View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_high_8 (Length: 607)
Name: NF5811_high_8
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 253 - 589
Target Start/End: Complemental strand, 17990924 - 17990588
Alignment:
| Q |
253 |
gaaattcttcttgtcatcaacacccttaccagttgaacttactgcatgtgctggaagatttgcatgcacctcacccatcttttcttcatggccaccttct |
352 |
Q |
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| T |
17990924 |
gaaattcttcttgtcatcaacacccttaccagttgaacttactgcatgtgctggaagatttgcatgcacctcacccatcttttcttcatggccaccttct |
17990825 |
T |
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| Q |
353 |
ccatttggaacagtacgtgctgcacttgcatgcactgcaactagtacaacaaacaaaagaattgtactcaccttttccatctcactaaccttttgaacac |
452 |
Q |
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| T |
17990824 |
ccatttggaatcgtacgtgctgcacttgcatgcactacagctagtacaacaaacaaaagaattgtactcaccttttccatcttacttaccttttgaacac |
17990725 |
T |
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| Q |
453 |
tttgtttcggcttttcagtaggaaaaacttgatatgatgttgtagattgcatgcacaaacggtgtgttatataatagtggaaaaggtatagtggacggtt |
552 |
Q |
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| T |
17990724 |
tttgtttcggtttttcagtaggaaaaacttgatatgatgttgtagattgcatgcacaaacggtgtgttatataatagtggaaaaggtatagtggacagtt |
17990625 |
T |
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| Q |
553 |
gagagcaataaaagatagcaagtgaaagtagtaaaga |
589 |
Q |
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| T |
17990624 |
gagagcaataaaagatagcaagtgaaagtagtaaaga |
17990588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 17991186 - 17991156
Alignment:
| Q |
3 |
caccaccaccaaggccaccaaactttcctat |
33 |
Q |
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| T |
17991186 |
caccaccaccaaggccaccaaactttcctat |
17991156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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