttcttctaggatgtgatttcaagctat |
245 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
49755566 |
ttcttctaggatgtgatttcaagctat |
49755592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 54448908 - 54448689
Alignment:
| Q |
19 |
aatagggtgtatagagcttcattggttggtgagaatggagataaggtggaagctatggcggtttgtcatatggatacatcacaatgggcaccaagtcatg |
118 |
Q |
| |
|
||||||||||||| || || ||||| |||||||||||||||||||| || || |||| ||||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
54448908 |
aatagggtgtataaagttttattggggggtgagaatggagataaggttgaggccatggtggtttgtcacttagatacatcacaatgggcacctagtcatg |
54448809 |
T |
|
| Q |
119 |
tttcatttcaagttcttgaggttacaccaggaacctcttctgtgtgtcactttttcccagcggataattacatctgggtccctaaattgaaatcacaagg |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
54448808 |
tttcatttcaagttcttggtgttacaccaggaagctcttctgtgtgtcattttttcccagcggacaattacatttgggtccctaaagtgaaatcacaagg |
54448709 |
T |
|
| Q |
219 |
ttcttctaggatgtgatttc |
238 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
54448708 |
ttcttctagcatgtgatttc |
54448689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 26208635 - 26208824
Alignment:
| Q |
18 |
aaatagggtgtatagagcttcattggttggtgagaatggagataaggtggaagctatggcggtttgtcatatggatacatcacaatgggcaccaagtcat |
117 |
Q |
| |
|
||||||| | ||||||| |||| | || ||||| ||||| |||| |||||||||||||| ||||||||||||||||| || || |||| || ||||| |
|
|
| T |
26208635 |
aaataggatatatagagtttcacttgtcggtgataatggggatatggtggaagctatggttgtttgtcatatggatacttctcattggggacatggtcat |
26208734 |
T |
|
| Q |
118 |
gtttcatttcaagttcttgaggttacaccaggaacctcttctgtgtgtcactttttcccagcggataattacatctgggtccctaaattg |
207 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||| ||| ||| ||||||||||| || || ||||||| ||| ||||| || |||||| |
|
|
| T |
26208735 |
gtttcatttcaggttcttggtgttgtgccaggaagttctaatgtctgtcacttttttcctgctgataatttcatatgggttccaaaattg |
26208824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University