View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_19 (Length: 422)
Name: NF5811_low_19
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 1139580 - 1139387
Alignment:
| Q |
25 |
ttctgctttaaacaaat----agagaaatgtatggttcatagataagaaaaatcaacggtaaagaaatggatcacacatgactgactattaaaaaagccg |
120 |
Q |
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| T |
1139580 |
ttctgctttaaacaaattaatagcgaaatgtatggttcatagataagaaaaatcaacaataaagaaattgatcacacat----------taaaaaagccg |
1139491 |
T |
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| Q |
121 |
tcatggatggaatggtaacagtttgatactattattaattttgatcgtggagtctcaaaccaatgataaaattatttaaacatgatttagaaaatgtgac |
220 |
Q |
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| T |
1139490 |
tcatggatggaatggtaacagtttgatactattattaattttgatcgtggagtctcaaaccaatgataaaattatttaaacatgatttagaaaatgtgac |
1139391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 316 - 410
Target Start/End: Complemental strand, 1139342 - 1139249
Alignment:
| Q |
316 |
tttgagaagtatttatatatatgatcctaaccatgaatcgaaaatgacaagttttcacttaaagttatcaaattcaaattgaacactccaagtat |
410 |
Q |
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| T |
1139342 |
tttgagaagtatttg-atatatgatcctaaccatgaatcgaaaatgacaagttttcacttaaagttatcaaattcaaattgaacactccaagtat |
1139249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 1139390 - 1139344
Alignment:
| Q |
245 |
atgtaactgtgtgtgttttagtatatagtgcatatgaatatgtgataga |
293 |
Q |
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| T |
1139390 |
atgtaactgtgtgtgttttagtata--gtgcatatgaatatgtgataga |
1139344 |
T |
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