View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_11 (Length: 534)
Name: NF5811_low_11
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 44 - 519
Target Start/End: Complemental strand, 50788777 - 50788301
Alignment:
| Q |
44 |
atgttttgttaataatgtcgaatcgaagtatcaagagctgaatctcgatagaatagaccgcaataaggtcattctgtcacttacaatagtgttnnnnnnn |
143 |
Q |
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| T |
50788777 |
atgttttgttaataatgtcgaatcgaagtatcaagagctgaatctcggtagaatagattgtaataaggtcattctgtcacttacaatagtgttaaaaaaa |
50788678 |
T |
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| Q |
144 |
-tacatacatgtaatgttgacctcatgttaccatttttgtcaaacagttannnnnnncaaacattttataaacaccaaaagggaagcacaaatgtgatgt |
242 |
Q |
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| T |
50788677 |
atacatacatgtaatattgacgtcatgttaccatttttgtcaaacagttatttttttcaaacattttataaacaccaaaagggaagaacaaatgtgacgt |
50788578 |
T |
|
| Q |
243 |
tgtttggtttggtttagggcattttatttatgttagattcttcaagtgactatagaagggaaaaagactaagatgctttcttcattatctagtgaattgg |
342 |
Q |
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| T |
50788577 |
tgtttggtttggtttagggcattttatttatgttagattcttcaagtgactatagaagggaaaaagactaagatgctttcttcattatctagtgaattgg |
50788478 |
T |
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| Q |
343 |
gttggtaataaatacannnnnnnnnnnnacatttcatagtaatagaaattgatttgattaagattgtatggttttggtatggtttggtttgtcatgtttc |
442 |
Q |
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| T |
50788477 |
gttggtaataaatacattttttatttttacatttcatagcaatagaaattgatttgattaagattgtatggttttggtatggtttggtttgtcatgtttc |
50788378 |
T |
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| Q |
443 |
aatatttgttagtacggtgtgggcaaatgaaatggatggaaacatccacccacgtgaatgatctctgaaaactttct |
519 |
Q |
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| T |
50788377 |
aatatttgttagtacggtgtgggcaaatgaaatggatggaaacatccacccacgtgaatgatctctgaaaactttct |
50788301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 50788818 - 50788790
Alignment:
| Q |
1 |
acatataacaattcaattcaattaccttc |
29 |
Q |
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| T |
50788818 |
acatataacaattcaattcaattaccttc |
50788790 |
T |
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