View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5811_low_14 (Length: 508)

Name: NF5811_low_14
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5811_low_14
NF5811_low_14
[»] chr7 (24 HSPs)
chr7 (16-306)||(44962881-44963171)
chr7 (407-498)||(44963294-44963385)
chr7 (159-293)||(28124826-28124962)
chr7 (407-498)||(20046504-20046595)
chr7 (407-498)||(28014282-28014373)
chr7 (185-286)||(4895468-4895570)
chr7 (239-306)||(44962224-44962291)
chr7 (409-484)||(8405640-8405715)
chr7 (368-412)||(4895654-4895698)
chr7 (368-412)||(28124705-28124749)
chr7 (368-412)||(28126532-28126576)
chr7 (431-498)||(4895739-4895806)
chr7 (407-498)||(25471780-25471871)
chr7 (431-498)||(28124596-28124663)
chr7 (431-498)||(28126423-28126490)
chr7 (368-411)||(37405568-37405611)
chr7 (185-286)||(6323957-6324058)
chr7 (368-412)||(44963233-44963277)
chr7 (243-293)||(20046735-20046785)
chr7 (243-293)||(28126653-28126703)
chr7 (368-411)||(20046614-20046658)
chr7 (194-245)||(21631461-21631513)
chr7 (241-275)||(36989612-36989646)
chr7 (369-409)||(36989570-36989610)
[»] chr4 (25 HSPs)
chr4 (199-306)||(23564898-23565006)
chr4 (407-498)||(7040492-7040583)
chr4 (407-498)||(18656239-18656330)
chr4 (407-498)||(23564684-23564775)
chr4 (368-493)||(23566383-23566510)
chr4 (159-293)||(52520458-52520594)
chr4 (243-306)||(7040306-7040369)
chr4 (368-413)||(3529263-3529308)
chr4 (368-413)||(7040431-7040476)
chr4 (368-413)||(23564791-23564836)
chr4 (254-306)||(18656064-18656116)
chr4 (368-412)||(52520671-52520715)
chr4 (368-412)||(54296498-54296542)
chr4 (369-411)||(23985845-23985887)
chr4 (368-412)||(18656178-18656222)
chr4 (431-498)||(52518915-52518982)
chr4 (431-498)||(52520757-52520824)
chr4 (243-293)||(52518702-52518752)
chr4 (407-473)||(56074680-56074746)
chr4 (368-412)||(52518829-52518873)
chr4 (243-306)||(3274663-3274726)
chr4 (185-245)||(18807593-18807655)
chr4 (413-473)||(52545137-52545197)
chr4 (419-465)||(54296571-54296617)
chr4 (243-275)||(23566594-23566626)
[»] chr8 (26 HSPs)
chr8 (407-498)||(5567557-5567648)
chr8 (407-498)||(30224361-30224452)
chr8 (407-498)||(25249137-25249228)
chr8 (241-306)||(31032222-31032287)
chr8 (414-498)||(6428879-6428963)
chr8 (243-306)||(30224175-30224238)
chr8 (241-306)||(3375646-3375711)
chr8 (436-498)||(36535860-36535922)
chr8 (368-413)||(30224300-30224345)
chr8 (368-412)||(25249076-25249120)
chr8 (431-498)||(3375443-3375510)
chr8 (243-306)||(5567371-5567434)
chr8 (368-412)||(5567496-5567540)
chr8 (368-412)||(6428810-6428854)
chr8 (368-413)||(3375539-3375584)
chr8 (413-473)||(31032038-31032098)
chr8 (243-294)||(5567676-5567727)
chr8 (368-412)||(3379231-3379275)
chr8 (255-306)||(6428699-6428748)
chr8 (413-473)||(19473668-19473728)
chr8 (413-473)||(19544593-19544653)
chr8 (413-473)||(19588043-19588103)
chr8 (243-275)||(25248957-25248989)
chr8 (368-412)||(36535949-36535993)
chr8 (413-473)||(3379149-3379209)
chr8 (368-412)||(31032120-31032164)
[»] chr3 (11 HSPs)
chr3 (407-498)||(1140132-1140223)
chr3 (407-498)||(17402791-17402882)
chr3 (413-498)||(6789756-6789842)
chr3 (241-306)||(1139956-1140021)
chr3 (368-412)||(1140071-1140115)
chr3 (243-302)||(6789565-6789624)
chr3 (368-411)||(6789690-6789733)
chr3 (243-293)||(17403021-17403071)
chr3 (368-411)||(17402900-17402944)
chr3 (431-473)||(20302783-20302825)
chr3 (185-245)||(4608927-4608988)
[»] chr2 (12 HSPs)
chr2 (407-498)||(29758251-29758342)
chr2 (241-306)||(8759206-8759271)
chr2 (243-306)||(29758065-29758128)
chr2 (122-249)||(18776617-18776746)
chr2 (368-413)||(29758190-29758235)
chr2 (408-456)||(8759115-8759163)
chr2 (248-298)||(31155713-31155763)
chr2 (185-237)||(25306655-25306708)
chr2 (252-306)||(20516173-20516227)
chr2 (370-413)||(20516060-20516103)
chr2 (407-473)||(18612074-18612140)
chr2 (194-245)||(17308534-17308586)
[»] chr6 (28 HSPs)
chr6 (199-303)||(19645526-19645631)
chr6 (407-498)||(5377009-5377100)
chr6 (407-498)||(5378864-5378955)
chr6 (411-498)||(19645309-19645396)
chr6 (185-293)||(5378616-5378725)
chr6 (214-306)||(9414935-9415027)
chr6 (240-306)||(15149268-15149334)
chr6 (222-298)||(9415031-9415107)
chr6 (413-498)||(1088662-1088748)
chr6 (368-413)||(15868462-15868507)
chr6 (369-412)||(1088770-1088813)
chr6 (407-498)||(8915599-8915690)
chr6 (368-413)||(15866650-15866695)
chr6 (368-413)||(19645416-19645461)
chr6 (414-475)||(24544757-24544818)
chr6 (413-484)||(9415205-9415276)
chr6 (368-411)||(33866169-33866212)
chr6 (185-245)||(33869174-33869235)
chr6 (368-411)||(5376947-5376991)
chr6 (368-411)||(5378802-5378846)
chr6 (371-411)||(33869319-33869359)
chr6 (243-293)||(5376820-5376870)
chr6 (185-245)||(15868320-15868381)
chr6 (371-406)||(9415141-9415176)
chr6 (407-437)||(15149108-15149138)
chr6 (243-281)||(30376227-30376265)
chr6 (185-245)||(14620439-14620500)
chr6 (407-484)||(20985831-20985908)
[»] scaffold0311 (1 HSPs)
scaffold0311 (124-227)||(14914-15018)
[»] chr1 (16 HSPs)
chr1 (407-498)||(17449441-17449532)
chr1 (240-306)||(17449253-17449319)
chr1 (243-306)||(48940621-48940684)
chr1 (368-413)||(9312099-9312144)
chr1 (368-413)||(17449381-17449426)
chr1 (368-411)||(3282871-3282914)
chr1 (368-411)||(3284572-3284615)
chr1 (368-412)||(16808696-16808740)
chr1 (431-498)||(16808587-16808654)
chr1 (243-293)||(16808817-16808867)
chr1 (368-413)||(9310482-9310527)
chr1 (419-482)||(48941747-48941810)
chr1 (185-245)||(3284430-3284491)
chr1 (368-411)||(48941670-48941713)
chr1 (243-280)||(51020572-51020609)
chr1 (413-465)||(5924828-5924880)
[»] scaffold0189 (1 HSPs)
scaffold0189 (413-498)||(19082-19167)
[»] scaffold0057 (2 HSPs)
scaffold0057 (368-412)||(58856-58900)
scaffold0057 (413-473)||(58922-58982)
[»] scaffold0251 (2 HSPs)
scaffold0251 (368-411)||(6296-6339)
scaffold0251 (189-245)||(6158-6215)
[»] chr5 (6 HSPs)
chr5 (368-411)||(39787177-39787220)
chr5 (177-245)||(4895939-4896010)
chr5 (413-471)||(20012959-20013017)
chr5 (185-236)||(33689796-33689848)
chr5 (185-245)||(25502243-25502305)
chr5 (185-245)||(10412181-10412242)
[»] scaffold0006 (1 HSPs)
scaffold0006 (407-473)||(39275-39341)
[»] scaffold0245 (1 HSPs)
scaffold0245 (185-233)||(11027-11076)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 44962881 - 44963171
Alignment:
Q  16 ccttcaactcaaatttgaaacatgcatctgcctttcccaactgggctttggcctatacaatctgctggattcatcttggggctctttccatttcatcatt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44962881 ccttcaactcaaatttgaaacatgcatctgcctttcccaactgggctttggcctatacaatctgctggattcatcttggggctctttccatttcatcagt 44962980  T
Q  116 ttcttgtcttttactagtttacaccttatgttttacttcgtccttatagtatgcaaatttcaattgtaattcattgtatttcgaactcaaattgtgaatt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44962981 ttcttgtcttttactagtttacaccttatgttttacttcgtccttatagtatgcaaatttcaattgtaattcattgtatttcaaactcaaattgtgaatt 44963080  T
Q  216 ttcccattttgagtttgagggaggctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44963081 ttcccattttgagtttgagggaggctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 44963171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 407 - 498
Target Start/End: Original strand, 44963294 - 44963385
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  44963294 attcatttctacaatgaatttctttgagtatctccctcatgaatactcttatgcttgctatcttacttacatctatgacttttctccctatg 44963385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 159 - 293
Target Start/End: Complemental strand, 28124962 - 28124826
Alignment:
Q  159 ttatagtatgcaaatttcaattgtaatt-cattgtatttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctattaagatagttgga 256  Q
    |||||||||  ||||| |||||||| || ||||||||| | | ||||||||| ||||||| |||||||||||||||||||||||| |||| |||||||||    
T  28124962 ttatagtatataaattccaattgtactttcattgtattccaagctcaaattggtgaatttccccattttgagtttgagggaggctgttaaaatagttgga 28124863  T
Q  257 agttatgtggagttagttaaggtagttagacttgagt 293  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  28124862 agttatgtgtagttagttaaggtagttagactagagt 28124826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 407 - 498
Target Start/End: Complemental strand, 20046595 - 20046504
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  20046595 attcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatctcgcttacatctatgacttttctccctatg 20046504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 407 - 498
Target Start/End: Complemental strand, 28014373 - 28014282
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    ||||||||||||||||||||||| |||||||||||| |||||  ||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  28014373 attcatttctacaatgagtttctatgagtatctcccacatgagcactcttatgcttgctatcttgcttacatctatgatctttctccctatg 28014282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 4895468 - 4895570
Alignment:
Q  185 ttcattgtatttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctattaagatagttggaagttatgtggagttagttaaggtagtt 283  Q
    ||||||||||| | | ||||||||| ||| ||| |||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||    
T  4895468 ttcattgtattccaagctcaaattggtgattttccccattttgagtttgagggaggctgttaaaatagttggaagttatgtgtagttagttaaggtagtt 4895567  T
Q  284 aga 286  Q
    |||    
T  4895568 aga 4895570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 44962224 - 44962291
Alignment:
Q  239 gctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 306  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  44962224 gctattaacatagttggaagttatgtgaagttagttaaggtagttagacttgagtgagtaatcaacta 44962291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 409 - 484
Target Start/End: Original strand, 8405640 - 8405715
Alignment:
Q  409 tcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatga 484  Q
    |||||||||||||||||||||  || |||||||| |||||||||||||||| ||||||| |||||||||| |||||    
T  8405640 tcatttctacaatgagtttctacgattatctcccccatgaatactcttatgcttgctattttgcttacatatatga 8405715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 4895654 - 4895698
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcat 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4895654 ctcaaactaatctctatatataggaacactattgtactcattcat 4895698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 28124749 - 28124705
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcat 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28124749 ctcaaactaatctctatatataggaacactattgtactcattcat 28124705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 28126576 - 28126532
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcat 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28126576 ctcaaactaatctctatatataggaacactattgtactcattcat 28126532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 431 - 498
Target Start/End: Original strand, 4895739 - 4895806
Alignment:
Q  431 tgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    ||||||||||||  |||| |||||||||||||||| ||||||||||||||||||  ||||||||||||    
T  4895739 tgagtatctcccagatgagtactcttatgtttgctctcttgcttacatctatgatctttctccctatg 4895806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 407 - 498
Target Start/End: Complemental strand, 25471871 - 25471780
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    |||||||| || ||||||||||| | |||||||||| | |||||| ||||||| |||||||||| |||||||||||||  ||||||| ||||    
T  25471871 attcatttatataatgagtttctattagtatctcccacgtgaataatcttatgcttgctatctttcttacatctatgatctttctccttatg 25471780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 431 - 498
Target Start/End: Complemental strand, 28124663 - 28124596
Alignment:
Q  431 tgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    |||||||||||| ||||| |||||||||| ||||| ||||||||||||||||||  ||||||||||||    
T  28124663 tgagtatctcccacatgagtactcttatgcttgctctcttgcttacatctatgatctttctccctatg 28124596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 431 - 498
Target Start/End: Complemental strand, 28126490 - 28126423
Alignment:
Q  431 tgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    |||||||||||| ||||| |||||||||| ||||| ||||||||||||||||||  ||||||||||||    
T  28126490 tgagtatctcccacatgagtactcttatgcttgctctcttgcttacatctatgatctttctccctatg 28126423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 37405611 - 37405568
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattca 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37405611 ctcaaactaatctctatatataggaacactattgtactcattca 37405568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 6323957 - 6324058
Alignment:
Q  185 ttcattgtatttcgaactcaaattgtgaattttcccattttgagtttgagggaggctattaagatagttggaagttatgtggagttagttaaggtagtta 284  Q
    |||||||||||   ||||||||| ||| |||| |||||||||||||||||| ||  | |||| ||||| | ||||||||||||||||||| || ||||||    
T  6323957 ttcattgtattcgaaactcaaatagtggatttccccattttgagtttgaggtagattgttaaaatagtagaaagttatgtggagttagtttagatagtta 6324056  T
Q  285 ga 286  Q
    ||    
T  6324057 ga 6324058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 44963233 - 44963277
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcat 412  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  44963233 ctcaaattaatctctatatataggaacactattgtactcattcat 44963277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 20046785 - 20046735
Alignment:
Q  243 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagt 293  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| ||||    
T  20046785 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagt 20046735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 28126703 - 28126653
Alignment:
Q  243 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagt 293  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| ||||    
T  28126703 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagt 28126653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 20046658 - 20046614
Alignment:
Q  368 ctcaaactaatctct-atatataggaacactattgtactcattca 411  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  20046658 ctcaaactaatctcttatatataggaacactattgtactcattca 20046614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 21631513 - 21631461
Alignment:
Q  194 tttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctatta 245  Q
    |||| ||||||||||| ||||||||||||||||||||||||||| | ||||||    
T  21631513 tttcaaactcaaattggtgaattttcccattttgagtttgagggggactatta 21631461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 275
Target Start/End: Complemental strand, 36989646 - 36989612
Alignment:
Q  241 tattaagatagttggaagttatgtggagttagtta 275  Q
    |||||||||||||||||||||||| ||||||||||    
T  36989646 tattaagatagttggaagttatgtagagttagtta 36989612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 36989610 - 36989570
Alignment:
Q  369 tcaaactaatctctatatataggaacactattgtactcatt 409  Q
    |||||||||||||||||||||| |||| ||||||| |||||    
T  36989610 tcaaactaatctctatatatagaaacattattgtagtcatt 36989570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 7e-38; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 199 - 306
Target Start/End: Complemental strand, 23565006 - 23564898
Alignment:
Q  199 aactcaaattgt-gaattttcccattttgagtttgagggaggctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagt 297  Q
    |||||||||||  |||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23565006 aactcaaattggcgaatttccccgttttgagtttgagggaggctgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagt 23564907  T
Q  298 aatcaacta 306  Q
    |||||||||    
T  23564906 aatcaacta 23564898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 407 - 498
Target Start/End: Original strand, 7040492 - 7040583
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7040492 attcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 7040583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 407 - 498
Target Start/End: Original strand, 18656239 - 18656330
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18656239 attcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 18656330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 407 - 498
Target Start/End: Complemental strand, 23564775 - 23564684
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  23564775 attcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctattttgcttacatctatgacttttctccctatg 23564684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 368 - 493
Target Start/End: Complemental strand, 23566510 - 23566383
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcatt-tctacaatgagttt-ctttgagtatctccctcatgaatactcttatgtttgct 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||   || | | | ||||||||||||||||||||  |||||||||| |||||    
T  23566510 ctcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctactttgagtatctccctcatgggtactcttatgcttgct 23566411  T
Q  466 atcttgcttacatctatgacttttctcc 493  Q
    ||||||||||||||||||||||||||||    
T  23566410 atcttgcttacatctatgacttttctcc 23566383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 159 - 293
Target Start/End: Original strand, 52520458 - 52520594
Alignment:
Q  159 ttatagtatgcaaatttcaattgtaatt-cattgtatttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctattaagatagttgga 256  Q
    |||||||||  ||||| |||||||| || ||||||||| | | ||||||||| ||||||| |||||||||||||||||||||||| |||| |||||||||    
T  52520458 ttatagtatataaattccaattgtactttcattgtattccaagctcaaattggtgaatttccccattttgagtttgagggaggctgttaaaatagttgga 52520557  T
Q  257 agttatgtggagttagttaaggtagttagacttgagt 293  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  52520558 agttatgtgtagttagttaaggtagttagactagagt 52520594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 7040306 - 7040369
Alignment:
Q  243 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7040306 ttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaacta 7040369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 413
Target Start/End: Complemental strand, 3529308 - 3529263
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcatt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3529308 ctcaaactaatctctatatataggaacactattgtactcattcatt 3529263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 7040431 - 7040476
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcatt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7040431 ctcaaactaatctctatatataggaacactattgtactcattcatt 7040476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 413
Target Start/End: Complemental strand, 23564836 - 23564791
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcatt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23564836 ctcaaactaatctctatatataggaacactattgtactcattcatt 23564791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 18656064 - 18656116
Alignment:
Q  254 ggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 306  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  18656064 ggaagttatgtgaagttagttaaggtagttagactagagttagtaatcaacta 18656116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 52520671 - 52520715
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcat 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  52520671 ctcaaactaatctctatatataggaacactattgtactcattcat 52520715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 54296498 - 54296542
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcat 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  54296498 ctcaaactaatctctatatataggaacactattgtactcattcat 54296542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 411
Target Start/End: Original strand, 23985845 - 23985887
Alignment:
Q  369 tcaaactaatctctatatataggaacactattgtactcattca 411  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23985845 tcaaactaatctctatatataggaacactattgtactcattca 23985887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 18656178 - 18656222
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcat 412  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  18656178 ctcaaactaatctctatatataggaaaactattgtactcattcat 18656222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 498
Target Start/End: Original strand, 52518915 - 52518982
Alignment:
Q  431 tgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    |||||||||||| ||||| | |||||||| ||||| ||||||||||||||||||  ||||||||||||    
T  52518915 tgagtatctcccacatgagttctcttatgcttgctctcttgcttacatctatgatctttctccctatg 52518982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 498
Target Start/End: Original strand, 52520757 - 52520824
Alignment:
Q  431 tgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    |||||||||||| ||||| |||||||||| ||||| |||| |||||||||||||  ||||||||||||    
T  52520757 tgagtatctcccacatgagtactcttatgcttgctctctttcttacatctatgatctttctccctatg 52520824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 52518702 - 52518752
Alignment:
Q  243 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagt 293  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| ||||    
T  52518702 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagt 52518752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 407 - 473
Target Start/End: Complemental strand, 56074746 - 56074680
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgct 473  Q
    ||||||||||| || |||||||| |||||||||||| ||||| |||||||||| ||||| |||||||    
T  56074746 attcatttctataacgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgct 56074680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 52518829 - 52518873
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcat 412  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||    
T  52518829 ctcaaactaatctctatatataggaacactgttgtactcaatcat 52518873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 3274726 - 3274663
Alignment:
Q  243 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 306  Q
    |||| ||||||||||||||| || |||||||||||||||| | |||  ||||||||||||||||    
T  3274726 ttaaaatagttggaagttatatgaagttagttaaggtagtaaaactatagttagtaatcaacta 3274663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 18807655 - 18807593
Alignment:
Q  185 ttcattgtatttcgaactcaaatt--gtgaattttcccattttgagtttgagggaggctatta 245  Q
    ||||||||||||| |||||||| |  |||||||||||||||||||||||||||| | ||||||    
T  18807655 ttcattgtatttcaaactcaaaattggtgaattttcccattttgagtttgagggggactatta 18807593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 473
Target Start/End: Complemental strand, 52545197 - 52545137
Alignment:
Q  413 ttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgct 473  Q
    ||||| ||||||||||| |||||||||||| ||||| |||||||||| | ||| |||||||    
T  52545197 ttctataatgagtttctatgagtatctcccacatgagtactcttatgctcgctttcttgct 52545137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 465
Target Start/End: Original strand, 54296571 - 54296617
Alignment:
Q  419 aatgagtttctttgagtatctccctcatgaatactcttatgtttgct 465  Q
    ||||||||||| |||||||||||||||| | |||||||||| |||||    
T  54296571 aatgagtttctatgagtatctccctcatcagtactcttatgcttgct 54296617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 23566626 - 23566594
Alignment:
Q  243 ttaagatagttggaagttatgtggagttagtta 275  Q
    |||||||||||| ||||||||||||||||||||    
T  23566626 ttaagatagttgaaagttatgtggagttagtta 23566594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 407 - 498
Target Start/End: Original strand, 5567557 - 5567648
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5567557 attcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 5567648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 407 - 498
Target Start/End: Original strand, 30224361 - 30224452
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30224361 attcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 30224452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 407 - 498
Target Start/End: Original strand, 25249137 - 25249228
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||||||||||||| |||||||||||||||||||    
T  25249137 attcatttctacaatgagttactttgagtatctccctcatgagtacccttatgcttgctatcttgcttacatatatgacttttctccctatg 25249228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 31032287 - 31032222
Alignment:
Q  241 tattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31032287 tattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 31032222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 414 - 498
Target Start/End: Original strand, 6428879 - 6428963
Alignment:
Q  414 tctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||||| ||||| ||||    
T  6428879 tctacaatgagtttctttgagtatctctcacatgagtactcttatgtttgctatcttacttacatctatgacttctctccttatg 6428963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 30224175 - 30224238
Alignment:
Q  243 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30224175 ttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaacta 30224238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 3375711 - 3375646
Alignment:
Q  241 tattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  3375711 tattaagatagttggaagttatgtggagttagttaaggtagttagacttctgttagtaatcaacta 3375646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 436 - 498
Target Start/End: Complemental strand, 36535922 - 36535860
Alignment:
Q  436 atctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    ||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  36535922 atctcccacatgagtactcttatgcttgctatcttgcttacatctatgacctttctccctatg 36535860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 30224300 - 30224345
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcatt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30224300 ctcaaactaatctctatatataggaacactattgtactcattcatt 30224345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 25249076 - 25249120
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcat 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25249076 ctcaaactaatctctatatataggaacactattgtactcattcat 25249120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 431 - 498
Target Start/End: Complemental strand, 3375510 - 3375443
Alignment:
Q  431 tgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    |||||||||||| ||||| ||||||| || |||||||||| |||||||||||||| ||||||||||||    
T  3375510 tgagtatctcccacatgagtactcttttgcttgctatcttacttacatctatgacctttctccctatg 3375443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 5567371 - 5567434
Alignment:
Q  243 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 306  Q
    |||| |||| ||||||||||||| |||||||||| ||||||||||| |||||||||||||||||    
T  5567371 ttaaaatagctggaagttatgtgaagttagttaaagtagttagactagagttagtaatcaacta 5567434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 5567496 - 5567540
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcat 412  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  5567496 ctcaaactaatctctatatataggaaaactattgtactcattcat 5567540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 6428810 - 6428854
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcat 412  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  6428810 ctcaaactaatctctatatataggaacactattgtaatcattcat 6428854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 413
Target Start/End: Complemental strand, 3375584 - 3375539
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcatt 413  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||    
T  3375584 ctcaaactaatctctatatataggaactctattgtacccattcatt 3375539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 473
Target Start/End: Complemental strand, 31032098 - 31032038
Alignment:
Q  413 ttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgct 473  Q
    ||||| ||||||||||| |||||||||||| ||||| |||||||||| ||||| |||||||    
T  31032098 ttctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgct 31032038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 5567727 - 5567676
Alignment:
Q  243 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagtt 294  Q
    |||| |||| ||||||||||||| |||||||||||||||||||||| |||||    
T  5567727 ttaaaatagctggaagttatgtgaagttagttaaggtagttagactagagtt 5567676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 3379275 - 3379231
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcat 412  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||    
T  3379275 ctcaaactaatctctatattaaggaaaactattgtactcattcat 3379231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 6428699 - 6428748
Alignment:
Q  255 gaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 306  Q
    |||||||||||||||||||||  ||||||||||  |||||||||||||||||    
T  6428699 gaagttatgtggagttagtta--gtagttagacaagagttagtaatcaacta 6428748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 473
Target Start/End: Original strand, 19473668 - 19473728
Alignment:
Q  413 ttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgct 473  Q
    ||||| ||||||||||| |||||||||||| ||||| |||||||||  ||||| |||||||    
T  19473668 ttctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgct 19473728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 473
Target Start/End: Original strand, 19544593 - 19544653
Alignment:
Q  413 ttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgct 473  Q
    ||||| ||||||||||| |||||||||||| ||||| |||||||||  ||||| |||||||    
T  19544593 ttctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgct 19544653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 473
Target Start/End: Complemental strand, 19588103 - 19588043
Alignment:
Q  413 ttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgct 473  Q
    ||||| ||||||||||| |||||||||||| ||||| |||||||||  ||||| |||||||    
T  19588103 ttctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgct 19588043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 25248957 - 25248989
Alignment:
Q  243 ttaagatagttggaagttatgtggagttagtta 275  Q
    |||||||||||||||||||||||||||||||||    
T  25248957 ttaagatagttggaagttatgtggagttagtta 25248989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 36535993 - 36535949
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcat 412  Q
    ||||||||||||||||||||||| || ||| ||||||||||||||    
T  36535993 ctcaaactaatctctatatatagcaatactgttgtactcattcat 36535949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 473
Target Start/End: Complemental strand, 3379209 - 3379149
Alignment:
Q  413 ttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgct 473  Q
    ||||| ||||||||||| |||||||||||| ||||| |||| ||||  ||||| |||||||    
T  3379209 ttctataatgagtttctatgagtatctcccacatgagtacttttatacttgctttcttgct 3379149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 31032164 - 31032120
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcat 412  Q
    |||||||||||||||||||||||||||| || |  ||||||||||    
T  31032164 ctcaaactaatctctatatataggaacattactacactcattcat 31032120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 407 - 498
Target Start/End: Original strand, 1140132 - 1140223
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1140132 attcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 1140223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 407 - 498
Target Start/End: Complemental strand, 17402882 - 17402791
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17402882 attcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 17402791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 413 - 498
Target Start/End: Original strand, 6789756 - 6789842
Alignment:
Q  413 ttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatc-ttgcttacatctatgacttttctccctatg 498  Q
    ||||||||||||||||| |||||||||||| ||||| |||||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  6789756 ttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatctttgcttacatctatgacttctctccctatg 6789842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 1139956 - 1140021
Alignment:
Q  241 tattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 306  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  1139956 tattaagatagttggaagttatatggagttagttaaggtagttggacttgagttagtaatcaacta 1140021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 1140071 - 1140115
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcat 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1140071 ctcaaactaatctctatatataggaacactattgtactcattcat 1140115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 6789565 - 6789624
Alignment:
Q  243 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatca 302  Q
    |||| |||||||||||| ||||| |||||||||||||||||||||| ||||| |||||||    
T  6789565 ttaaaatagttggaagtaatgtgtagttagttaaggtagttagactagagttggtaatca 6789624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 6789690 - 6789733
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattca 411  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  6789690 ctcaaactaatctctatatataggaatactattgtactcattca 6789733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 17403071 - 17403021
Alignment:
Q  243 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagt 293  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| ||||    
T  17403071 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagt 17403021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 17402944 - 17402900
Alignment:
Q  368 ctcaaactaatctct-atatataggaacactattgtactcattca 411  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  17402944 ctcaaactaatctcttatatataggaacactattgtactcattca 17402900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 473
Target Start/End: Original strand, 20302783 - 20302825
Alignment:
Q  431 tgagtatctccctcatgaatactcttatgtttgctatcttgct 473  Q
    ||||||||||||||||||||| || |||||||||| |||||||    
T  20302783 tgagtatctccctcatgaatagtcctatgtttgctttcttgct 20302825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 4608927 - 4608988
Alignment:
Q  185 ttcattgtatttcgaactcaaatt-gtgaattttcccattttgagtttgagggaggctatta 245  Q
    ||||| |||| || |||||||||| ||||||||| |||||||||||||||||| | ||||||    
T  4608927 ttcatagtatctcaaactcaaattagtgaatttttccattttgagtttgagggggactatta 4608988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 407 - 498
Target Start/End: Original strand, 29758251 - 29758342
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29758251 attcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 29758342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 8759271 - 8759206
Alignment:
Q  241 tattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8759271 tattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 8759206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 29758065 - 29758128
Alignment:
Q  243 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  29758065 ttaagatagttggaagttatgtggagttagttaaggtagttagactagacttagtaatcaacta 29758128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 122 - 249
Target Start/End: Original strand, 18776617 - 18776746
Alignment:
Q  122 tcttttactagtttacaccttatgtttt-acttcgtccttatagtatgcaaatttcaattgtaattcattgtatttcgaactcaaatt-gtgaattttcc 219  Q
    |||||||||||||||||||   |||||| | || || ||||||||||||| ||||||||||||||||||| |||| | |||| ||||| ||||||||  |    
T  18776617 tcttttactagtttacaccccttgtttttaattagttcttatagtatgcacatttcaattgtaattcattttattccaaactgaaattggtgaatttctc 18776716  T
Q  220 cattttgagtttgagggaggctattaagat 249  Q
    |||||||||||| ||||||||| |||||||    
T  18776717 cattttgagtttaagggaggctgttaagat 18776746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 29758190 - 29758235
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcatt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29758190 ctcaaactaatctctatatataggaacactattgtactcattcatt 29758235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 408 - 456
Target Start/End: Complemental strand, 8759163 - 8759115
Alignment:
Q  408 ttcatttctacaatgagtttctttgagtatctccctcatgaatactctt 456  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8759163 ttcatttctacaatgagtttctttgagtatctccctcatgagtactctt 8759115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 31155763 - 31155713
Alignment:
Q  248 atagttggaagttatgtggagttagttaaggtagttagacttgagttagta 298  Q
    |||||||||||||||| |||||||||||||||||||| ||| |||||||||    
T  31155763 atagttggaagttatgcggagttagttaaggtagttaaactagagttagta 31155713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 25306655 - 25306708
Alignment:
Q  185 ttcattgtatttcgaactcaaattg-tgaattttcccattttgagtttgaggga 237  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||||||||    
T  25306655 ttcattgtatttcaaactcaaattggtgaattttcccactttgagtttgaggga 25306708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 20516227 - 20516173
Alignment:
Q  252 ttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 306  Q
    |||||||||||||| |||||||||||||| ||| ||| ||||||||||| |||||    
T  20516227 ttggaagttatgtgcagttagttaaggtaattaaactggagttagtaattaacta 20516173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 413
Target Start/End: Complemental strand, 20516103 - 20516060
Alignment:
Q  370 caaactaatctctatatataggaacactattgtactcattcatt 413  Q
    ||||||||| | |||||||| |||||||||||||||||||||||    
T  20516103 caaactaatttttatatataagaacactattgtactcattcatt 20516060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 473
Target Start/End: Complemental strand, 18612140 - 18612074
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgct 473  Q
    ||||||||||| ||||||||| | | | |||||||| ||||| |||||||||| ||||| |||||||    
T  18612140 attcatttctataatgagtttttgtaaatatctcccacatgagtactcttatgcttgctttcttgct 18612074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 17308534 - 17308586
Alignment:
Q  194 tttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctatta 245  Q
    |||| ||||||||||| ||||||| ||||||||||||||||||| | ||||||    
T  17308534 tttcaaactcaaattggtgaatttccccattttgagtttgagggggactatta 17308586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 19645631 - 19645526
Alignment:
Q  199 aactcaaattg-tgaattttcccattttgagtttgagggaggctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagt 297  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||    
T  19645631 aactcaaattggtgaatttccccattttgagtttgagggaggctcttaagatagttagaagatatgtggagttagttaaggtagttagactagagttagt 19645532  T
Q  298 aatcaa 303  Q
    ||||||    
T  19645531 aatcaa 19645526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 407 - 498
Target Start/End: Original strand, 5377009 - 5377100
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5377009 attcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 5377100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 407 - 498
Target Start/End: Original strand, 5378864 - 5378955
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5378864 attcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 5378955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 411 - 498
Target Start/End: Complemental strand, 19645396 - 19645309
Alignment:
Q  411 atttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  19645396 atttctacaatgaatttctttgagtatctccctcatgagtactcttatacttgctatcttggttacatctatgacttttctccctatg 19645309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 5378616 - 5378725
Alignment:
Q  185 ttcattgtatttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctattaagatagttggaagttatgtggagttagttaaggtagtt 283  Q
    ||||||||||| | | ||||||||| ||||||| |||||||||||||||||||||||| ||||  ||||||||||||||||| |||||||||||||||||    
T  5378616 ttcattgtattccaatctcaaattggtgaatttccccattttgagtttgagggaggctgttaaattagttggaagttatgtgtagttagttaaggtagtt 5378715  T
Q  284 agacttgagt 293  Q
    ||||| ||||    
T  5378716 agactagagt 5378725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 214 - 306
Target Start/End: Original strand, 9414935 - 9415027
Alignment:
Q  214 ttttcccattttgagtttgagggaggctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 306  Q
    |||| ||||||||||||| ||||||||| |||| |||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||    
T  9414935 tttttccattttgagtttaagggaggctgttaaaatagttggaagttatgcggagttagttaaggtagttagactagagttagtgatcaacta 9415027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 15149334 - 15149268
Alignment:
Q  240 ctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 306  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15149334 ctattaagatagttggaagttatgcggagttagttaaggtagttagacttgagttagtaatcaacta 15149268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 9415031 - 9415107
Alignment:
Q  222 ttttgagtttgagggaggctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagta 298  Q
    |||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  9415031 ttttgagtttaagggaggctgttaaaatagttggaagttatgtggagttagttaaggaagttagactagagttagta 9415107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 413 - 498
Target Start/End: Complemental strand, 1088748 - 1088662
Alignment:
Q  413 ttctacaatgagtttcttt-gagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    ||||| ||||||||||||| |||||||||||  |||| |||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  1088748 ttctataatgagtttcttttgagtatctcccatatgagtactcttatgtttgctatcttgcttacatctatgacttctcttcctatg 1088662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 15868462 - 15868507
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcatt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  15868462 ctcaaactaatctctatatataggaacactattgtactcattcatt 15868507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 369 - 412
Target Start/End: Complemental strand, 1088813 - 1088770
Alignment:
Q  369 tcaaactaatctctatatataggaacactattgtactcattcat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1088813 tcaaactaatctctatatataggaacactattgtactcattcat 1088770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 407 - 498
Target Start/End: Original strand, 8915599 - 8915690
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    ||||||||||| ||| ||||||| ||||||||| || || || |||||||||| ||||| |||||||||||||||||| |||| || |||||    
T  8915599 attcatttctataataagtttctatgagtatcttccacacgagtactcttatgcttgctctcttgcttacatctatgatttttatctctatg 8915690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 15866650 - 15866695
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcatt 413  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  15866650 ctcaaactaatctctatatttaggaacactattgtactcattcatt 15866695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 413
Target Start/End: Complemental strand, 19645461 - 19645416
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcatt 413  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  19645461 ctcaaactaatctctatatataagaacactattgtactcattcatt 19645416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 475
Target Start/End: Original strand, 24544757 - 24544818
Alignment:
Q  414 tctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgctta 475  Q
    ||||| |||||||||| |||||||||||||||||| |||||||||| ||||| |||||||||    
T  24544757 tctactatgagtttctatgagtatctccctcatgagtactcttatgcttgctttcttgctta 24544818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 484
Target Start/End: Original strand, 9415205 - 9415276
Alignment:
Q  413 ttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatga 484  Q
    ||||||||||||||||| |||||||||||| ||||| |||||||||||||| | | ||| |||||| |||||    
T  9415205 ttctacaatgagtttctatgagtatctcccacatgagtactcttatgtttgttcttttgtttacatttatga 9415276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 33866169 - 33866212
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattca 411  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  33866169 ctcagactaatctctatatataggaacactattgtactcattca 33866212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 33869174 - 33869235
Alignment:
Q  185 ttcattgtatttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctatta 245  Q
    |||||||| |||| ||||||||||| ||||||||||||||||||||||||||| | ||||||    
T  33869174 ttcattgtttttcaaactcaaattggtgaattttcccattttgagtttgagggggactatta 33869235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 5376947 - 5376991
Alignment:
Q  368 ctcaaactaatctct-atatataggaacactattgtactcattca 411  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  5376947 ctcaaactaatctcttatatataggaacactattgtactcattca 5376991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 5378802 - 5378846
Alignment:
Q  368 ctcaaactaatctct-atatataggaacactattgtactcattca 411  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  5378802 ctcaaactaatctcttatatataggaacactattgtactcattca 5378846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 33869319 - 33869359
Alignment:
Q  371 aaactaatctctatatataggaacactattgtactcattca 411  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  33869319 aaactaatctctatatataggaacactattgtacgcattca 33869359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 5376820 - 5376870
Alignment:
Q  243 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagt 293  Q
    |||| ||||||||||||||| || |||||||||||||||||||||| ||||    
T  5376820 ttaaaatagttggaagttatatgtagttagttaaggtagttagactagagt 5376870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 15868320 - 15868381
Alignment:
Q  185 ttcattgtatttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctatta 245  Q
    |||||||| |||| ||||||||||| ||||||| ||||||||||||||||||| | ||||||    
T  15868320 ttcattgtttttcaaactcaaattggtgaatttccccattttgagtttgagggggactatta 15868381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 406
Target Start/End: Original strand, 9415141 - 9415176
Alignment:
Q  371 aaactaatctctatatataggaacactattgtactc 406  Q
    ||||||||||||||||||| ||||||||||||||||    
T  9415141 aaactaatctctatatataagaacactattgtactc 9415176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 437
Target Start/End: Complemental strand, 15149138 - 15149108
Alignment:
Q  407 attcatttctacaatgagtttctttgagtat 437  Q
    |||||||||||||||||||||||||||||||    
T  15149138 attcatttctacaatgagtttctttgagtat 15149108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 281
Target Start/End: Original strand, 30376227 - 30376265
Alignment:
Q  243 ttaagatagttggaagttatgtggagttagttaaggtag 281  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  30376227 ttaaaatagttggaagttatgtggagttagttaacgtag 30376265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 14620439 - 14620500
Alignment:
Q  185 ttcattgtatttcgaactcaaatt-gtgaattttcccattttgagtttgagggaggctatta 245  Q
    ||||||||||||| |||||||||| |||||||| |||||||| | |||||||| | ||||||    
T  14620439 ttcattgtatttcaaactcaaattggtgaatttccccattttaaatttgagggggactatta 14620500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 484
Target Start/End: Complemental strand, 20985908 - 20985831
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatga 484  Q
    ||||||||||| ||||| ||| | | ||||||| || ||||| |||||||||| |||| | |||| ||||||||||||    
T  20985908 attcatttctataatgaatttttataagtatctaccacatgagtactcttatgcttgcaaacttgattacatctatga 20985831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 124 - 227
Target Start/End: Original strand, 14914 - 15018
Alignment:
Q  124 ttttactagtttacaccttatgttttacttcgtccttatagtatgcaaatttcaattgtaattcattgtatttcgaactcaaatt-gtgaattttcccat 222  Q
    ||||||||||||||||| | ||||| |||| || ||| |||||||||||||||||||||||||||||||||| | |||||||||| |||||||| |||||    
T  14914 ttttactagtttacaccctttgtttgacttagttcttgtagtatgcaaatttcaattgtaattcattgtattccaaactcaaattggtgaatttccccat 15013  T
Q  223 tttga 227  Q
    |||||    
T  15014 tttga 15018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 407 - 498
Target Start/End: Original strand, 17449441 - 17449532
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    |||||| ||||||||||| |||| |||||||||||| ||||| ||||||| || ||||||||||||||||||||||||| ||||||||||||    
T  17449441 attcatgtctacaatgagattctatgagtatctcccacatgagtactcttttgcttgctatcttgcttacatctatgacctttctccctatg 17449532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 17449253 - 17449319
Alignment:
Q  240 ctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 306  Q
    |||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  17449253 ctattatgatagttggaagttatatggagttagttaaggtagttggacttgagttagtaatcaacta 17449319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 48940621 - 48940684
Alignment:
Q  243 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 306  Q
    |||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  48940621 ttaaaatagttggaagttatgtggagttagttaaggtagttagacaagagttagtaatcaacta 48940684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 9312099 - 9312144
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcatt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9312099 ctcaaactaatctctatatataggaacactattgtactcattcatt 9312144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 17449381 - 17449426
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcatt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  17449381 ctcaaactaatctctatatataggaacactattgtactcattcatt 17449426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 3282871 - 3282914
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattca 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3282871 ctcaaactaatctctatatataggaacactattgtactcattca 3282914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 3284572 - 3284615
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattca 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3284572 ctcaaactaatctctatatataggaacactattgtactcattca 3284615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 16808740 - 16808696
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcat 412  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  16808740 ctcaaactaatctctatatatatgaacactattgtactcattcat 16808696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 498
Target Start/End: Complemental strand, 16808654 - 16808587
Alignment:
Q  431 tgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    |||||||||||  ||||| |||||||||| ||||| ||||||||||||||||||  ||||||||||||    
T  16808654 tgagtatctccgacatgagtactcttatgcttgctctcttgcttacatctatgatctttctccctatg 16808587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 16808867 - 16808817
Alignment:
Q  243 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagt 293  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| ||||    
T  16808867 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagt 16808817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 9310482 - 9310527
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcatt 413  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||    
T  9310482 ctcaaattaatatctatatataggaacactattgtactcattcatt 9310527  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 419 - 482
Target Start/End: Original strand, 48941747 - 48941810
Alignment:
Q  419 aatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctat 482  Q
    ||||||||| | |||||||||| | |||||||||||||||  ||||| ||||||||||||||||    
T  48941747 aatgagtttatatgagtatctctcacatgaatactcttatacttgctctcttgcttacatctat 48941810  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 3284430 - 3284491
Alignment:
Q  185 ttcattgtatttcgaactcaaatt-gtgaattttcccattttgagtttgagggaggctatta 245  Q
    ||||||||||||| |||||||||| |||| |||||||| |||||||||||||| | ||||||    
T  3284430 ttcattgtatttcaaactcaaattggtgagttttcccactttgagtttgagggggactatta 3284491  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 48941670 - 48941713
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattca 411  Q
    |||||||||||||||||| |||  ||||||||||||||||||||    
T  48941670 ctcaaactaatctctatacatataaacactattgtactcattca 48941713  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 51020572 - 51020609
Alignment:
Q  243 ttaagatagttggaagttatgtggagttagttaaggta 280  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  51020572 ttaaaatagttggaagttatgtggagttggttaaggta 51020609  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 5924880 - 5924828
Alignment:
Q  413 ttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgct 465  Q
    ||||| ||||||||||| |||||||||||   ||||||||||||||| |||||    
T  5924880 ttctataatgagtttctatgagtatctcctatatgaatactcttatgcttgct 5924828  T

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Target: scaffold0189 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 413 - 498
Target Start/End: Original strand, 19082 - 19167
Alignment:
Q  413 ttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgcttacatctatgacttttctccctatg 498  Q
    ||||| ||||||||||| |||| ||||||| ||||| ||||| |||| || ||||||||||||||||||||| |||||||||||||    
T  19082 ttctataatgagtttctatgagcatctcccacatgagtactcctatgctttctatcttgcttacatctatgatttttctccctatg 19167  T

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Target: scaffold0057 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 58856 - 58900
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattcat 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  58856 ctcaaactaatctctatatataggaacactattgtactcattcat 58900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 473
Target Start/End: Original strand, 58922 - 58982
Alignment:
Q  413 ttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgct 473  Q
    ||||| ||||||||||| |||||||||||| ||||| |||||||||| ||||| |||||||    
T  58922 ttctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgct 58982  T

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Target: scaffold0251 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 6296 - 6339
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattca 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6296 ctcaaactaatctctatatataggaacactattgtactcattca 6339  T

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Target: scaffold0251; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 6158 - 6215
Alignment:
Q  189 ttgtatttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctatta 245  Q
    ||||||||| ||||||||||| ||| ||| ||||||||||||||||||| | ||||||    
T  6158 ttgtatttcaaactcaaattggtgattttccccattttgagtttgagggggactatta 6215  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 39787220 - 39787177
Alignment:
Q  368 ctcaaactaatctctatatataggaacactattgtactcattca 411  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  39787220 ctcaaactaatctctatatataggaacactattttactcattca 39787177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 4896010 - 4895939
Alignment:
Q  177 aattgtaatt--cattgtatttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctatta 245  Q
    ||||||||||  ||||||||||| ||||||||||| ||||||| ||||||||||||||||||| | ||||||    
T  4896010 aattgtaatttccattgtatttcaaactcaaattggtgaatttccccattttgagtttgagggggactatta 4895939  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 471
Target Start/End: Complemental strand, 20013017 - 20012959
Alignment:
Q  413 ttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttg 471  Q
    ||||| ||||||||||| |||||||||||| ||||| |||||||||| ||||| |||||    
T  20013017 ttctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttg 20012959  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 33689796 - 33689848
Alignment:
Q  185 ttcattgtatttcgaactcaaattg-tgaattttcccattttgagtttgaggg 236  Q
    |||||||| |||| ||||||||||| ||||||| |||||||||||||||||||    
T  33689796 ttcattgtgtttcaaactcaaattggtgaatttccccattttgagtttgaggg 33689848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 25502305 - 25502243
Alignment:
Q  185 ttcattgtattt-cgaactcaaattg-tgaattttcccattttgagtttgagggaggctatta 245  Q
    |||||||||||| | ||||||||||| ||||||| ||||||||||||||||||| | ||||||    
T  25502305 ttcattgtattttcaaactcaaattggtgaatttccccattttgagtttgagggggactatta 25502243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 10412181 - 10412242
Alignment:
Q  185 ttcattgtatttcgaactcaaattgtgaattttc-ccattttgagtttgagggaggctatta 245  Q
    ||||||||||||| |||||||||||  ||||||| | |||||||||||||||| | ||||||    
T  10412181 ttcattgtatttcaaactcaaattggtaattttctcaattttgagtttgagggggactatta 10412242  T

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Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 473
Target Start/End: Original strand, 39275 - 39341
Alignment:
Q  407 attcatttctacaatgagtttctttgagtatctccctcatgaatactcttatgtttgctatcttgct 473  Q
    ||||||||||| ||||||||| | |||||||||||| ||||| ||||||||  |||||| |||||||    
T  39275 attcatttctataatgagtttttatgagtatctcccacatgagtactcttaattttgctttcttgct 39341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 11027 - 11076
Alignment:
Q  185 ttcattgtatttcgaactcaaattg-tgaattttcccattttgagtttga 233  Q
    ||||| ||||||| ||||||||||| |||||||||||| |||||||||||    
T  11027 ttcatagtatttcaaactcaaattggtgaattttcccactttgagtttga 11076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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