View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_13 (Length: 511)
Name: NF5811_low_13
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 492
Target Start/End: Original strand, 1407344 - 1407836
Alignment:
| Q |
11 |
taattctcgaggatctacgattgtctgatatatgcattcattctgaggaatagcttgattctcttacaattcaatagtttgaaaccttaagcttacccaa |
110 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
1407344 |
taattctcgaggatctacgattgtctgatatatacattcattctaaggaatagcttgattctcttaccattcaatagttcgaaaccttaagcttacccaa |
1407443 |
T |
|
| Q |
111 |
attgactaaagcagatatcagtcaatgtttgt----attcatgttatacgatga-------ctctacttcatttctctctgcgtagatacatccactttg |
199 |
Q |
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| T |
1407444 |
attgactaaagcagatatcggtcaatgtttgtttgtattcatgttatatgatgaaaacagtctctacttcatttctctctgcgtagatacatccactttg |
1407543 |
T |
|
| Q |
200 |
tactacaacatagactacaaggtctgttttgttacgaataattacatggatcaacatgttgaacatcgacacatgtgattggtacgttcaaataacttca |
299 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1407544 |
tactacaacatagactacaaggtccgtttcgttacgaataattacatggatcaacatgttgaacatcgacacatgtgattggtacattcaaataacttca |
1407643 |
T |
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| Q |
300 |
ttttctcaaattaatactagtgttgttgtgttgtatcatgtactagttcttcatatatctcaattgaatacttgaatgggattgatgacaaataacaaaa |
399 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1407644 |
ttttctcaaattaatactagtgttattgtgttgtatcatgtactagttcttcatatatctcaattgaatacttgaatgggattgatgacaaataacaaag |
1407743 |
T |
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| Q |
400 |
ccaaaatatgatttatctggannnnnnngtttgtggagttttggcttaatttgataatgtgatttttgttacctaatttaggtgaatcggctg |
492 |
Q |
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| T |
1407744 |
ccaaaatatgatttatctggatttttttgtttgtggagttttggcttaatttgataatgtgatttttgttacctaatttaggtgaatcggctg |
1407836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 1396336 - 1396616
Alignment:
| Q |
11 |
taattctcgaggatctacgattgtctgatatatgcattcattctgaggaatagcttgattctcttacaattcaatagtttgaaacctta-agcttaccca |
109 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
1396336 |
taattctcgaggatctacgattgtctgatatatacattcattctgaggaatagcttgattctcttaaaattcaatagtttgaaaccttatagcttaccca |
1396435 |
T |
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| Q |
110 |
aattgactaaagcagatatcagtcaatgtttgtattcatgttatacgatga-------ctctacttcatttctctctgcgtagatacatccactttgtac |
202 |
Q |
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| T |
1396436 |
aattgactaaagcagatatcagtcaatgtttgtattcatgttatatgatgaaaacagtctctacttcatttctctctgcgtagatacatccactttgtac |
1396535 |
T |
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| Q |
203 |
tacaacatagactacaaggtctgttttgttacgaataattacatggatcaacatgttgaacatcgacacatgtgattggtac |
284 |
Q |
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|| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1396536 |
tataacatagactacaaggtctgtttcgttacgaacaattacat-gatcaacatgttgaacatcgacacatgtgattggtac |
1396616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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