View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5811_high_69 (Length: 241)

Name: NF5811_high_69
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5811_high_69
NF5811_high_69
[»] chr7 (4 HSPs)
chr7 (20-241)||(21839407-21839628)
chr7 (94-241)||(47824889-47825037)
chr7 (28-230)||(3743738-3743941)
chr7 (98-176)||(31720225-31720303)
[»] chr3 (4 HSPs)
chr3 (99-241)||(3440351-3440493)
chr3 (105-241)||(30406214-30406351)
chr3 (93-230)||(26270073-26270210)
chr3 (105-175)||(54045156-54045226)
[»] chr6 (6 HSPs)
chr6 (97-239)||(15107118-15107260)
chr6 (98-241)||(17111450-17111593)
chr6 (94-211)||(17111622-17111739)
chr6 (94-208)||(24954675-24954789)
chr6 (96-176)||(20757288-20757368)
chr6 (154-239)||(14361920-14362005)
[»] chr4 (5 HSPs)
chr4 (98-239)||(25708128-25708269)
chr4 (20-207)||(29546405-29546593)
chr4 (96-223)||(11773820-11773948)
chr4 (106-232)||(31373386-31373512)
chr4 (106-178)||(7320596-7320668)
[»] chr2 (4 HSPs)
chr2 (31-224)||(11169586-11169779)
chr2 (105-174)||(40489786-40489855)
chr2 (105-174)||(40516287-40516356)
chr2 (103-176)||(9547846-9547919)
[»] chr5 (4 HSPs)
chr5 (94-174)||(19847818-19847898)
chr5 (94-241)||(23409603-23409750)
chr5 (118-176)||(32199992-32200049)
chr5 (133-177)||(31966712-31966756)
[»] chr1 (4 HSPs)
chr1 (105-176)||(15223321-15223392)
chr1 (118-175)||(12656909-12656966)
chr1 (118-174)||(5182117-5182173)
chr1 (102-169)||(1073337-1073404)
[»] scaffold0128 (1 HSPs)
scaffold0128 (99-176)||(42045-42122)
[»] chr8 (1 HSPs)
chr8 (151-183)||(43826602-43826634)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 21839628 - 21839407
Alignment:
Q  20 gttcgtaattggctaggagttcattcagtggatccatgtatacttgcggatcatattttacagcttggtagccatcaggttatgcaaaatcaaggagctc 119  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21839628 gttcgtaattggctaggagttcattcagtggatccatctattcttgcggatcatattttacagcttggcagccatcaggttatgcaaaatcaaggagctc 21839529  T
Q  120 tttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatgacatgattattcgtggcaaacaaaattctccttttcagcttttg 219  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21839528 tttcatgtttttgatctggtttgctagttcttgagtgatttagaaggaaagaaatgacatgattattcgtggcaaacaaaattctccttttcagcttttg 21839429  T
Q  220 gagaaaattaaacttatttcct 241  Q
    ||||||||||||||| ||||||    
T  21839428 gagaaaattaaacttctttcct 21839407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 241
Target Start/End: Complemental strand, 47825037 - 47824889
Alignment:
Q  94 tcaggttatgcaaaatcaaggagctctttcatgt-ttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatgacatgattattcgtggc 192  Q
    ||||||||||||||||||||| | |||||||||| |||| | ||| || ||||||||||||||||||| ||||||| ||||||  ||| || |  |   |    
T  47825037 tcaggttatgcaaaatcaaggtgttctttcatgtttttttacctgattagctagttcttgggtgatttggaaggaatgaaatggtatgcttttctgcctc 47824938  T
Q  193 aaacaaaattctccttttcagcttttggagaaaattaaacttatttcct 241  Q
    ||| | ||  ||||| |||||||||||||||| ||||||||| ||||||    
T  47824937 aaagataaccctcctcttcagcttttggagaatattaaacttctttcct 47824889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 230
Target Start/End: Original strand, 3743738 - 3743941
Alignment:
Q  28 ttggctaggagttcattcagtggatccatgtatacttgcggatcatattttacagcttggtagc-catcaggttatgcaaaatcaaggagctctttcatg 126  Q
    |||||| ||||||||||||||||||||||  |   |||  |||||| |||  ||| |||||| | | |||||||  |||||||||||||  ||||||| |    
T  3743738 ttggcttggagttcattcagtggatccatccaacattgtagatcatttttatcagtttggtacctcttcaggtttcgcaaaatcaaggatttctttcacg 3743837  T
Q  127 tttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatgacatgattattcgtggcaaacaaaattctccttttcagcttttggagaaaa 226  Q
      |||||||| ||||||||| |||||| |||| | ||||||||||||||||| | || | ||||||| |||| || | ||| ||| |||| ||||||| |    
T  3743838 catttgatctagtttgctagctcttggatgatatggaaggaaagaaatgacaggcttttccgtggcatacaacatacgcctattcggcttgtggagaata 3743937  T
Q  227 ttaa 230  Q
    ||||    
T  3743938 ttaa 3743941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 31720225 - 31720303
Alignment:
Q  98 gttatgcaaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatga 176  Q
    ||||||||| ||||||| |||| |||||| ||||||| |||||||| |||| |||||||||||  ||||||||||||||    
T  31720225 gttatgcaacatcaaggcgctcattcatgattttgatatggtttgcaagttattgggtgatttgaaaggaaagaaatga 31720303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 99 - 241
Target Start/End: Original strand, 3440351 - 3440493
Alignment:
Q  99 ttatgcaaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatgacatgattattcgtggcaaacaa 198  Q
    |||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||  |||||||||||||||| |||| ||||||||||| ||    
T  3440351 ttattcaaaatcaaggagctctttcatgttattgatctggtttgcgagttcttgggtgatttgaaaggaaagaaatgacaagatttttcgtggcaaaaaa 3440450  T
Q  199 aattctccttttcagcttttggagaaaattaaacttatttcct 241  Q
    |   ||| | |||||||||||||||| ||||||||| ||||||    
T  3440451 agcactcttcttcagcttttggagaatattaaacttctttcct 3440493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 105 - 241
Target Start/End: Complemental strand, 30406351 - 30406214
Alignment:
Q  105 aaaatcaaggagctctttcatgtttttgatct-ggtttgctagttcttgggtgatttagaaggaaagaaatgacatgattattcgtggcaaacaaaattc 203  Q
    |||||||||| | ||||||||||||||||||| ||||||| |||||||||||||||| |||| ||| |||||  | | || | || |||||| |||| ||    
T  30406351 aaaatcaaggtgttctttcatgtttttgatctgggtttgcaagttcttgggtgatttggaagcaaataaatgttaggcttttccgaggcaaagaaaactc 30406252  T
Q  204 tccttttcagcttttggagaaaattaaacttatttcct 241  Q
     |||||| ||||||||||||| |||||| || ||||||    
T  30406251 ccctttttagcttttggagaatattaaatttctttcct 30406214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 230
Target Start/End: Original strand, 26270073 - 26270210
Alignment:
Q  93 atcaggttatgcaaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatgacatgattattcgtggc 192  Q
    |||||||||| | ||||||| | |||  |||||||| ||||| |||||||| | |||||||||||| |  ||||||||||||||||| ||| | | |||     
T  26270073 atcaggttatactaaatcaaagcgcttgttcatgttattgatttggtttgcgacttcttgggtgatctgaaaggaaagaaatgacataattttccatggt 26270172  T
Q  193 aaacaaaattctccttttcagcttttggagaaaattaa 230  Q
    ||| ||||  ||| | |||| ||||||||||| |||||    
T  26270173 aaagaaaacgctcttattcaacttttggagaagattaa 26270210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 54045226 - 54045156
Alignment:
Q  105 aaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatg 175  Q
    |||||||||| ||||||||||| || ||||||||| ||| | ||||||||| |||| |||||||| |||||    
T  54045226 aaaatcaaggtgctctttcatgattgtgatctggtatgcgatttcttgggtaatttggaaggaaaaaaatg 54045156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 239
Target Start/End: Original strand, 15107118 - 15107260
Alignment:
Q  97 ggttatgcaaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatgacatgattattcgtggcaaac 196  Q
    |||||||| ||||||||| ||||||||||||| ||||| |||||||| ||||||||| |||||| ||||||||||||||| | |||| |||||||||||     
T  15107118 ggttatgctaaatcaaggtgctctttcatgttattgatttggtttgcgagttcttggatgatttggaaggaaagaaatgataggatttttcgtggcaaag 15107217  T
Q  197 aaaattctccttttcagcttttggagaaaattaaacttatttc 239  Q
    ||||||||||| || || |||||||||| ||||| ||| ||||    
T  15107218 aaaattctcctattaagtttttggagaatattaagcttctttc 15107260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 241
Target Start/End: Original strand, 17111450 - 17111593
Alignment:
Q  98 gttatgcaaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatgacatgattattcgtggcaaaca 197  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| |||| ||| |||| ||||||||||  |    
T  17111450 gttattcaaaatcaaggagctctttcatgtttttgatcttgtttgcgagttcttgggtgatttggaaggaaataaataacaggatttttcgtggcaagga 17111549  T
Q  198 aaattctccttttcagcttttggagaaaattaaacttatttcct 241  Q
     ||| ||||| |||  |||||||| || ||||| ||| ||||||    
T  17111550 gaatactcctcttcgacttttggaaaatattaagcttttttcct 17111593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 17111622 - 17111739
Alignment:
Q  94 tcaggttatgcaaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatgacatgattattcgtggca 193  Q
    ||||| ||| |||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||  |||||||||||| |||||||||    
T  17111622 tcaggctattcaaaatcaaggagctctttcatgttttttatcttgtttgcaagttcttgggtgatttggaaggaaatgaatgacatgatttttcgtggca 17111721  T
Q  194 aacaaaattctccttttc 211  Q
    |  | ||| |||||||||    
T  17111722 aggagaatactccttttc 17111739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 208
Target Start/End: Complemental strand, 24954789 - 24954675
Alignment:
Q  94 tcaggttatgcaaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatgacatgattattcgtggca 193  Q
    ||||| ||| |||||| ||| | |||||||||||| ||||| |||||||||| |||||||||||||| ||||||||||||||| | |||  |||||||||    
T  24954789 tcaggatatacaaaattaagaacctctttcatgttattgatttggtttgctacttcttgggtgatttggaaggaaagaaatgataggatatttcgtggca 24954690  T
Q  194 aacaaaattctcctt 208  Q
    || ||||||||||||    
T  24954689 aagaaaattctcctt 24954675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 20757368 - 20757288
Alignment:
Q  96 aggttatgcaaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatga 176  Q
    |||||||||| |||||| | | ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  20757368 aggttatgcataatcaatgtgttctttcatgtttttgatctggtttgatagttcttgggtgatttggaaggaaagaaatga 20757288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 14362005 - 14361920
Alignment:
Q  154 gtgatttagaaggaaagaaatgacatgattattcgtggcaaacaaaattctccttttcagcttttggagaaaattaaacttatttc 239  Q
    ||||||| ||||||||||||||| | | |  |||| || |  || |||||||||||||| ||| ||||||||||||||||| ||||    
T  14362005 gtgatttcgaaggaaagaaatgataggttgtttcgcggtactcagaattctccttttcaacttgtggagaaaattaaacttctttc 14361920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 25708128 - 25708269
Alignment:
Q  98 gttatgcaaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttag-aaggaaagaaatgacatgattattcgtggcaaac 196  Q
    |||| ||||||||||| || ||||||||||||| ||||| ||||||||||||||||||||||| | ||| |||||||||||||| |  |||||||| |||    
T  25708128 gttacgcaaaatcaagaagttctttcatgttttagatctagtttgctagttcttgggtgatttggaaagaaaagaaatgacatgttgtttcgtggc-aac 25708226  T
Q  197 aaaattctccttttcagcttttggagaaaattaaacttatttc 239  Q
    |||| |||||| ||| || ||||||||||||||||||| ||||    
T  25708227 aaaactctcctcttcggcatttggagaaaattaaacttctttc 25708269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 29546405 - 29546593
Alignment:
Q  20 gttcgtaattggctaggagttcattcagtggatccatgtatacttgcggatcatattttacagcttggtagc-catcaggttatgcaaaatcaaggagct 118  Q
    ||||| |||||||||||||||||||||| |||||| | |||  ||||||||||| |||||||| |||   |  |||| | |||||| |||||||   | |    
T  29546405 gttcgaaattggctaggagttcattcagcggatccgtctattattgcggatcattttttacagtttgacggttcatcggattatgctaaatcaatacgtt 29546504  T
Q  119 ctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaa-tgacatgattattcgtggcaaacaaaattctcct 207  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||| ||| | |||||||| || |||||||| |||||||||||    
T  29546505 ctttcatgttattgatctggtttgctagtttttgggtgatttagaaggaaataaagtaacatgatt-tttgtggcaaagaaaattctcct 29546593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 11773820 - 11773948
Alignment:
Q  96 aggttatgcaaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatgacatga--ttattcgtggca 193  Q
    ||||||||| ||||||||| | |||||||||  |||||| |||||||||||  ||| ||||||||||||||||| |||||| | ||  || ||||||| |    
T  11773820 aggttatgctaaatcaaggtgttctttcatgcatttgatttggtttgctagcgcttcggtgatttagaaggaaataaatgata-gacttttttcgtggta 11773918  T
Q  194 aacaaaattctccttttcagcttttggaga 223  Q
     ||||||||||||| |||||||| ||||||    
T  11773919 tacaaaattctcctattcagcttgtggaga 11773948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 31373512 - 31373386
Alignment:
Q  106 aaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatgacatgattattcgtggcaaacaaaattctc 205  Q
    ||||||||| |||| || ||||  ||||| |||||||||||  |||||||||||| ||||||| ||||||| | | |  || |||| |  ||||||||||    
T  31373512 aaatcaaggtgctccttgatgtacttgatttggtttgctagcacttgggtgatttggaaggaaggaaatgataggttgttttgtggtattcaaaattctc 31373413  T
Q  206 cttttcagcttttggagaaaattaaac 232  Q
    ||||| || || |||||||||||||||    
T  31373412 ctttttagtttgtggagaaaattaaac 31373386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 7320596 - 7320668
Alignment:
Q  106 aaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatgaca 178  Q
    ||||||||| | ||||| |||  | |||| |||||||||||||| ||||| ||||  ||||||||||||||||    
T  7320596 aaatcaaggtgttctttaatgcatctgatttggtttgctagttcgtgggttatttgaaaggaaagaaatgaca 7320668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 224
Target Start/End: Complemental strand, 11169779 - 11169586
Alignment:
Q  31 gctaggagttcattcagtggatccatgtatacttgcggatcatattttacagcttggtagc-catcaggttatgcaaaatcaaggagctctttcatgttt 129  Q
    ||||||||||||||||| | || ||| |||  ||||||||||| ||||| |  ||||| || | ||||||||||||||||||| |||||||||||||||     
T  11169779 gctaggagttcattcagcgaattcatctattattgcggatcat-ttttataatttggtggctcttcaggttatgcaaaatcaatgagctctttcatgtta 11169681  T
Q  130 ttgatctggtttgctagttcttgggtgatttagaaggaaagaaatgacatgattattcgtggcaaacaaaattctccttttcagcttttggagaa 224  Q
    ||||  || ||||||||||||||||||||||  ||||||| |||||||||||||  |||||| |||||||| | || |  ||| |||||||||||    
T  11169680 ttgagttgatttgctagttcttgggtgatttgaaaggaaaaaaatgacatgatttctcgtggtaaacaaaactttcatcctcaacttttggagaa 11169586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 40489855 - 40489786
Alignment:
Q  105 aaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaat 174  Q
    |||||||||| | |||||||||||||||||||||||||| ||||| || ||||||| |||||||||||||    
T  40489855 aaaatcaaggcgttctttcatgtttttgatctggtttgcaagttcctgcgtgatttggaaggaaagaaat 40489786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 40516356 - 40516287
Alignment:
Q  105 aaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaat 174  Q
    |||||||||| | |||||||||| ||||||||| ||||| |||||||| ||||||| |||||||||||||    
T  40516356 aaaatcaaggtgttctttcatgtctttgatctgatttgcaagttcttgcgtgatttggaaggaaagaaat 40516287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 9547919 - 9547846
Alignment:
Q  103 gcaaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatga 176  Q
    |||||||||||| | |||||||||| |||||| | ||||||||||  ||| ||||||| |||||||||||||||    
T  9547919 gcaaaatcaaggtgttctttcatgtctttgatttcgtttgctagtgtttgagtgatttggaaggaaagaaatga 9547846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 19847818 - 19847898
Alignment:
Q  94 tcaggttatgcaaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaat 174  Q
    |||||| ||||||||||| |  | || ||||||||||| || ||||||||||||||||||||||||| |||||||||||||    
T  19847818 tcaggtcatgcaaaatcacgacgttccttcatgtttttaatttggtttgctagttcttgggtgatttggaaggaaagaaat 19847898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 23409603 - 23409750
Alignment:
Q  94 tcaggttatgcaaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatgacatgattattcgtggca 193  Q
    |||||||| ||| |||||| | | |||||||||  ||||||||| ||||||||||||||  |||||| |||||||| |||||| | | |  | | |||      
T  23409603 tcaggttacgcagaatcaatgtgttctttcatgcatttgatctgatttgctagttcttgaatgatttggaaggaaataaatgataggctattccatggtt 23409702  T
Q  194 aacaaaattctccttttcagcttttggagaaaattaaacttatttcct 241  Q
    || ||||||||| | ||||||||||||||||  |||| ||| ||||||    
T  23409703 aagaaaattctcttgttcagcttttggagaatgttaagcttctttcct 23409750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 32199992 - 32200049
Alignment:
Q  118 tctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatga 176  Q
    |||||||||| |||||| |||||||||||||||| | |||||| |||||||||||||||    
T  32199992 tctttcatgtctttgatttggtttgctagttctt-gatgatttggaaggaaagaaatga 32200049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 31966756 - 31966712
Alignment:
Q  133 atctggtttgctagttcttgggtgatttagaaggaaagaaatgac 177  Q
    |||||||||||||||| ||||||||||| ||||| ||| ||||||    
T  31966756 atctggtttgctagtttttgggtgattttgaaggtaaggaatgac 31966712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 15223392 - 15223321
Alignment:
Q  105 aaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatga 176  Q
    |||||||||| | | |||||||| ||||||||||||||| ||||||||||| |||| |||||||||||||||    
T  15223392 aaaatcaaggtgttatttcatgtctttgatctggtttgcaagttcttgggtaatttggaaggaaagaaatga 15223321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 12656909 - 12656966
Alignment:
Q  118 tctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatg 175  Q
    |||||||||  |||||| |||||||||||||||||| |||||| |||| |||||||||    
T  12656909 tctttcatgcatttgatttggtttgctagttcttggatgatttggaagaaaagaaatg 12656966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 5182173 - 5182117
Alignment:
Q  118 tctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaat 174  Q
    |||||||||  |||||| ||||||||||| ||||||||||||| |||| ||||||||    
T  5182173 tctttcatgcatttgatatggtttgctagctcttgggtgatttggaagaaaagaaat 5182117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 1073404 - 1073337
Alignment:
Q  102 tgcaaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaa 169  Q
    ||||||||||||| | ||||| |||| ||| ||||||||||| || |  |||||||||||||||||||    
T  1073404 tgcaaaatcaaggtgttcttttatgtatttaatctggtttgcaagcttgtgggtgatttagaaggaaa 1073337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 42045 - 42122
Alignment:
Q  99 ttatgcaaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgggtgatttagaaggaaagaaatga 176  Q
    |||||||| |||||||   || |||||| ||||||||||||| || |||||||| ||||||| |||||||||||||||    
T  42045 ttatgcaacatcaaggctttccttcatgattttgatctggttagcaagttcttgagtgatttggaaggaaagaaatga 42122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 43826634 - 43826602
Alignment:
Q  151 tgggtgatttagaaggaaagaaatgacatgatt 183  Q
    ||||||||||||||||||||||| |||||||||    
T  43826634 tgggtgatttagaaggaaagaaacgacatgatt 43826602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University