View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5811_low_15 (Length: 436)
Name: NF5811_low_15
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 13447291 - 13446876
Alignment:
| Q |
1 |
caaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13447291 |
caaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgcgaaaattgtgccgacgatattgagaattac |
13447192 |
T |
|
| Q |
101 |
tgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13447191 |
tgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtga |
13447092 |
T |
|
| Q |
201 |
ttcgcattcctgatagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13447091 |
ttcgcattcctgatagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttcgacattttggactcgacaagcc |
13446992 |
T |
|
| Q |
301 |
tggtatgaatataggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcg |
400 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13446991 |
tggtatgaatataggagttgttggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgaccgtaattagtacgtcg |
13446892 |
T |
|
| Q |
401 |
cctaaaaaggaaaagg |
416 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13446891 |
cctaaaaaggaaaagg |
13446876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 13419740 - 13419325
Alignment:
| Q |
1 |
caaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattac |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||||| |||||| ||||||||||| |
|
|
| T |
13419740 |
caaagtagaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttgagaattac |
13419641 |
T |
|
| Q |
101 |
tgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtga |
200 |
Q |
| |
|
||| | | || ||| |||| || |||| |||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13419640 |
tgcccaacatttacagtcacatgtggtgcaaagtatcgtgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactttgtga |
13419541 |
T |
|
| Q |
201 |
ttcgcattcctgatagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
13419540 |
ttcgcattcctgatagcttacctcttgatgctgccggtcctcttctttgcgctggaatcacagtgtatagtcctcttcgacattttgaactcgacaagcc |
13419441 |
T |
|
| Q |
301 |
tggtatgaatataggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcg |
400 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| ||| |
|
|
| T |
13419440 |
tggtatgaatataggtgttgttggtcttggtggacttggccatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcg |
13419341 |
T |
|
| Q |
401 |
cctaaaaaggaaaagg |
416 |
Q |
| |
|
||| | || ||||||| |
|
|
| T |
13419340 |
cctcacaaagaaaagg |
13419325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 13426631 - 13426228
Alignment:
| Q |
1 |
caaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattac |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| || ||| ||||||||||| |
|
|
| T |
13426631 |
caaagtagaaaagtttaaagttggagacaaagtaggagtgggatacatggttgattcatgtcgttcatgcgaaaattgtgcggaagatcttgagaattac |
13426532 |
T |
|
| Q |
101 |
tgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtga |
200 |
Q |
| |
|
||| || || | || |||| || ||||| ||||||||||| |||| |||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
13426531 |
tgcccccaacaaacagttacatgtggtgctaagtatcgtgatggcagcgtcacatatggaggttattccgactcaatggttgcagatgagcactttgtga |
13426432 |
T |
|
| Q |
201 |
ttcgcattcctgatagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||| |
|
|
| T |
13426431 |
ttcgcattcctgatagcttacctcttgatgttgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttcgtcattttcaactcgacaagcc |
13426332 |
T |
|
| Q |
301 |
tggtatgaatataggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcg |
400 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || || ||||||||||| ||| |
|
|
| T |
13426331 |
tggtatgaatataggcgttgttggtcttggtggacttggtcatatggctgtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcg |
13426232 |
T |
|
| Q |
401 |
ccta |
404 |
Q |
| |
|
|||| |
|
|
| T |
13426231 |
ccta |
13426228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 11 - 416
Target Start/End: Complemental strand, 13413385 - 13412980
Alignment:
| Q |
11 |
aagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||| || ||||||||||||| || || || ||||| ||| || |||||||||||||| |||||| |
|
|
| T |
13413385 |
aagtttaaagttggagacaaagtaggtgttggctacttgattgattcatgtcgatcatgccaagattgtaatgacaatcttgagaattactgccccaaat |
13413286 |
T |
|
| Q |
111 |
atactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc |
210 |
Q |
| |
|
| |||| || |||| ||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13413285 |
ttgtagtcacatgtggtgccaagtatcgtgatggaaccgtcacttatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcc |
13413186 |
T |
|
| Q |
211 |
tgatagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaat |
310 |
Q |
| |
|
||| | | |||||||||| ||| |||||||| ||||| ||||| ||||| || |||||||||||| || |||||||||||| ||||||||| | || |
|
|
| T |
13413185 |
tgacaacatacctcttgaatttgctggtcctctcctttgtgctggtgtcaccgtatatagtcctcttcgattttttggactcgataagcctggtttacat |
13413086 |
T |
|
| Q |
311 |
ataggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaagg |
410 |
Q |
| |
|
||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| || || ||||||||||| |||||||| || | |
|
|
| T |
13413085 |
ataggtgttgttggtcttggtggacttggccatatggctgtgaaatttgccaaagctttcggtgctaatgttaccgtaattagtacatcgcctaacaaag |
13412986 |
T |
|
| Q |
411 |
aaaagg |
416 |
Q |
| |
|
|||||| |
|
|
| T |
13412985 |
aaaagg |
13412980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 156 - 416
Target Start/End: Complemental strand, 13454089 - 13453829
Alignment:
| Q |
156 |
atggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatggtgccggtcctcttctttgcgctgg |
255 |
Q |
| |
|
||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||| ||| ||||||||||||| || | |||||| ||||| ||||| |
|
|
| T |
13454089 |
atggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattccagatcagttacctcttgatgcagctgctcctctcctttgtgctgg |
13453990 |
T |
|
| Q |
256 |
agtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttggtcatatggctgtgaaa |
355 |
Q |
| |
|
| || || |||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
13453989 |
gataaccgtatatagtcctcttcgacattttggactcgacaagcctgatatgaatataggtgttgttggtcttggtggacttggccatatggccgtgaaa |
13453890 |
T |
|
| Q |
356 |
tttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaagg |
416 |
Q |
| |
|
|| || |||||||| |||||||| ||||| ||||||||||| || |||||||||||||||| |
|
|
| T |
13453889 |
ttcgccaaagctttcggtgctaatgtgaccgtaattagtacatcacctaaaaaggaaaagg |
13453829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 149 - 396
Target Start/End: Original strand, 13393562 - 13393809
Alignment:
| Q |
149 |
atcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatggtgccggtcctcttcttt |
248 |
Q |
| |
|
||||| |||||||| | ||| ||||||||||||||||| ||||||||| | ||| |||||||||| ||||||| ||||| ||| | |||||| |||| |
|
|
| T |
13393562 |
atcacatatggagggtactctgactcaatggttgcagatgagcactttatagttcacattcctgatggcttaccacttgaatctgctgctcctctccttt |
13393661 |
T |
|
| Q |
249 |
gcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttggtcatatggc |
348 |
Q |
| |
|
| || || | || ||||||||||||||| || |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| |
|
|
| T |
13393662 |
gtgccggtattactgtgtatagtcctcttcgatattttggactcgacaagcctggtatgaatataggtattgttggtcttggtggacttggtcacttggg |
13393761 |
T |
|
| Q |
349 |
tgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtac |
396 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||| || || ||||||||||| |
|
|
| T |
13393762 |
tgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtac |
13393809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 13389007 - 13389381
Alignment:
| Q |
1 |
caaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattac |
100 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||||| || || |||||||||||||||||||| || ||| ||||||||| ||| || |||| |||||| |
|
|
| T |
13389007 |
caaagtagaaaagttcaatgttggagacaaagtaggtgttggctacatggttgattcatgtcgatcatgtcaaaattgtgttgacaatcttgaaaattac |
13389106 |
T |
|
| Q |
101 |
tgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtga |
200 |
Q |
| |
|
|| ||| || |||| |||| || |||| ||| ||||| || | ||| |||||||||| || |||||| |||||||||| ||| |||| ||| |
|
|
| T |
13389107 |
tgtcccacatttactttcacatgtggtgccaagtatcgcgatggaacgagcacatatggaggttattctgactcattggttgcagatgagaacttcgtgg |
13389206 |
T |
|
| Q |
201 |
ttcgcattcctgatagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcc |
300 |
Q |
| |
|
||| |||||||||| | ||||| ||||| | ||| | ||||| ||||| ||||| |||| ||||| |||||||||||| ||| ||||||||| || || |
|
|
| T |
13389207 |
ttcacattcctgatggattaccacttgaagctgctgcacctctcctttgtgctgggatcactgtgtacagtcctcttagatattatggactcgataaacc |
13389306 |
T |
|
| Q |
301 |
tggtatgaatataggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgc |
375 |
Q |
| |
|
|||| | |||||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
13389307 |
tggtcttcgtataggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggtgc |
13389381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 13385186 - 13385581
Alignment:
| Q |
1 |
caaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattac |
100 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||||| || || ||||| ||||||||||||| || ||| ||||||||| ||| || |||| |||||| |
|
|
| T |
13385186 |
caaagtagaaaagttcaatgttggagacaaagtaggtgttggctacataattgattcatgtcgatcgtgtcaaaattgtgttgacaatcttgaaaattac |
13385285 |
T |
|
| Q |
101 |
tgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtga |
200 |
Q |
| |
|
||| || ||| ||| ||| | ||| | | ||||||||| || ||||| | ||||||| || |||||| |||||| | ||| |||| ||| |
|
|
| T |
13385286 |
tgccccgcatacactactacagttggtggcatgcatcgtgatggaaccatcacacacggaggttattctgactcattggttgtggctgagaacttcgtgg |
13385385 |
T |
|
| Q |
201 |
ttcgcattcctgatagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcc |
300 |
Q |
| |
|
||| |||||||||| | ||||| ||||| | ||| | ||||| ||||| ||||| |||| ||||| |||||||||||| | |||||||||||||| || |
|
|
| T |
13385386 |
ttcacattcctgatggattaccacttgaagctgctgcacctctcctttgtgctgggatcactgtgtacagtcctcttagatactttggactcgacaaacc |
13385485 |
T |
|
| Q |
301 |
tggtatgaatataggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtac |
396 |
Q |
| |
|
|||| | || | || ||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
13385486 |
tggtcttcatgtcggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcttttggtgctaatgtgaccgtaattagtac |
13385581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 139 - 387
Target Start/End: Complemental strand, 13379140 - 13378892
Alignment:
| Q |
139 |
tgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatggtgccggt |
238 |
Q |
| |
|
||||||||||||||| |||||||| | ||| ||| | ||||||| ||||| |||||| | | || ||||| ||| |||| | ||||||| ||||| | |
|
|
| T |
13379140 |
tgatggcactatcacatatggaggctactctgacaccatggttgtcgacgaacactttattgtccgtattcccgatgccttatcacttgatgctgccgct |
13379041 |
T |
|
| Q |
239 |
cctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttg |
338 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||| || | | |||||||||| | ||||| ||||| || ||||||| || || |||||||||||| | | |
|
|
| T |
13379040 |
cctctcctttgtgctgggatcacagtgtatagcccaatgaaacattttggatttgacaaacctggactgcatataggtgtggttggtcttggtggattag |
13378941 |
T |
|
| Q |
339 |
gtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgt |
387 |
Q |
| |
|
|||||||||||||||| || || ||||| ||||||| ||| || ||||| |
|
|
| T |
13378940 |
gtcatatggctgtgaagttcgccaaagcctttggtgttaaggtaactgt |
13378892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 139 - 378
Target Start/End: Complemental strand, 13373344 - 13373105
Alignment:
| Q |
139 |
tgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatggtgccggt |
238 |
Q |
| |
|
|||||| || ||||| |||||||| | ||| || | |||||||| |||| ||||| ||||| || ||||||||| |||||| ||||||| || | | |
|
|
| T |
13373344 |
tgatggaacaatcacatatggaggctactctgataccatggttgcccacgaacacttcgtgatccgtattcctgatgccttaccacttgatgccgctgct |
13373245 |
T |
|
| Q |
239 |
cctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttg |
338 |
Q |
| |
|
||||||||||| || || ||||||| ||||| ||| | | | |||||||||| ||||||||||| | || | || || || |||||||||||| | | |
|
|
| T |
13373244 |
cctcttctttgtgcggggatcacagtatatagccctttgaaatattttggacttaacaagcctggtttacatgtgggtgtggttggtcttggtggattag |
13373145 |
T |
|
| Q |
339 |
gtcatatggctgtgaaatttgctaaagcttttggtgctaa |
378 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
13373144 |
gtcatatggctgtgaaatttaccaaagcttttggtgctaa |
13373105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 13454244 - 13454143
Alignment:
| Q |
1 |
caaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattac |
100 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||||| ||||||| | |||||||||| |||| || ||| ||||||||| || || ||||||||||| |
|
|
| T |
13454244 |
caaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgataatcttgagaattac |
13454145 |
T |
|
| Q |
101 |
tg |
102 |
Q |
| |
|
|| |
|
|
| T |
13454144 |
tg |
13454143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 136 - 414
Target Start/End: Complemental strand, 47601427 - 47601149
Alignment:
| Q |
136 |
tcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatggtgcc |
235 |
Q |
| |
|
|||||||||||| | ||| || ||||||| ||| ||||||||||||| |||||||||||||||| ||| |||||| ||| | || || ||||| | | | |
|
|
| T |
47601427 |
tcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcccgatggtttgccacttgaagctact |
47601328 |
T |
|
| Q |
236 |
ggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggac |
335 |
Q |
| |
|
| |||||||||||| || || |||||||||||||||||||| || ||||||||||||| || ||||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
47601327 |
gctcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggactcgataaacctggtatgcatataggtgttgttggtcttggtggac |
47601228 |
T |
|
| Q |
336 |
ttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaa |
414 |
Q |
| |
|
||||||| |||||||| || ||||||||||||||||| ||||| ||||||||||||||||| || ||||| || ||||| |
|
|
| T |
47601227 |
ttggtcacatggctgttaagtttgctaaagcttttggggctaatgtgactgtaattagtacatcacctaacaaagaaaa |
47601149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 139 - 378
Target Start/End: Original strand, 28430528 - 28430767
Alignment:
| Q |
139 |
tgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatggtgccggt |
238 |
Q |
| |
|
||||||||| ||||| |||||||| | ||||||| ||||||| | ||||| ||||||||| ||||||| ||||| |||||||||||| ||| | | |
|
|
| T |
28430528 |
tgatggcaccatcacatatggaggctactccgacacaatggtcaccgacgaaagctttgtgatcagcattccaaatagcctacctcttgatgctgcagct |
28430627 |
T |
|
| Q |
239 |
cctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttg |
338 |
Q |
| |
|
||||| || ||||| || |||| |||||||| ||| | | | |||||||||| || || ||| || | |||| || || |||||||||||||||| |
|
|
| T |
28430628 |
cctctcctctgcgccgggatcacggtgtatagccctttgaaatattttggacttgataaacctaacttgcaattaggtgtggttggtcttggtggacttg |
28430727 |
T |
|
| Q |
339 |
gtcatatggctgtgaaatttgctaaagcttttggtgctaa |
378 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28430728 |
gtcatatggctgtgaaatttgccaaagcttttggtgctaa |
28430767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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