View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_high_57 (Length: 263)
Name: NF5811_high_57
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_high_57 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 35021913 - 35022146
Alignment:
| Q |
21 |
aacgccttcaccgacgtttaccctgaatccatcaacaacctccttcccgccatctccaacgttcacatctcccttcgcgacctcggcattcgtaaaatct |
120 |
Q |
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| T |
35021913 |
aacgccttcaccgacgtttaccctgaatccatcaacaacctccttcccgccatctccaacgttcacatctcccttcgcgacctcggtattcgtaaaatct |
35022012 |
T |
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| Q |
121 |
ccgtttcaacttccttctccttcgtcaccgccgtaacttccccttttccaccttcctccgcctcgtttcaagaaattcccggcgttaacctgatcggtcc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35022013 |
ccgtttcaacttccttctccttcgtcaccgccgtaacttccccttttccaccttcctccgccgcgtttcaagaaattcccggcgttaacctgatcggtcc |
35022112 |
T |
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| Q |
221 |
acttctccaattcctctccgatactaattcatct |
254 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
35022113 |
acttctccaattcctctccgatactaattcatct |
35022146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 42811575 - 42811487
Alignment:
| Q |
32 |
cgacgtttaccctgaatccatcaacaacctccttcccgccatctccaacgttcacatctcccttcgcgacctcggcattcgtaaaatct |
120 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |
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| T |
42811575 |
cgacgtttaccctgaatccatcaacaacctcctccccgccatctccaacgttcacatctcccttcacgacctcggcatccataaaatct |
42811487 |
T |
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