View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5811_high_62 (Length: 251)
Name: NF5811_high_62
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_high_62 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 7140705 - 7140939
Alignment:
| Q |
17 |
agattctaagtgctaaaagggttcaatctttttcttacattagagaagatgagacaaaaaagtttattgaatcaattaagtcatttgcaggctcaaaaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7140705 |
agattctaagtgctaaaagggttcaatctttttcttacattagagaagatgagacaaaaaagtttattgaatcaattaagtcatttgcaggctcaaaaat |
7140804 |
T |
|
| Q |
117 |
caacctcactactagaattttttcagtgataaattctattattttgagagcggcgttgggtgataaatctgaggatcaagaagaatttgtgtcgttgatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7140805 |
caacctcactactagaattttttcagtgataaattctattattttgagagcggcgttgggtgataaatctgaggatcaagaagaatttgtgtcgttgatt |
7140904 |
T |
|
| Q |
217 |
agaaaagcggtagcggtttcaagtggacttgagct |
251 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7140905 |
agaaaagcggtggcggtttcaagtggacttgagct |
7140939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 7152539 - 7152656
Alignment:
| Q |
20 |
ttctaagtgctaaaagggttcaatctttttcttacattagagaagatgagacaaaaaagtttattgaatcaattaagtcatttgcaggctcaaaaatcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || || |||| ||| | |||| ||||||||| |||||| |
|
|
| T |
7152539 |
ttctaagtgctaaaagggttcaatctttttcttatattagagaagatgaaacaaaaaaattgatacaatccattcaatcatcaacaggctcaacaatcaa |
7152638 |
T |
|
| Q |
120 |
cctcactactagaatttt |
137 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
7152639 |
tctcactagtagaatttt |
7152656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 7130355 - 7130425
Alignment:
| Q |
30 |
taaaagggttcaatctttttcttacattagagaagatgagacaaaaaagtttattgaatcaattaagtcat |
100 |
Q |
| |
|
|||||| |||||||| || ||||| ||||||||||||||||| | ||| ||||| |||||||| |||||| |
|
|
| T |
7130355 |
taaaagagttcaatcattctcttatattagagaagatgagacgagaaattttataaaatcaattcagtcat |
7130425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 55959683 - 55959639
Alignment:
| Q |
25 |
agtgctaaaagggttcaatctttttcttacattagagaagatgag |
69 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
55959683 |
agtgctaaaagggttcaatctttttcttccattagagaagatgag |
55959639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 55956244 - 55956199
Alignment:
| Q |
20 |
ttctaagtgctaaaagggttcaatctttttcttacattagagaaga |
65 |
Q |
| |
|
|||| ||||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
55956244 |
ttcttagtgctaaaagggttcattatttttcttccattagagaaga |
55956199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 12266246 - 12266293
Alignment:
| Q |
20 |
ttctaagtgctaaaagggttcaatctttttcttacattagagaagatg |
67 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
12266246 |
ttcttagtgctaaaagggtccaatctttttcttccattagagaagatg |
12266293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 12426574 - 12426527
Alignment:
| Q |
20 |
ttctaagtgctaaaagggttcaatctttttcttacattagagaagatg |
67 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
12426574 |
ttcttagtgctaaaagggtccaatctttttcttccattagagaagatg |
12426527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University