View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_high_84 (Length: 223)
Name: NF5811_high_84
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_high_84 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 37807665 - 37807480
Alignment:
| Q |
18 |
acaataaggggttctcaccatattctctatag--tctggttggtaatagcttgtcttactcctaccaattcttagtatgagtgccgttagatctatagta |
115 |
Q |
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| T |
37807665 |
acaataaggggttctcaccatattctctatagagtctggttggtaatagcttgtcttactcctaccaattcttagtatgagtgccgttagatctata--- |
37807569 |
T |
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| Q |
116 |
tataataatcttagagagaacaatcgaagcacagagagacatatatcttctatatgtctaatgtctataagtagtacgtatctcctctt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37807568 |
tataataatcttagagagaacaatcgaagcacagagagacatatatcatctatatgtctaatgtctataagtagtacgtatctcctctt |
37807480 |
T |
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