View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_1 (Length: 1006)
Name: NF5811_low_1
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-172; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 469 - 826
Target Start/End: Original strand, 50651257 - 50651615
Alignment:
| Q |
469 |
aaaatcacactcggatatattgcaattgccattttggttgaacgggttgaagcatagttggctcaacaaatatttatttttatttccnnnnnnnnataat |
568 |
Q |
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| T |
50651257 |
aaaatcacactcggatatattgcaattgccattttggttgaacgggttgaagcatagttggctcaacaaatatttatttttatttcctttttttaataat |
50651356 |
T |
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| Q |
569 |
atttggcattgattgagaagataattctgtcaaatcccagctcaatactccacaaaaatgcatctaacaaagcctttgctactcccattcggactgacat |
668 |
Q |
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| T |
50651357 |
atttggcattgattgagaagataattctgtcaaatcccagctcaatactccacaaaaatgcatctaacaaagcttttgcttctcccattcggactgacat |
50651456 |
T |
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| Q |
669 |
caaaggttccaaccatagagtgttcactccgacaaacaaatcatctcgtccctaatacatattccaataccaactcattatgatgagag-agaaaaatgc |
767 |
Q |
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| T |
50651457 |
caaaggttccagccatagagtgttcactccgacaaacaaatcatctcgtccctaatacatattccaataccaactcattatgatgagagaaaaaaaatgc |
50651556 |
T |
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| Q |
768 |
tggtagtacgacaccattgaatcaaactgctttgcttgagctgctacccttgggatcac |
826 |
Q |
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| T |
50651557 |
tggtaggacgacaccattgaatcaaactgctttgcttgagctgctacccttgggatcac |
50651615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 866 - 1006
Target Start/End: Original strand, 50651615 - 50651755
Alignment:
| Q |
866 |
cgctcgacctctacaaaccacatcagctgaactttcgactttattttcccaaattgtcaggttcctactcttccacaagctccacagcgtgacagaaaat |
965 |
Q |
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| T |
50651615 |
cgctcgacctctacaaaccacatcagctgaactttcgactttattttcccaaattgtcaggttcctactcttccacaagctccacatcgtgacagcaaat |
50651714 |
T |
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| Q |
966 |
atgccacggcagttgctccaaaacttgaaacacacttccta |
1006 |
Q |
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| T |
50651715 |
atgccacggcagttgctccaaaacttgaaacacacttccta |
50651755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 50650959 - 50651036
Alignment:
| Q |
171 |
taagtagaaatcaaacttgataaatttataagtttataacgcacaaagtaaccactcgtgcttgatgaggcaataaac |
248 |
Q |
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| T |
50650959 |
taagtagaaatcaaacttaataaatttataagtttataacgcacaaagtaaccacttgtgcttgatgaggcaataaac |
50651036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 337 - 418
Target Start/End: Original strand, 50651125 - 50651206
Alignment:
| Q |
337 |
ggatactttaagaataattgtaatttatgtgcaatgnnnnnnngacatagacaattgttttaacgcttagataatacaagca |
418 |
Q |
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| T |
50651125 |
ggatactttaagaataattgtaatttatgtgcaatgtttttttgacatagacaattgttttaacgctcagataatacaagca |
50651206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 50650818 - 50650868
Alignment:
| Q |
38 |
ataaactggtcaatttcttaaaataacattttataaacaagacataaaact |
88 |
Q |
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| T |
50650818 |
ataaactggtcaatttcttaaaataacattttataaacaagacataaaact |
50650868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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