View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_10 (Length: 574)
Name: NF5811_low_10
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 265 - 557
Target Start/End: Original strand, 7077151 - 7077443
Alignment:
| Q |
265 |
ccctatttcaaatggtgattgttcaatacattctccaaattactcacaattttagggaaatgtggttatgtaacaattttcagagacgacttaggtaagt |
364 |
Q |
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| T |
7077151 |
ccctatttcaaatggtgactcttcaatacattcttcaaattactcacaattttagggaaatgtggttatgtgacagttttcagagacgacttagttaagt |
7077250 |
T |
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| Q |
365 |
ggttatgtggttttagtcgaaatttagggtcttgtttgatgcttatctcagaactttggagaacatactttgctcttcttgtttgggttaaaagatacca |
464 |
Q |
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| T |
7077251 |
ggttatgtggttttagtcgaaatttagggtcttgtttgatgcttatctcggaactttggagaatatactttgctcttcttgtttgggttaaaagatacca |
7077350 |
T |
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| Q |
465 |
aacactttctcttgaatcagactcggagattgttgtgttcttggttaataatgagcgtccttcgactcatttttgctttttgattgtctcttt |
557 |
Q |
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| T |
7077351 |
aacactttctcttgaatcagactcggagattgtggtgttcttggttaataatgggcgtccttcgactcatttttgctttttgattgtctcttt |
7077443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 7076898 - 7077087
Alignment:
| Q |
18 |
atgtttataaatcacaattattaatatttataattgtatacacaactacgattaaaacaaaacatctttt---atctagtagttaaaattacggtatgaa |
114 |
Q |
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| T |
7076898 |
atgtttataaatcacaattattaatatttataattgcatacacaactacgattaaaacaaaacatcttttatgatctagtagttaaaattacggtatgaa |
7076997 |
T |
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| Q |
115 |
agatatttatattaatattacatatgaataacagaagaagnnnnnnnctgtatgaataaaattcataagagattc-atgttaaaaactca |
203 |
Q |
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| T |
7076998 |
agatatttatattaatattacatatgaataacggaagaaaaaaaaatccgtatgaataaaattcataagagattctatgttaaaaactca |
7077087 |
T |
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