View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5811_high_63 (Length: 251)

Name: NF5811_high_63
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5811_high_63
NF5811_high_63
[»] chr2 (3 HSPs)
chr2 (1-230)||(36141850-36142079)
chr2 (15-69)||(32592574-32592628)
chr2 (59-105)||(32592642-32592688)
[»] chr6 (2 HSPs)
chr6 (156-223)||(1335736-1335801)
chr6 (1-96)||(1335564-1335659)
[»] chr4 (1 HSPs)
chr4 (9-85)||(42404010-42404086)
[»] chr1 (3 HSPs)
chr1 (9-69)||(3234043-3234103)
chr1 (1-69)||(17603412-17603480)
chr1 (13-69)||(42174841-42174897)
[»] chr7 (2 HSPs)
chr7 (9-69)||(4970821-4970881)
chr7 (9-69)||(46280300-46280360)
[»] chr5 (1 HSPs)
chr5 (1-69)||(16937911-16937979)
[»] chr3 (3 HSPs)
chr3 (9-69)||(20170505-20170565)
chr3 (1-69)||(39980703-39980771)
chr3 (9-69)||(47132313-47132373)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 36142079 - 36141850
Alignment:
Q  1 taacgttcaattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaattgtcgtaagctgtttttataagctctcacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  36142079 taacgttcaattgtttttgtatacgctatatgttggttttataagtaatatttggggacttatgaaaattgtcgtaagctgtttttataagctctcgcaa 36141980  T
Q  101 atagagtcttacaacatttatgtcagtagattcgttcaaataagatatgttagcgtaaaagtgtatgtccattagactctttactttaaagtagtcaaat 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36141979 acagagtcttacaacatttatgtcagtagattcgttcaaataagatatgttagcgtaaaagtgtatgtccattagactctttactttaaagtagtcaaat 36141880  T
Q  201 tcttaaattttatggtgagcacttctgaat 230  Q
    ||||||||||||||||||||||||||||||    
T  36141879 tcttaaattttatggtgagcacttctgaat 36141850  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 32592574 - 32592628
Alignment:
Q  15 ttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 69  Q
    |||||||||||||||| |||| ||||||||| |||||| ||| ||||||||||||    
T  32592574 ttttgtatacgctataagttgtttttataagcaatattggagaacttatgaaaat 32592628  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 32592642 - 32592688
Alignment:
Q  59 cttatgaaaattgtcgtaagctgtttttataagctctcacaaataga 105  Q
    |||||||||||||||||||||| |||| ||||| |||| ||||||||    
T  32592642 cttatgaaaattgtcgtaagctattttcataagttctcccaaataga 32592688  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 1335736 - 1335801
Alignment:
Q  156 taaaagtgtatgtccattagactctttactttaaagtagtcaaattcttaaattttatggtgagcact 223  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||||||| ||||| |||||||||||    
T  1335736 taaaagtgtatgtccattggactctttactt--aagtagtcaaattcttatattttgtggtgagcact 1335801  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 1335564 - 1335659
Alignment:
Q  1 taacgttcaattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaattgtcgtaagctgtttttataagctctc 96  Q
    |||| ||| ||||||||| || || ||||||||| ||||||||| | || ||||||||||||||||||||||| || |||| |||| |||||||||    
T  1335564 taacattcgattgtttttttacacactatatgttcgttttataaattatctttgaggacttatgaaaattgtcataggctgcttttgtaagctctc 1335659  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 42404086 - 42404010
Alignment:
Q  9 aattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaattgtcgtaagctgtttt 85  Q
    ||||||||||||| | ||| || | || |||||||||  |||||||||  ||||||||||||||| |||||||||||    
T  42404086 aattgtttttgtacatgctgtaagctgtttttataagccatatttgagtgcttatgaaaattgtcataagctgtttt 42404010  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 3234103 - 3234043
Alignment:
Q  9 aattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 69  Q
    ||||||||||||||| |||||| |||| |||||||||  ||||| ||| ||||||||||||    
T  3234103 aattgtttttgtatatgctataagttgtttttataagctatattggagaacttatgaaaat 3234043  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 17603480 - 17603412
Alignment:
Q  1 taacgttcaattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 69  Q
    ||||||| ||||||||||||||| |||||| |||| |||||||||  ||||| ||| |||| |||||||    
T  17603480 taacgttaaattgtttttgtatatgctataagttgtttttataagctatattggagaacttctgaaaat 17603412  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 42174841 - 42174897
Alignment:
Q  13 gtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 69  Q
    ||||||||||| |||||| |||| |||||||||| ||||| ||| ||||||||||||    
T  42174841 gtttttgtatatgctataagttgtttttataagttatattggagaacttatgaaaat 42174897  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 4970881 - 4970821
Alignment:
Q  9 aattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 69  Q
    ||||||||||||||| |||||| |||  |||||||||  ||||| ||| ||||||||||||    
T  4970881 aattgtttttgtatatgctataagttctttttataagatatattagagaacttatgaaaat 4970821  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 46280360 - 46280300
Alignment:
Q  9 aattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 69  Q
    ||||||||||||||| |||||| | || |||||||||  ||||| ||| ||||||||||||    
T  46280360 aattgtttttgtatatgctataagctgtttttataagctatattggagaacttatgaaaat 46280300  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 16937979 - 16937911
Alignment:
Q  1 taacgttcaattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 69  Q
    ||||||| ||||||||||||||| |||||| |||| ||||||| |  ||||| ||| ||||| ||||||    
T  16937979 taacgttaaattgtttttgtatatgctataagttgtttttatacgctatattggagaacttaggaaaat 16937911  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 20170505 - 20170565
Alignment:
Q  9 aattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 69  Q
    ||||||||||||||| |||||| |||| ||||| |||| || |||||| ||| ||||||||    
T  20170505 aattgtttttgtatatgctataagttgtttttacaagttatttttgagaactaatgaaaat 20170565  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 39980703 - 39980771
Alignment:
Q  1 taacgttcaattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 69  Q
    ||||||| ||||||||||| | | |||||| |||| |||||||||  ||||| ||| ||||||||||||    
T  39980703 taacgttaaattgtttttgaacatgctataagttgtttttataagctatattggagaacttatgaaaat 39980771  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 47132313 - 47132373
Alignment:
Q  9 aattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 69  Q
    ||||||||||||||| |||||| |||| |||||||||  ||||| ||| | ||||||||||    
T  47132313 aattgtttttgtatatgctataggttgtttttataagctatattggagaagttatgaaaat 47132373  T

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