View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5811_high_64 (Length: 251)

Name: NF5811_high_64
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5811_high_64
NF5811_high_64
[»] scaffold0140 (2 HSPs)
scaffold0140 (1-151)||(33326-33477)
scaffold0140 (188-236)||(33239-33287)


Alignment Details
Target: scaffold0140 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 33477 - 33326
Alignment:
Q  1 ccttcaatttacacatatttctaaagaaaaaacacaaaagtcataacacggttttttg-acataaaatcattttctataagcaaagtctacaagtgcaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  33477 ccttcaatttacacatatttctaaagaaaaaacacaaaagtcataacacggttttttgtatataaaatcattttctataagcaaagtctacaagtgcaaa 33378  T
Q  100 tgacaaaggattctaattggtttagccaaaacatgatatatgattttagagc 151  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33377 tgacaaaggagtctaattggtttagccaaaacatgatatatgattttagagc 33326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 33287 - 33239
Alignment:
Q  188 cactagttaaggtcgctttgtatcctctctgttctatagctggcctatg 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33287 cactagttaaggtcgctttgtatcctctctgttctatagctggcctatg 33239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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