View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5811_high_60 (Length: 253)

Name: NF5811_high_60
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5811_high_60
NF5811_high_60
[»] chr4 (3 HSPs)
chr4 (71-195)||(47554860-47554984)
chr4 (19-53)||(47554813-47554847)
chr4 (76-132)||(17947298-17947354)
[»] chr7 (1 HSPs)
chr7 (76-134)||(39187704-39187762)
[»] chr5 (1 HSPs)
chr5 (76-130)||(40971862-40971916)
[»] chr8 (1 HSPs)
chr8 (76-132)||(33757893-33757949)
[»] chr2 (1 HSPs)
chr2 (76-138)||(28191745-28191807)
[»] chr3 (1 HSPs)
chr3 (76-132)||(16024816-16024872)


Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 71 - 195
Target Start/End: Original strand, 47554860 - 47554984
Alignment:
Q  71 agaacgaaaacatctcattttattttttaaagacctaattcaaaatttattatatttataggaaaaaatacttgtctaactcatatttttaatgtttatt 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  47554860 agaacgaaaacatctcattttattttttaaagacctaattcaaaatttattatatttataggaaaaaaaacttgtctaattcatatttttaatgtttatt 47554959  T
Q  171 gtttgtcacaaaacatacaataatg 195  Q
    |||||||||||||||||||||||||    
T  47554960 gtttgtcacaaaacatacaataatg 47554984  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 47554813 - 47554847
Alignment:
Q  19 tcaaaattatatctattagagaccgataacaaaac 53  Q
    |||||||||||||||||| ||||||||||||||||    
T  47554813 tcaaaattatatctattaaagaccgataacaaaac 47554847  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 17947298 - 17947354
Alignment:
Q  76 gaaaacatctcattttattttttaaagacctaattcaaaatttattatatttatagg 132  Q
    ||||||||||||||||||||||||  |||  || |||||||||  ||||||||||||    
T  17947298 gaaaacatctcattttattttttagggactaaaatcaaaatttgatatatttatagg 17947354  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 39187704 - 39187762
Alignment:
Q  76 gaaaacatctcattttattttttaaagacctaattcaaaatttattatatttataggaa 134  Q
    ||||||||||||||||||||| |||||||  || |||||||| ||||||||||||||||    
T  39187704 gaaaacatctcattttattttctaaagactaaaatcaaaattcattatatttataggaa 39187762  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 40971916 - 40971862
Alignment:
Q  76 gaaaacatctcattttattttttaaagacctaattcaaaatttattatatttata 130  Q
    ||||||||||||||||||||||||  |||  || |||||||||||||||||||||    
T  40971916 gaaaacatctcattttattttttagggactaaaatcaaaatttattatatttata 40971862  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 33757949 - 33757893
Alignment:
Q  76 gaaaacatctcattttattttttaaagacctaattcaaaatttattatatttatagg 132  Q
    ||||||||||||||| |||||| ||||||  || |||||||||| ||||||||||||    
T  33757949 gaaaacatctcatttcatttttgaaagactaaaatcaaaatttaatatatttatagg 33757893  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 28191745 - 28191807
Alignment:
Q  76 gaaaacatctcattttattttttaaagacctaattcaaaatttattatatttataggaaaaaa 138  Q
    ||||||||||||||||||||| ||||||   || |||||||||  ||||||||||| ||||||    
T  28191745 gaaaacatctcattttattttgtaaagattaaaatcaaaatttgatatatttatagaaaaaaa 28191807  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 16024816 - 16024872
Alignment:
Q  76 gaaaacatctcattttattttttaaagacctaattcaaaatttattatatttatagg 132  Q
    ||||||||||||||||||||||||  |||  || |||||||||  ||||||||||||    
T  16024816 gaaaacatctcattttattttttagggactaaaatcaaaatttgatatatttatagg 16024872  T

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